Prupe.1G514600_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011007
Physical Location & Seq
Forward (+)
42345600 .. 42347900
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G514600.1

Sequence Viewer

Length: 1239 bp
ATGGATTCTGGTAATAGTGGAAGTATGTCTTCAAGTGGTGAAGATCAAGACCATGAAACCTCACGACCCGAATCCCTCCCGGGTTACTTGAATTCTCCAACCCAATTCGGTTCTTCCGACCCAATATTACACCCTTCTCTCCTTTCTCATTACCAAAACCACAACCACCAACCCACCACTACCGCTACACTTTTTGATCATCATAATTACAATTATGATCACCACAATCTCCACACAACATTGTCTCATCAAATACCCCAATCCAACACTTCAAACCCCAATTTCATGCCCGACCCAAGATCCACCCGACCCAACTCCACCAACCCAATTCCCAACCCACCACCCTCATCCCACCACCAAGGACCTAGCCGAGCTTCATCCTCATCAGCGGCAGCGCAGACCCGAAACTCCAAGAAGAGGACCAGAGCATCTAGAAGAGCACCAACCACTGTGCTGACCACCGACACATCCAACTTCCGAGCAATGGTGCAGGAGTTCACTGGCATCCCAGCTCCCCCATTTGCAGCCTCCTCCTCCTCATCCTCGTCGTTTTCGCGACGGTTCGATATGTTTGGCTCTGGAATGAGATCTGCTCATCATTTGGACACGTTGGGGCCTCTCTACCCTCTGCGTCCCTCAGCTCAAAAGGTCCAGCAACCAACCCCATTTCTCTCTTCTAATAATTCTCCTTCTAATTCTGCATTGTTGATGATGAGCAATAGCGGCGGTTTGGTGGATGCCACTAATATTGCTACCACTAGTAACAATAGCAACAACAATTTCAACCCAACAACTTACCAATTGCTAAACCAAGGCCTCTTCCCCAGCATGCAAAACCCAATTCTCACATTTCAACATGAGCAGCAGCCACATCCTTTCCACTCTTCTTCAATGAATTTGGCCAGCTTTGGGGCAAGGCCTGCTCGGGGAGTGATTGGTAATTTAGCCATGCATTCATCTCTTGAGGACCCATTGGGGGGCATGAGCCATGGATCATACACAAGCCAGCTTGGTGGTGGTGTTGGGGGATCATCACTGGACAGCAGCCACGTGGCAGCTTCAGGTGGGCACAATGGCTGGAGGGATCATGGAGTTGGATCAAACGATGGGAGATTGTCAGCAGCACTGGATCAGCATTTGAGGCCTAATTTGGACAAGTGCTTGGAGATGAACAATGTTAATTCTAATACCAGAGGTGAAGGTACAGTTGAGTCTTGGATTTGTCCTAATTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

413

Amino Acids

44.23

Weight (kDa)

6.78

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 556
AciI CCGC 4 cut(s) 183, 389, 723, 726
AclWI GGATC 6 cut(s) 294, 1000, 1036, 1092, 1105, 1137
AcoI YGGCCR 1 cut(s) 900
AcsI RAATTY 2 cut(s) 91, 895
AcuI CTGAAG 1 cut(s) 1044
AcvI CACGTG 1 cut(s) 1051
AfaI GTAC 1 cut(s) 1204
AfiI CCNNNNNNNGG 6 cut(s) 417, 484, 909, 926, 976, 977
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 6 cut(s) 33, 91, 273, 784, 854, 891
AhlI ACTAGT 1 cut(s) 758
AluBI AGCT 6 cut(s) 374, 512, 641, 906, 1009, 1058
AluI AGCT 6 cut(s) 374, 512, 641, 906, 1009, 1058
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 6 cut(s) 294, 1000, 1036, 1092, 1105, 1137
Ama87I CYCGRG 2 cut(s) 79, 924
AoxI GGCC 5 cut(s) 614, 814, 900, 917, 1142
ApeKI GCWGC 7 cut(s) 392, 524, 862, 865, 1044, 1055, 1121
ApoI RAATTY 2 cut(s) 91, 895
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 5 cut(s) 362, 420, 614, 649, 967
AsuC2I CCSGG 2 cut(s) 80, 81
AsuHPI GGTGA 3 cut(s) 50, 212, 1208
AvaI CYCGRG 2 cut(s) 79, 924
AvaII GGWCC 4 cut(s) 362, 420, 649, 967
BaeGI GKGCMC 1 cut(s) 1071
BalI TGGCCA 1 cut(s) 902
BbrPI CACGTG 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 637
BbvI GCAGC 7 cut(s) 404, 536, 874, 877, 1056, 1067, 1133
BccI CCATC 1 cut(s) 1100
BclI TGATCA 2 cut(s) 196, 217
BcnI CCSGG 2 cut(s) 80, 81
BcoDI GTCTC 1 cut(s) 249
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 3 cut(s) 366, 432, 759
BglII AGATCT 1 cut(s) 587
BisI GCNGC 9 cut(s) 390, 393, 525, 724, 863, 866, 1045, 1056, 1122
BlsI GCNGC 9 cut(s) 391, 394, 526, 725, 864, 867, 1046, 1057, 1123
Bme1390I CCNGG 2 cut(s) 80, 81
Bme18I GGWCC 4 cut(s) 362, 420, 649, 967
BmeT110I CYCGRG 2 cut(s) 79, 924
BmgT120I GGNCC 5 cut(s) 362, 420, 614, 649, 967
BmiI GGNNCC 2 cut(s) 615, 969
BmrFI CCNGG 2 cut(s) 80, 81
BmsI GCATC 3 cut(s) 437, 513, 727
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 1 cut(s) 1099
Bpu10I CCTNAGC 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 2 cut(s) 80, 81
BsaAI YACGTR 1 cut(s) 1051
BsaJI CCNNGG 4 cut(s) 79, 358, 811, 988
Bsc4I CCNNNNNNNGG 6 cut(s) 417, 484, 909, 926, 976, 977
Bse1I ACTGG 3 cut(s) 505, 1041, 1131
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 79, 358, 811, 988
BseGI GGATG 7 cut(s) 347, 377, 467, 504, 539, 742, 871
BseLI CCNNNNNNNGG 6 cut(s) 417, 484, 909, 926, 976, 977
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 651, 1224
BseNI ACTGG 3 cut(s) 505, 1041, 1131
BseRI GAGGAG 3 cut(s) 520, 523, 526
BseSI GKGCMC 1 cut(s) 1071
BseXI GCAGC 7 cut(s) 404, 536, 874, 877, 1056, 1067, 1133
BseYI CCCAGC 2 cut(s) 508, 824
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 5 cut(s) 616, 816, 902, 919, 1144
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 2 cut(s) 79, 924
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 6 cut(s) 417, 484, 909, 926, 976, 977
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 5 cut(s) 616, 816, 902, 919, 1144
BsoBI CYCGRG 2 cut(s) 79, 924
Bsp1286I GDGCHC 2 cut(s) 442, 1071
Bsp19I CCATGG 1 cut(s) 988
Bsp68I TCGCGA 1 cut(s) 556
BspACI CCGC 4 cut(s) 183, 389, 723, 726
BspANI GGCC 5 cut(s) 616, 816, 902, 919, 1144
BspCNI CTCAG 2 cut(s) 650, 1225
BspFNI CGCG 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 615, 969
BspPI GGATC 6 cut(s) 294, 1000, 1036, 1092, 1105, 1137
BspQI GCTCTTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 3 cut(s) 505, 1041, 1131
BssECI CCNNGG 4 cut(s) 79, 358, 811, 988
BssT1I CCWWGG 3 cut(s) 358, 811, 988
Bst4CI ACNGT 3 cut(s) 451, 561, 1207
Bst6I CTCTTC 5 cut(s) 410, 430, 679, 824, 889
BstAPI GCANNNNNTGC 1 cut(s) 920
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 4 cut(s) 830, 904, 921, 1007
BstDEI CTNAG 2 cut(s) 637, 1233
BstDSI CCRYGG 1 cut(s) 988
BstF5I GGATG 7 cut(s) 347, 377, 467, 504, 539, 742, 871
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 723, 920, 1141
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 78, 79
BstSLI GKGCMC 1 cut(s) 1071
BstUI CGCG 1 cut(s) 556
BstV1I GCAGC 7 cut(s) 404, 536, 874, 877, 1056, 1067, 1133
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 299, 587
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 2 cut(s) 299, 587
BsuRI GGCC 5 cut(s) 616, 816, 902, 919, 1144
BtgI CCRYGG 1 cut(s) 988
BtsCI GGATG 7 cut(s) 347, 377, 467, 504, 539, 742, 871
BtsIMutI CAGTG 4 cut(s) 447, 498, 1034, 1124
BtuMI TCGCGA 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 830, 904, 921, 1007
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 5 cut(s) 362, 420, 614, 649, 967
Cfr9I CCCGGG 1 cut(s) 79
CseI GACGC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 1203
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 8 cut(s) 53, 286, 829, 857, 949, 982, 989, 1088
CviQI GTAC 1 cut(s) 1203
DdeI CTNAG 2 cut(s) 637, 1233
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 5 cut(s) 410, 430, 679, 824, 889
EarI CTCTTC 5 cut(s) 410, 430, 679, 824, 889
Eco130I CCWWGG 3 cut(s) 358, 811, 988
Eco147I AGGCCT 3 cut(s) 816, 919, 1144
Eco47I GGWCC 4 cut(s) 362, 420, 649, 967
Eco57I CTGAAG 1 cut(s) 1044
Eco72I CACGTG 1 cut(s) 1051
Eco88I CYCGRG 2 cut(s) 79, 924
EcoO109I RGGNCCY 3 cut(s) 362, 614, 967
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 358, 811, 988
EcoT22I ATGCAT 1 cut(s) 954
ErhI CCWWGG 3 cut(s) 358, 811, 988
FaeI CATG 8 cut(s) 56, 289, 832, 860, 952, 985, 992, 1091
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 618
FatI CATG 8 cut(s) 52, 285, 828, 856, 948, 981, 988, 1087
FbaI TGATCA 2 cut(s) 196, 217
Fnu4HI GCNGC 9 cut(s) 390, 393, 525, 724, 863, 866, 1045, 1056, 1122
FokI GGATG 7 cut(s) 334, 364, 454, 491, 526, 749, 858
Fsp4HI GCNGC 9 cut(s) 390, 393, 525, 724, 863, 866, 1045, 1056, 1122
FspBI CTAG 3 cut(s) 366, 432, 759
GlaI GCGC 1 cut(s) 396
GluI GCNGC 9 cut(s) 390, 393, 525, 724, 863, 866, 1045, 1056, 1122
GsaI CCCAGC 2 cut(s) 512, 828
GsuI CTGGAG 1 cut(s) 1099
HaeIII GGCC 5 cut(s) 616, 816, 902, 919, 1144
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 620
HhaI GCGC 1 cut(s) 397
Hin1II CATG 8 cut(s) 56, 289, 832, 860, 952, 985, 992, 1091
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 3 cut(s) 5, 71, 1211
HpaII CCGG 1 cut(s) 80
HphI GGTGA 3 cut(s) 50, 212, 1208
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 118, 479, 1234
Hpy188III TCNNGA 6 cut(s) 47, 63, 432, 555, 579, 962
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 2 cut(s) 550, 561
HpyAV CCTTC 3 cut(s) 144, 699, 1193
HpyCH4III ACNGT 3 cut(s) 451, 561, 1207
HpyCH4IV ACGT 2 cut(s) 608, 1050
HpyCH4V TGCA 5 cut(s) 490, 524, 701, 832, 952
HpyF10VI GCNNNNNNNGC 3 cut(s) 723, 920, 1141
HpyF3I CTNAG 2 cut(s) 637, 1233
HpySE526I ACGT 2 cut(s) 608, 1050
Hsp92II CATG 8 cut(s) 56, 289, 832, 860, 952, 985, 992, 1091
HspAI GCGC 1 cut(s) 395
Ksp22I TGATCA 2 cut(s) 196, 217
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 7 cut(s) 404, 536, 874, 877, 1056, 1067, 1133
LweI GCATC 3 cut(s) 437, 513, 727
MaeI CTAG 3 cut(s) 366, 432, 759
MaeII ACGT 2 cut(s) 608, 1050
MaeIII GTNAC 2 cut(s) 83, 761
MboII GAAGA 9 cut(s) 21, 53, 105, 427, 447, 666, 811, 876, 879
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 2 cut(s) 299, 587
MhlI GDGCHC 2 cut(s) 442, 1071
MlsI TGGCCA 1 cut(s) 902
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 1 cut(s) 1220
MmeI TCCRAC 5 cut(s) 122, 141, 288, 495, 1075
Mox20I TGGCCA 1 cut(s) 902
Mph1103I ATGCAT 1 cut(s) 954
MscI TGGCCA 1 cut(s) 902
MseI TTAA 1 cut(s) 1179
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 80, 81
MunI CAATTG 1 cut(s) 800
Mva1269I GAATGC 1 cut(s) 952
MvnI CGCG 1 cut(s) 556
MwoI GCNNNNNNNGC 3 cut(s) 723, 920, 1141
NciI CCSGG 2 cut(s) 80, 81
NcoI CCATGG 1 cut(s) 988
NlaIII CATG 8 cut(s) 56, 289, 832, 860, 952, 985, 992, 1091
NlaIV GGNNCC 2 cut(s) 615, 969
NmeAIII GCCGAG 1 cut(s) 395
NruI TCGCGA 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 954
NspI RCATGY 1 cut(s) 832
PaeI GCATGC 1 cut(s) 832
PceI AGGCCT 3 cut(s) 816, 919, 1144
PciSI GCTCTTC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 2 cut(s) 5, 71
PkrI GCNGC 9 cut(s) 391, 394, 526, 725, 864, 867, 1046, 1057, 1123
PleI GAGTC 1 cut(s) 1219
PmaCI CACGTG 1 cut(s) 1051
PmlI CACGTG 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1219
Ppu21I YACGTR 1 cut(s) 1051
PpuMI RGGWCCY 2 cut(s) 362, 967
Psp5II RGGWCCY 2 cut(s) 362, 967
PspCI CACGTG 1 cut(s) 1051
PspFI CCCAGC 2 cut(s) 508, 824
PspN4I GGNNCC 2 cut(s) 615, 969
PspPI GGNCC 5 cut(s) 362, 420, 614, 649, 967
PspPPI RGGWCCY 2 cut(s) 362, 967
PsuI RGATCY 2 cut(s) 299, 587
RruI TCGCGA 1 cut(s) 556
RsaI GTAC 1 cut(s) 1204
RsaNI GTAC 1 cut(s) 1203
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 1179
SatI GCNGC 9 cut(s) 390, 393, 525, 724, 863, 866, 1045, 1056, 1122
Sau96I GGNCC 5 cut(s) 362, 420, 614, 649, 967
SchI GAGTC 1 cut(s) 1220
ScrFI CCNGG 2 cut(s) 80, 81
SduI GDGCHC 2 cut(s) 442, 1071
SfaNI GCATC 3 cut(s) 437, 513, 727
SinI GGWCC 4 cut(s) 362, 420, 649, 967
SmaI CCCGGG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SpeI ACTAGT 1 cut(s) 758
SphI GCATGC 1 cut(s) 832
SseBI AGGCCT 3 cut(s) 816, 919, 1144
SsiI CCGC 4 cut(s) 183, 389, 723, 726
SspI AATATT 2 cut(s) 126, 748
SspMI CTAG 3 cut(s) 366, 432, 759
StuI AGGCCT 3 cut(s) 816, 919, 1144
StyD4I CCNGG 2 cut(s) 78, 79
StyI CCWWGG 3 cut(s) 358, 811, 988
TaaI ACNGT 3 cut(s) 451, 561, 1207
TaiI ACGT 2 cut(s) 611, 1053
TaqI TCGA 1 cut(s) 564
TauI GCSGC 2 cut(s) 392, 726
TfiI GAWTC 2 cut(s) 5, 71
Tru1I TTAA 1 cut(s) 1179
Tru9I TTAA 1 cut(s) 1179
TscAI CASTG 4 cut(s) 454, 505, 1041, 1131
TseI GCWGC 7 cut(s) 392, 524, 862, 865, 1044, 1055, 1121
TspDTI ATGAA 6 cut(s) 69, 274, 366, 908, 945, 1184
TspMI CCCGGG 1 cut(s) 79
TspRI CASTG 4 cut(s) 454, 505, 1041, 1131
VpaK11BI GGWCC 4 cut(s) 362, 420, 649, 967
XapI RAATTY 2 cut(s) 91, 895
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmaI CCCGGG 1 cut(s) 79
XspI CTAG 3 cut(s) 366, 432, 759
Zsp2I ATGCAT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.