MD15G1366700.v1.1

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011007
Physical Location & Seq
Forward (+)
44596618 .. 44597874
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1366700.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGGATTCTGATAATAGTGAAAGTATGCAATCTTCAAGTGGTGGTGAAGATCAAGACCATGAAATCTCAAGACCCAATTCGATCCCGGGTTACTTGAATTCTCCGACCCAATTGTTTGATTCCTCCGACCCAATAGTGCACCCTTCTCTCCCTTCTCATTACCAAAACCATAACCCCCAACCCACTAACGCAACATTTTTTGATCATCATATCTCATCTCGTAATTATACTTATAATCATTTCCACACAGCATTGTCTCAACCCCAACCAAACTCATCAAACCCAAATTTCATCCCCAACTCAAGATCCAATCAACCCAACTCCACCAACCCAGTTCCCAACCCGCAACCTTCATCAACTACTACTCAAGCTCTCTTAGCTTCTTCAAGAGGAGGACAGACCAACCCCGTTGCCACCCGGAACACAAAGAAGAGGACAAGAGCTTCTAGGAGGGCACCTACCACCGTGCTCACCACCGACACGTCAAATTTCCGAGCAATGGTGCAGGAGTTCACTGGCATCCCAGCACCCCCATTTTCAGCCTCATCGTCATCACCATACGCTCGAAGGCTCGAAATGTTTGGCTCTGGAATAAGGTCACCTCTCCACCCTTTACGCCCGTTGGCTCAAAAGGTTCATCAGCCAACCCCATTTCTATCTTCTTCTACTTCTAATTCTATTTCTTCATTGTTGATGATGATGAACAATAATAGTAGTGCTATGGTTGATGCTACCAATATTGCTACTAGGAATAATAATAGTAACAACAACGTTAATTTCAGTTCAACTAATTACCCATTACTATCTGATCATCATCAAAATCAAGGCCTCTTCCAAAACATGCAAAACCCTATTCTAACATTCCAATCCCTACCGCAGCAGCCTCCTCCATTCCACTCTTCCGTCAGTGTGCCCAATTTTGGGGCAAGACCTAGCCCCCGCGGAGTAATTGGTAATTTAGCCATGCATTCATCACTTGAGGGCCATTTGGCTCTGAACCATCATGGATCATCACCATATGTTAACACAAACCAGCTCGGTAGTGGATCAATAGACGACAGCCACGTGGCAGCTTCAGATGGCAATGATGGCTGGAGGGATCATGGAGTACTTGGATCAAGTGATGGGGGATTATCATCACAAGATCACCATTTGAGGCCTAGTTTGGACAAGTGTTTGGAGATGAATAATGTTAATTCTACTATTAGAGGTGAAGGTGCGGTGGACTCGTGGATTTCTCCGACTTCAGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

419

Amino Acids

45.28

Weight (kDa)

6.61

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 151 - 178 2.5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 454
AccII CGCG 1 cut(s) 942
AciI CCGC 5 cut(s) 344, 875, 940, 942, 1220
AclI AACGTT 1 cut(s) 771
AclWI GGATC 6 cut(s) 76, 300, 1015, 1054, 1107, 1123
AcsI RAATTY 3 cut(s) 97, 286, 487
AcuI CTGAAG 2 cut(s) 1059, 1230
AcvI CACGTG 1 cut(s) 1066
AfaI GTAC 1 cut(s) 1110
AfiI CCNNNNNNNGG 3 cut(s) 499, 920, 921
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 4 cut(s) 36, 97, 387, 786
AjiI CACGTC 1 cut(s) 483
AluBI AGCT 5 cut(s) 371, 380, 443, 1036, 1073
AluI AGCT 5 cut(s) 371, 380, 443, 1036, 1073
Alw21I GWGCWC 2 cut(s) 141, 471
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 6 cut(s) 76, 300, 1015, 1054, 1107, 1123
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 3 cut(s) 826, 982, 1157
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 877, 880, 1070
ApoI RAATTY 3 cut(s) 97, 286, 487
AspS9I GGNCC 1 cut(s) 982
AsuC2I CCSGG 3 cut(s) 86, 87, 418
AsuHPI GGTGA 7 cut(s) 56, 463, 546, 591, 1005, 1139, 1223
AvaI CYCGRG 1 cut(s) 85
BaeGI GKGCMC 3 cut(s) 141, 457, 915
BanI GGYRCC 1 cut(s) 454
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BauI CACGAG 1 cut(s) 1228
BbrPI CACGTG 1 cut(s) 1066
Bbv12I GWGCWC 2 cut(s) 141, 471
BbvI GCAGC 3 cut(s) 889, 892, 1082
BccI CCATC 4 cut(s) 1008, 1073, 1082, 1118
BclI TGATCA 2 cut(s) 202, 808
BcnI CCSGG 3 cut(s) 86, 87, 418
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 5 cut(s) 447, 747, 933, 1161, 1255
BisI GCNGC 3 cut(s) 878, 881, 1071
BlsI GCNGC 3 cut(s) 879, 882, 1072
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 3 cut(s) 86, 87, 418
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 982
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 3 cut(s) 86, 87, 418
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 528, 718
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 1114
BpuEI CTTGAG 4 cut(s) 52, 286, 351, 998
BpuMI CCSGG 3 cut(s) 86, 87, 418
BsaAI YACGTR 1 cut(s) 1066
BsaBI GATNNNNATC 2 cut(s) 813, 1135
BsaJI CCNNGG 2 cut(s) 85, 940
Bsc4I CCNNNNNNNGG 3 cut(s) 499, 920, 921
Bse1I ACTGG 2 cut(s) 332, 520
Bse3DI GCAATG 2 cut(s) 504, 1090
Bse8I GATNNNNATC 2 cut(s) 813, 1135
BseDI CCNNGG 2 cut(s) 85, 940
BseGI GGATG 2 cut(s) 291, 519
BseJI GATNNNNATC 2 cut(s) 813, 1135
BseLI CCNNNNNNNGG 3 cut(s) 499, 920, 921
BseMI GCAATG 2 cut(s) 504, 1090
BseNI ACTGG 2 cut(s) 332, 520
BseRI GAGGAG 2 cut(s) 405, 876
BseSI GKGCMC 3 cut(s) 141, 457, 915
BseXI GCAGC 3 cut(s) 889, 892, 1082
BseYI CCCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 942
BshFI GGCC 3 cut(s) 828, 984, 1159
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 141, 471
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 2 cut(s) 86, 418
BslI CCNNNNNNNGG 3 cut(s) 499, 920, 921
BsmAI GTCTC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 3 cut(s) 828, 984, 1159
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 141, 457, 471, 915
BspACI CCGC 5 cut(s) 344, 875, 940, 942, 1220
BspANI GGCC 3 cut(s) 828, 984, 1159
BspFNI CGCG 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 6 cut(s) 76, 300, 1015, 1054, 1107, 1123
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 504, 1090
BsrI ACTGG 2 cut(s) 332, 520
BssECI CCNNGG 2 cut(s) 85, 940
BssSI CACGAG 1 cut(s) 1228
Bst2BI CACGAG 1 cut(s) 1228
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 3 cut(s) 425, 836, 904
BstBAI YACGTR 1 cut(s) 1066
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 940
BstEII GGTNACC 1 cut(s) 597
BstF5I GGATG 2 cut(s) 291, 519
BstFNI CGCG 1 cut(s) 942
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 377, 1089
BstNSI RCATGY 1 cut(s) 844
BstPI GGTNACC 1 cut(s) 597
BstSCI CCNGG 3 cut(s) 84, 85, 416
BstSLI GKGCMC 3 cut(s) 141, 457, 915
BstUI CGCG 1 cut(s) 942
BstV1I GCAGC 3 cut(s) 889, 892, 1082
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 3 cut(s) 828, 984, 1159
BtgI CCRYGG 1 cut(s) 940
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 2 cut(s) 291, 519
BtsIMutI CAGTG 2 cut(s) 513, 913
Cfr13I GGNCC 1 cut(s) 982
Cfr42I CCGCGG 1 cut(s) 943
Cfr9I CCCGGG 1 cut(s) 85
Csp6I GTAC 1 cut(s) 1109
CviAII CATG 5 cut(s) 59, 841, 964, 1004, 1103
CviQI GTAC 1 cut(s) 1109
DdeI CTNAG 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 425, 836, 904
EarI CTCTTC 3 cut(s) 425, 836, 904
Eco147I AGGCCT 2 cut(s) 828, 1159
Eco57I CTGAAG 2 cut(s) 1059, 1230
Eco72I CACGTG 1 cut(s) 1066
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 597
EcoO65I GGTNACC 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 969
FaeI CATG 5 cut(s) 62, 844, 967, 1007, 1106
FatI CATG 5 cut(s) 58, 840, 963, 1003, 1102
FauI CCCGC 2 cut(s) 351, 947
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 2 cut(s) 202, 808
Fnu4HI GCNGC 3 cut(s) 878, 881, 1071
FokI GGATG 2 cut(s) 278, 506
Fsp4HI GCNGC 3 cut(s) 878, 881, 1071
FspBI CTAG 5 cut(s) 447, 747, 933, 1161, 1255
GluI GCNGC 3 cut(s) 878, 881, 1071
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 3 cut(s) 828, 984, 1159
HapII CCGG 2 cut(s) 86, 418
Hin1II CATG 5 cut(s) 62, 844, 967, 1007, 1106
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HinfI GANTC 3 cut(s) 5, 119, 1226
HpaI GTTAAC 1 cut(s) 1024
HpaII CCGG 2 cut(s) 86, 418
HphI GGTGA 7 cut(s) 56, 463, 546, 591, 1005, 1139, 1223
Hpy166II GTNNAC 4 cut(s) 139, 513, 1024, 1225
Hpy188I TCNGA 9 cut(s) 10, 105, 127, 494, 808, 996, 1078, 1242, 1249
Hpy188III TCNNGA 5 cut(s) 53, 69, 303, 387, 588
Hpy8I GTNNAC 4 cut(s) 139, 513, 1024, 1225
HpyAV CCTTC 5 cut(s) 153, 162, 360, 561, 1208
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 482, 771, 1065
HpyCH4V TGCA 5 cut(s) 28, 139, 505, 844, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 1089
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 3 cut(s) 482, 771, 1065
Hsp92II CATG 5 cut(s) 62, 844, 967, 1007, 1106
Ksp22I TGATCA 2 cut(s) 202, 808
KspAI GTTAAC 1 cut(s) 1024
KspI CCGCGG 1 cut(s) 943
LpnPI CCDG 9 cut(s) 99, 345, 431, 491, 501, 537, 573, 1046, 1078
Lsp1109I GCAGC 3 cut(s) 889, 892, 1082
LweI GCATC 2 cut(s) 528, 718
MaeI CTAG 5 cut(s) 447, 747, 933, 1161, 1255
MaeII ACGT 3 cut(s) 482, 771, 1065
MaeIII GTNAC 3 cut(s) 89, 597, 761
MboII GAAGA 9 cut(s) 24, 59, 375, 442, 651, 654, 675, 823, 891
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 4 cut(s) 141, 457, 471, 915
MlyI GAGTC 1 cut(s) 1220
MmeI TCCRAC 2 cut(s) 128, 150
Mph1103I ATGCAT 1 cut(s) 969
MseI TTAA 3 cut(s) 774, 1023, 1194
MspA1I CMGCKG 1 cut(s) 942
MspI CCGG 2 cut(s) 86, 418
MspR9I CCNGG 3 cut(s) 86, 87, 418
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 967
MvnI CGCG 1 cut(s) 942
MwoI GCNNNNNNNGC 2 cut(s) 377, 1089
NciI CCSGG 3 cut(s) 86, 87, 418
NdeI CATATG 1 cut(s) 1018
NlaIII CATG 5 cut(s) 62, 844, 967, 1007, 1106
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 597
NsiI ATGCAT 1 cut(s) 969
NspI RCATGY 1 cut(s) 844
PceI AGGCCT 2 cut(s) 828, 1159
PcsI WCGNNNNNNNCGW 1 cut(s) 1062
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 2 cut(s) 5, 119
PkrI GCNGC 3 cut(s) 879, 882, 1072
PleI GAGTC 1 cut(s) 1220
PmaCI CACGTG 1 cut(s) 1066
PmlI CACGTG 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1220
Ppu21I YACGTR 1 cut(s) 1066
PsiI TTATAA 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 771
PspCI CACGTG 1 cut(s) 1066
PspEI GGTNACC 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 982
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 1110
RsaNI GTAC 1 cut(s) 1109
SacII CCGCGG 1 cut(s) 943
SaqAI TTAA 3 cut(s) 774, 1023, 1194
SatI GCNGC 3 cut(s) 878, 881, 1071
Sau96I GGNCC 1 cut(s) 982
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 1 cut(s) 1220
ScrFI CCNGG 3 cut(s) 86, 87, 418
SduI GDGCHC 4 cut(s) 141, 457, 471, 915
SfaNI GCATC 2 cut(s) 528, 718
Sfr303I CCGCGG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 943
SmaI CCCGGG 1 cut(s) 87
SmlI CTYRAG 4 cut(s) 67, 301, 366, 977
SmoI CTYRAG 4 cut(s) 67, 301, 366, 977
SseBI AGGCCT 2 cut(s) 828, 1159
SsiI CCGC 5 cut(s) 344, 875, 940, 942, 1220
SspI AATATT 1 cut(s) 739
SspMI CTAG 5 cut(s) 447, 747, 933, 1161, 1255
StuI AGGCCT 2 cut(s) 828, 1159
StyD4I CCNGG 3 cut(s) 84, 85, 416
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 485, 774, 1068
TaqI TCGA 3 cut(s) 80, 565, 573
TatI WGTACW 1 cut(s) 1108
TfiI GAWTC 2 cut(s) 5, 119
Tru1I TTAA 3 cut(s) 774, 1023, 1194
Tru9I TTAA 3 cut(s) 774, 1023, 1194
TscAI CASTG 2 cut(s) 520, 913
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 3 cut(s) 877, 880, 1070
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 8 cut(s) 75, 280, 342, 626, 675, 716, 960, 1199
TspGWI ACGGA 1 cut(s) 892
TspMI CCCGGG 1 cut(s) 85
TspRI CASTG 2 cut(s) 520, 913
VneI GTGCAC 1 cut(s) 137
XapI RAATTY 3 cut(s) 97, 286, 487
XceI RCATGY 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XmaI CCCGGG 1 cut(s) 85
XspI CTAG 5 cut(s) 447, 747, 933, 1161, 1255
ZrmI AGTACT 1 cut(s) 1110
Zsp2I ATGCAT 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.