Rh7AG481000

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011007
Physical Location & Seq
Reverse (-)
67496761 .. 67499070
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG481000.1

Sequence Viewer

Length: 1269 bp
ATGGATTCTGGTAATAGTGGAAGCATGTCTTCAAGTGGTGGTGATGATCAAGACCTTGATATTGTTTCACAGCCTGAATCCGTTTCCGGGTTTCTGAATTCGTCTCATCCCACTATGCAATTTGGTGGCTCCTCCGACAACAACCCGAATCTGTTTTCCCAATACCAGAACCACCACCAACCCAGTACACTTTTTGATCTTTCATCCAATTATCTCCAGGCATTGTCTCAATCTCAGTCACCAAACTCTTCAAATCCCAATTTCCTGCTCAATCAAAGATCCGATCATGAACCAAACTCCACCACCAATACTGGATCCGATCATCAACAAGCCAACTACACCAACTCGATTGCAAACCTACCAGGTTCATCATCATCAGCTCATCAAGCTCCACCGATATCGGGTACACCACGGGGTAGCTATTCGTCTGCCAAGCCCAATAATTTGGTTCGAAACTCGAAGAAGAGGACGAGAGCTTCTAGGAGGGCGCCGACGACCGTTCTGACCACCGACACCTCGAATTTCAGAGCAATGGTGCAGGAATTCACTGGGATCCCAGCACCGCCGTTCTCTGCAGGCTCGTCATCCTACTCTCGAAGGCTCGATAGTATATTTGGCTCCGGATCTGTCTACCCTTTACGTCCTTCGGCTCAAAAGGTCCACCAAACCCCATTTCTATCTTCTTCTTCTTCTTCTTCATTGTTGATGAGCAATAGTGTTAGTATGGTTGATGCTTCTAATATTGCCACTAGTAGTACTAGTCATGATATGAACAACTTCAATTTCACTCATCAAGGCCTACTTGGGAAACAGCTGCCTCATCATCATAATATGATGGTAAACATGCAAAACCCAGCTCTCAGTGCATTCCAGTCATCCCTTCCCCATCATCATGACCAGCAGCAGCAGCCACCTCCATTCCTCTCTTCCTCAATTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCCTTACATCCTCTTGAAGATCAATTGGGTATGACTATGAGCCATGGATATTTAAATAACACAAACCTTGGTGCTTCAGATGGTTCAACAATGCTGCCATTGAGGAGTGATGATAATCATACTGTTAGATGGAGAGATTATGGACTTGGATTGGGCGCAGTCAGCGATGGGAGAGGGGTACTAGATCAAAACCAGCATTTGAGGCCGAATTTGGATCATGGAATAGTTAATTCATCGAGATCAAACACTAGAGGTGAAGCTTCGGTTGATTCATGGATTTGCCCTTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

422

Amino Acids

45.49

Weight (kDa)

6.45

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 162 - 189 2.5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 630
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 1 cut(s) 563
AclWI GGATC 7 cut(s) 273, 309, 322, 547, 560, 631, 1197
AcsI RAATTY 4 cut(s) 97, 520, 542, 1183
AcuI CTGAAG 2 cut(s) 1035, 1245
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 5 cut(s) 187, 406, 757, 967, 1155
AfiI CCNNNNNNNGG 2 cut(s) 87, 401
AgsI TTSAA 5 cut(s) 33, 252, 781, 992, 1062
AhlI ACTAGT 2 cut(s) 749, 758
AjnI CCWGG 2 cut(s) 216, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 7 cut(s) 380, 389, 420, 476, 814, 857, 1235
AluI AGCT 7 cut(s) 380, 389, 420, 476, 814, 857, 1235
Alw26I GTCTC 2 cut(s) 108, 231
AlwI GGATC 7 cut(s) 273, 309, 322, 547, 560, 631, 1197
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 2 cut(s) 796, 1178
ApeKI GCWGC 5 cut(s) 814, 901, 904, 907, 1069
ApoI RAATTY 4 cut(s) 97, 520, 542, 1183
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 2 cut(s) 490, 1133
AspS9I GGNCC 1 cut(s) 658
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 53, 231, 1241
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 658
BamHI GGATCC 2 cut(s) 314, 552
BanI GGYRCC 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 5 cut(s) 801, 913, 916, 919, 1056
BccI CCATC 5 cut(s) 829, 894, 1049, 1098, 1136
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 2 cut(s) 218, 363
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 108, 231
BcuI ACTAGT 2 cut(s) 749, 758
BfaI CTAG 6 cut(s) 480, 750, 759, 1157, 1224, 1267
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 491
BisI GCNGC 5 cut(s) 815, 902, 905, 908, 1070
BlsI GCNGC 5 cut(s) 816, 903, 906, 909, 1071
BmcAI AGTACT 2 cut(s) 757, 967
Bme1390I CCNGG 3 cut(s) 88, 218, 363
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 5 cut(s) 130, 316, 489, 554, 619
BmrFI CCNGG 3 cut(s) 88, 218, 363
BmrI ACTGGG 2 cut(s) 177, 558
BmsI GCATC 1 cut(s) 721
BmuI ACTGGG 2 cut(s) 177, 558
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 1089
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 410, 1018, 1042
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 401
Bse1I ACTGG 4 cut(s) 183, 316, 553, 871
Bse3DI GCAATG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 1089
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 2 cut(s) 218, 363
BseDI CCNNGG 3 cut(s) 410, 1018, 1042
BseGI GGATG 5 cut(s) 106, 203, 584, 875, 982
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 2 cut(s) 87, 401
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 248, 874
BseNI ACTGG 4 cut(s) 183, 316, 553, 871
BseRI GAGGAG 2 cut(s) 121, 1093
BseXI GCAGC 5 cut(s) 801, 913, 916, 919, 1056
BseYI CCCAGC 2 cut(s) 556, 853
BsgI GTGCAG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 798, 1180
BshNI GGYRCC 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 2 cut(s) 87, 621
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 2 cut(s) 87, 401
BsmAI GTCTC 2 cut(s) 108, 231
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 2 cut(s) 798, 1180
Bsp119I TTCGAA 1 cut(s) 451
Bsp13I TCCGGA 1 cut(s) 620
Bsp19I CCATGG 1 cut(s) 1018
BspACI CCGC 1 cut(s) 563
BspANI GGCC 2 cut(s) 798, 1180
BspCNI CTCAG 2 cut(s) 247, 873
BspEI TCCGGA 1 cut(s) 620
BspHI TCATGA 3 cut(s) 286, 763, 892
BspLI GGNNCC 5 cut(s) 130, 316, 489, 554, 619
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 7 cut(s) 273, 309, 322, 547, 560, 631, 1197
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 4 cut(s) 183, 316, 553, 871
BssECI CCNNGG 3 cut(s) 410, 1018, 1042
BssNI GRCGYC 1 cut(s) 488
BssT1I CCWWGG 2 cut(s) 1018, 1042
Bst2UI CCWGG 2 cut(s) 218, 363
Bst4CI ACNGT 3 cut(s) 499, 965, 1099
Bst6I CTCTTC 3 cut(s) 253, 458, 931
BstACI GRCGYC 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 2 cut(s) 234, 860
BstDSI CCRYGG 2 cut(s) 410, 1018
BstF5I GGATG 5 cut(s) 106, 203, 584, 875, 982
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 2 cut(s) 490, 1133
BstMAI GTCTC 2 cut(s) 108, 231
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 5 cut(s) 386, 863, 907, 1137, 1177
BstNI CCWGG 2 cut(s) 218, 363
BstNSI RCATGY 2 cut(s) 28, 847
BstSCI CCNGG 3 cut(s) 86, 216, 361
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 5 cut(s) 801, 913, 916, 919, 1056
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 4 cut(s) 278, 314, 552, 623
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 4 cut(s) 278, 314, 552, 623
BsuRI GGCC 2 cut(s) 798, 1180
BtgI CCRYGG 2 cut(s) 410, 1018
BtgZI GCGATG 1 cut(s) 1155
BtsCI GGATG 5 cut(s) 106, 203, 584, 875, 982
BtsIMutI CAGTG 2 cut(s) 546, 868
Cac8I GCNNGC 1 cut(s) 577
CciI TCATGA 3 cut(s) 286, 763, 892
CfoI GCGC 2 cut(s) 490, 1133
Cfr13I GGNCC 1 cut(s) 658
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 5 cut(s) 186, 405, 756, 966, 1154
CviAII CATG 8 cut(s) 25, 287, 764, 844, 893, 1019, 1193, 1248
CviQI GTAC 5 cut(s) 186, 405, 756, 966, 1154
DdeI CTNAG 2 cut(s) 234, 860
DinI GGCGCC 1 cut(s) 489
DraI TTTAAA 1 cut(s) 1029
Eam1104I CTCTTC 3 cut(s) 253, 458, 931
EarI CTCTTC 3 cut(s) 253, 458, 931
Eco130I CCWWGG 2 cut(s) 1018, 1042
Eco147I AGGCCT 1 cut(s) 798
Eco32I GATATC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 658
Eco57I CTGAAG 2 cut(s) 1035, 1245
EcoRI GAATTC 2 cut(s) 97, 542
EcoRII CCWGG 2 cut(s) 216, 361
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 1018, 1042
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
ErhI CCWWGG 2 cut(s) 1018, 1042
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 8 cut(s) 28, 290, 767, 847, 896, 1022, 1196, 1251
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 786, 818
FaqI GGGAC 1 cut(s) 974
FatI CATG 8 cut(s) 24, 286, 763, 843, 892, 1018, 1192, 1247
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 815, 902, 905, 908, 1070
FokI GGATG 5 cut(s) 93, 190, 571, 862, 969
Fsp4HI GCNGC 5 cut(s) 815, 902, 905, 908, 1070
FspBI CTAG 6 cut(s) 480, 750, 759, 1157, 1224, 1267
GlaI GCGC 2 cut(s) 489, 1132
GluI GCNGC 5 cut(s) 815, 902, 905, 908, 1070
GsaI CCCAGC 2 cut(s) 560, 857
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 2 cut(s) 798, 1180
HapII CCGG 2 cut(s) 87, 621
HhaI GCGC 2 cut(s) 490, 1133
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 8 cut(s) 28, 290, 767, 847, 896, 1022, 1196, 1251
Hin6I GCGC 2 cut(s) 488, 1131
HinP1I GCGC 2 cut(s) 488, 1131
HindIII AAGCTT 1 cut(s) 1233
HinfI GANTC 4 cut(s) 5, 77, 148, 1244
HpaII CCGG 2 cut(s) 87, 621
HphI GGTGA 3 cut(s) 53, 231, 1241
Hpy166II GTNNAC 5 cut(s) 188, 407, 631, 661, 841
Hpy188I TCNGA 8 cut(s) 96, 136, 283, 319, 504, 527, 1054, 1264
Hpy188III TCNNGA 8 cut(s) 50, 287, 594, 621, 764, 893, 989, 1212
Hpy8I GTNNAC 5 cut(s) 188, 407, 631, 661, 841
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 4 cut(s) 591, 654, 890, 1269
HpyCH4III ACNGT 3 cut(s) 499, 965, 1099
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 6 cut(s) 118, 353, 538, 575, 847, 866
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 863, 907, 1137, 1177
HpyF3I CTNAG 2 cut(s) 234, 860
HpySE526I ACGT 1 cut(s) 640
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 8 cut(s) 28, 290, 767, 847, 896, 1022, 1196, 1251
HspAI GCGC 2 cut(s) 488, 1131
KasI GGCGCC 1 cut(s) 487
Kpn2I TCCGGA 1 cut(s) 620
Ksp22I TGATCA 1 cut(s) 46
LmnI GCTCC 3 cut(s) 134, 394, 623
Lsp1109I GCAGC 5 cut(s) 801, 913, 916, 919, 1056
LweI GCATC 1 cut(s) 721
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 6 cut(s) 480, 750, 759, 1157, 1224, 1267
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 1 cut(s) 237
MfeI CAATTG 1 cut(s) 998
MflI RGATCY 4 cut(s) 278, 314, 552, 623
Mly113I GGCGCC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 3 cut(s) 936, 1028, 1203
MslI CAYNNNNRTG 1 cut(s) 891
MspA1I CMGCKG 1 cut(s) 814
MspI CCGG 2 cut(s) 87, 621
MspR9I CCNGG 3 cut(s) 88, 218, 363
MunI CAATTG 1 cut(s) 998
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 2 cut(s) 218, 363
MwoI GCNNNNNNNGC 5 cut(s) 386, 863, 907, 1137, 1177
NarI GGCGCC 1 cut(s) 488
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 1018
NlaIII CATG 8 cut(s) 28, 290, 767, 847, 896, 1022, 1196, 1251
NlaIV GGNNCC 5 cut(s) 130, 316, 489, 554, 619
NmuCI GTSAC 1 cut(s) 237
NspI RCATGY 2 cut(s) 28, 847
NspV TTCGAA 1 cut(s) 451
PagI TCATGA 3 cut(s) 286, 763, 892
PceI AGGCCT 1 cut(s) 798
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 4 cut(s) 5, 77, 148, 1244
PkrI GCNGC 5 cut(s) 816, 903, 906, 909, 1071
PluTI GGCGCC 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 216, 361
PspFI CCCAGC 2 cut(s) 556, 853
PspGI CCWGG 2 cut(s) 216, 361
PspN4I GGNNCC 5 cut(s) 130, 316, 489, 554, 619
PspPI GGNCC 1 cut(s) 658
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 4 cut(s) 278, 314, 552, 623
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 5 cut(s) 187, 406, 757, 967, 1155
RsaNI GTAC 5 cut(s) 186, 405, 756, 966, 1154
RseI CAYNNNNRTG 1 cut(s) 891
SaqAI TTAA 3 cut(s) 936, 1028, 1203
SatI GCNGC 5 cut(s) 815, 902, 905, 908, 1070
Sau96I GGNCC 1 cut(s) 658
ScaI AGTACT 2 cut(s) 757, 967
ScrFI CCNGG 3 cut(s) 88, 218, 363
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 1 cut(s) 721
SfcI CTRYAG 1 cut(s) 573
SfoI GGCGCC 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 658
SmiI ATTTAAAT 1 cut(s) 1029
SmiMI CAYNNNNRTG 1 cut(s) 891
SpeI ACTAGT 2 cut(s) 749, 758
SseBI AGGCCT 1 cut(s) 798
SsiI CCGC 1 cut(s) 563
SspDI GGCGCC 1 cut(s) 487
SspI AATATT 1 cut(s) 742
SspMI CTAG 6 cut(s) 480, 750, 759, 1157, 1224, 1267
StuI AGGCCT 1 cut(s) 798
StyD4I CCNGG 3 cut(s) 86, 216, 361
StyI CCWWGG 2 cut(s) 1018, 1042
SwaI ATTTAAAT 1 cut(s) 1029
TaaI ACNGT 3 cut(s) 499, 965, 1099
TaiI ACGT 1 cut(s) 643
TaqI TCGA 7 cut(s) 347, 451, 458, 518, 595, 603, 1211
TatI WGTACW 3 cut(s) 185, 755, 965
TfiI GAWTC 4 cut(s) 5, 77, 148, 1244
Tru1I TTAA 3 cut(s) 936, 1028, 1203
Tru9I TTAA 3 cut(s) 936, 1028, 1203
TscAI CASTG 2 cut(s) 553, 868
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 5 cut(s) 814, 901, 904, 907, 1069
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 7 cut(s) 192, 303, 357, 687, 785, 1197, 1236
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 553, 868
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 4 cut(s) 97, 520, 542, 1183
XceI RCATGY 2 cut(s) 28, 847
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 6 cut(s) 480, 750, 759, 1157, 1224, 1267
ZrmI AGTACT 2 cut(s) 757, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.