FvH4_5g37690

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011007
Physical Location & Seq
Reverse (-)
27739948 .. 27742023
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37690.t1

Sequence Viewer

Length: 1116 bp
ATGGATTCTGGTAACAGTGGAAGCATGTCTTCAAGTGGTGGTGATGATCAAGACCTTGATATTGTTTCACGGCCTGAATCCGTTTCCGGGTTTCTGAATTCTTCATCTCATGCCACTATGCAATTTGGTGGCTCCTCCGACAACCACCCAAATCTGTTTTCCCAATACCAAAACCACCACCACCACCAACAACAACCCAATTCTTCTTTTGCTCTTTCATCCAATTATCTCCAGGCATTGTCTCAATCTCAGCCACCAAACTCTTCAAATCACAGTTTCCTGCTCAATCAAAGTTCCGATCATCAACCAAACTCCACCACCAATACTAGATCCGATCATCTACAAGCCAACTGCACCAACTCGATTGCAAACCTACCAGGTTCATCATCTTCAGCTCATCAAGCTCCATCGATATCGGGTACACCAAGGGGTAGCTATTCTGCCAAGCCCAATAGTTTGGTCAGAAACTCGAAGAAGAGGACGAGAGCTTCTAGAAGGGCTCCCACGACTGTTCTGACCACCGACACCTCGAATTTCCGAGCAATGGTGCAGGAATTCACTGGGATCCCAGCACCGCCGTTCTCTGCAGGCTCATCATCCTACTCTCGAAGGCTCGACAGTATCTTCGGGTCTGGATCTGTCTACCCTTTACGTCCTTCAGCTCAAAAGCTACCGCATCATCATAATATGATGGTAAACATGCAAAACCCAATTCTGAGTGCATTCCAGTCATCCCTTTCCCATCATCATGAACATCAGCAGCAACAGCAGCAGCAGCCATCTCCGATCCACTCTTCCTCAGTTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCTTTACATTGTCTTGAAGATCAATTGGGTATGAGCATGAGCCATGGATATCTAAACACAAACCTTGGTGCTTCTGATGGGTCAACAATGCTGCCATTGAGGAGTGATGATGATCATAGTGTTAGATGGAGAGATCATGGACTTGGATTGGGCGCCGTCAGCGATCAAAATCACCATTTGAGGCCTAATTTGGATCAGGGGATAGTTAATTCATCGAGATCAAACACTAGAGGTGAGGCTACGGTTGATTCATGGGTTTGCCCTTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

372

Amino Acids

40.2

Weight (kDa)

6.93

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 166 - 193 2.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 995
AccI GTMKAC 1 cut(s) 642
AciI CCGC 2 cut(s) 575, 674
AclWI GGATC 6 cut(s) 324, 559, 572, 643, 781, 1044
AcsI RAATTY 3 cut(s) 97, 532, 554
AcuI CTGAAG 3 cut(s) 375, 642, 1092
AcyI GRCGYC 1 cut(s) 996
AfaI GTAC 2 cut(s) 421, 835
AfiI CCNNNNNNNGG 2 cut(s) 87, 544
AgsI TTSAA 3 cut(s) 33, 267, 860
AjnI CCWGG 2 cut(s) 231, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 6 cut(s) 395, 404, 435, 488, 662, 670
AluI AGCT 6 cut(s) 395, 404, 435, 488, 662, 670
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 6 cut(s) 324, 559, 572, 643, 781, 1044
AoxI GGCC 2 cut(s) 71, 1025
ApeKI GCWGC 5 cut(s) 760, 769, 772, 775, 934
ApoI RAATTY 3 cut(s) 97, 532, 554
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AspLEI GCGC 1 cut(s) 998
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 53, 1007, 1088
BamHI GGATCC 1 cut(s) 564
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 5 cut(s) 772, 781, 784, 787, 921
BccI CCATC 6 cut(s) 415, 685, 750, 787, 914, 963
BceAI ACGGC 3 cut(s) 86, 562, 983
BciT130I CCWGG 2 cut(s) 233, 378
BclI TGATCA 2 cut(s) 46, 955
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 4 cut(s) 327, 492, 1071, 1114
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 999
BisI GCNGC 5 cut(s) 761, 770, 773, 776, 935
BlsI GCNGC 5 cut(s) 762, 771, 774, 777, 936
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 3 cut(s) 88, 233, 378
BmiI GGNNCC 4 cut(s) 133, 501, 566, 997
BmrFI CCNGG 3 cut(s) 88, 233, 378
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 410
BsaBI GATNNNNATC 2 cut(s) 954, 1011
BsaHI GRCGYC 1 cut(s) 996
BsaJI CCNNGG 3 cut(s) 425, 886, 907
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 544
Bse1I ACTGG 2 cut(s) 565, 727
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 2 cut(s) 954, 1011
BseBI CCWGG 2 cut(s) 233, 378
BseCI ATCGAT 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 425, 886, 907
BseGI GGATG 3 cut(s) 218, 596, 731
BseJI GATNNNNATC 2 cut(s) 954, 1011
BseLI CCNNNNNNNGG 2 cut(s) 87, 544
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 3 cut(s) 263, 707, 813
BseNI ACTGG 2 cut(s) 565, 727
BseRI GAGGAG 2 cut(s) 124, 958
BseXI GCAGC 5 cut(s) 772, 781, 784, 787, 921
BseYI CCCAGC 1 cut(s) 568
BsgI GTGCAG 2 cut(s) 337, 569
BshFI GGCC 2 cut(s) 73, 1027
BshNI GGYRCC 1 cut(s) 995
BshVI ATCGAT 1 cut(s) 410
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 2 cut(s) 87, 544
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 73, 1027
Bsp1286I GDGCHC 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 886
BspACI CCGC 2 cut(s) 575, 674
BspANI GGCC 2 cut(s) 73, 1027
BspCNI CTCAG 3 cut(s) 262, 708, 812
BspDI ATCGAT 1 cut(s) 410
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 4 cut(s) 133, 501, 566, 997
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 6 cut(s) 324, 559, 572, 643, 781, 1044
BspT107I GGYRCC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 2 cut(s) 565, 727
BssECI CCNNGG 3 cut(s) 425, 886, 907
BssNI GRCGYC 1 cut(s) 996
BssT1I CCWWGG 3 cut(s) 425, 886, 907
Bst2UI CCWGG 2 cut(s) 233, 378
Bst4CI ACNGT 6 cut(s) 17, 275, 511, 620, 833, 1087
Bst6I CTCTTC 3 cut(s) 268, 470, 799
BstACI GRCGYC 1 cut(s) 996
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 3 cut(s) 249, 716, 799
BstDSI CCRYGG 1 cut(s) 886
BstF5I GGATG 3 cut(s) 218, 596, 731
BstH2I RGCGCY 1 cut(s) 999
BstHHI GCGC 1 cut(s) 998
BstMAI GTCTC 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 401, 766, 769, 775, 1002
BstNI CCWGG 2 cut(s) 233, 378
BstNSI RCATGY 2 cut(s) 28, 703
BstSCI CCNGG 3 cut(s) 86, 231, 376
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 5 cut(s) 772, 781, 784, 787, 921
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 329, 564, 635
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 3 cut(s) 329, 564, 635
Bsu15I ATCGAT 1 cut(s) 410
BsuRI GGCC 2 cut(s) 73, 1027
BsuTUI ATCGAT 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 886
BtsCI GGATG 3 cut(s) 218, 596, 731
BtsIMutI CAGTG 2 cut(s) 22, 558
Cac8I GCNNGC 1 cut(s) 589
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 998
ClaI ATCGAT 1 cut(s) 410
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 2 cut(s) 420, 834
CviAII CATG 8 cut(s) 25, 110, 700, 749, 880, 887, 980, 1095
CviQI GTAC 2 cut(s) 420, 834
DdeI CTNAG 3 cut(s) 249, 716, 799
DinI GGCGCC 1 cut(s) 997
Eam1104I CTCTTC 3 cut(s) 268, 470, 799
EarI CTCTTC 3 cut(s) 268, 470, 799
Eco130I CCWWGG 3 cut(s) 425, 886, 907
Eco147I AGGCCT 1 cut(s) 1027
Eco24I GRGCYC 1 cut(s) 502
Eco32I GATATC 2 cut(s) 414, 893
Eco57I CTGAAG 3 cut(s) 375, 642, 1092
EcoRI GAATTC 2 cut(s) 97, 554
EcoRII CCWGG 2 cut(s) 231, 376
EcoRV GATATC 2 cut(s) 414, 893
EcoT14I CCWWGG 3 cut(s) 425, 886, 907
EcoT38I GRGCYC 1 cut(s) 502
EgeI GGCGCC 1 cut(s) 997
EheI GGCGCC 1 cut(s) 997
ErhI CCWWGG 3 cut(s) 425, 886, 907
FaeI CATG 8 cut(s) 28, 113, 703, 752, 883, 890, 983, 1098
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 842
FatI CATG 8 cut(s) 24, 109, 699, 748, 879, 886, 979, 1094
FbaI TGATCA 2 cut(s) 46, 955
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 5 cut(s) 761, 770, 773, 776, 935
FokI GGATG 3 cut(s) 205, 583, 718
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 5 cut(s) 761, 770, 773, 776, 935
FspBI CTAG 4 cut(s) 327, 492, 1071, 1114
GlaI GCGC 1 cut(s) 997
GluI GCNGC 5 cut(s) 761, 770, 773, 776, 935
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 999
HaeIII GGCC 2 cut(s) 73, 1027
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 998
Hin1I GRCGYC 1 cut(s) 996
Hin1II CATG 8 cut(s) 28, 113, 703, 752, 883, 890, 983, 1098
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HincII GTYRAC 2 cut(s) 805, 927
HindII GTYRAC 2 cut(s) 805, 927
HinfI GANTC 3 cut(s) 5, 77, 1091
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 1 cut(s) 87
HphI GGTGA 3 cut(s) 53, 1007, 1088
Hpy166II GTNNAC 5 cut(s) 422, 643, 697, 805, 927
Hpy188III TCNNGA 7 cut(s) 50, 492, 606, 633, 749, 857, 1059
Hpy8I GTNNAC 5 cut(s) 422, 643, 697, 805, 927
HpyAV CCTTC 4 cut(s) 489, 603, 666, 1116
HpyCH4III ACNGT 6 cut(s) 17, 275, 511, 620, 833, 1087
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 7 cut(s) 121, 354, 368, 550, 587, 703, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 401, 766, 769, 775, 1002
HpyF3I CTNAG 3 cut(s) 249, 716, 799
HpySE526I ACGT 1 cut(s) 652
Hsp92I GRCGYC 1 cut(s) 996
Hsp92II CATG 8 cut(s) 28, 113, 703, 752, 883, 890, 983, 1098
HspAI GCGC 1 cut(s) 996
KasI GGCGCC 1 cut(s) 995
Ksp22I TGATCA 2 cut(s) 46, 955
KspAI GTTAAC 1 cut(s) 805
LmnI GCTCC 3 cut(s) 137, 409, 505
Lsp1109I GCAGC 5 cut(s) 772, 781, 784, 787, 921
LweI GCATC 1 cut(s) 685
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 4 cut(s) 327, 492, 1071, 1114
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 11
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 3 cut(s) 329, 564, 635
MhlI GDGCHC 1 cut(s) 502
Mly113I GGCGCC 1 cut(s) 996
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 145, 471, 538, 808, 936, 1017, 1067, 1072
MseI TTAA 2 cut(s) 804, 1050
MslI CAYNNNNRTG 1 cut(s) 747
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 3 cut(s) 88, 233, 378
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 2 cut(s) 233, 378
MwoI GCNNNNNNNGC 5 cut(s) 401, 766, 769, 775, 1002
NarI GGCGCC 1 cut(s) 996
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 886
NlaIII CATG 8 cut(s) 28, 113, 703, 752, 883, 890, 983, 1098
NlaIV GGNNCC 4 cut(s) 133, 501, 566, 997
NspI RCATGY 2 cut(s) 28, 703
PagI TCATGA 1 cut(s) 748
PceI AGGCCT 1 cut(s) 1027
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 3 cut(s) 5, 77, 1091
PkrI GCNGC 5 cut(s) 762, 771, 774, 777, 936
PluTI GGCGCC 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 231, 376
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 2 cut(s) 231, 376
PspN4I GGNNCC 4 cut(s) 133, 501, 566, 997
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 3 cut(s) 329, 564, 635
RsaI GTAC 2 cut(s) 421, 835
RsaNI GTAC 2 cut(s) 420, 834
RseI CAYNNNNRTG 1 cut(s) 747
SaqAI TTAA 2 cut(s) 804, 1050
SatI GCNGC 5 cut(s) 761, 770, 773, 776, 935
ScaI AGTACT 1 cut(s) 835
ScrFI CCNGG 3 cut(s) 88, 233, 378
SduI GDGCHC 1 cut(s) 502
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 747
SseBI AGGCCT 1 cut(s) 1027
SsiI CCGC 2 cut(s) 575, 674
SspDI GGCGCC 1 cut(s) 995
SspMI CTAG 4 cut(s) 327, 492, 1071, 1114
StuI AGGCCT 1 cut(s) 1027
StyD4I CCNGG 3 cut(s) 86, 231, 376
StyI CCWWGG 3 cut(s) 425, 886, 907
TaaI ACNGT 6 cut(s) 17, 275, 511, 620, 833, 1087
TaiI ACGT 1 cut(s) 655
TaqI TCGA 7 cut(s) 362, 410, 470, 530, 607, 615, 1058
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 3 cut(s) 5, 77, 1091
Tru1I TTAA 2 cut(s) 804, 1050
Tru9I TTAA 2 cut(s) 804, 1050
TscAI CASTG 2 cut(s) 22, 565
TseI GCWGC 5 cut(s) 760, 769, 772, 775, 934
TspDTI ATGAA 6 cut(s) 93, 207, 372, 765, 1044, 1083
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 22, 565
XapI RAATTY 3 cut(s) 97, 532, 554
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 2 cut(s) 28, 703
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 4 cut(s) 327, 492, 1071, 1114
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.