Rmu_sc0008456.1_g000009

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008456.1
OG0011007
Physical Location & Seq
Reverse (-)
56157 .. 57431
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008456.1_g000009.1.cds

Sequence Viewer

Length: 1275 bp
atggattctggtaatagtggaagcatgtcttcaagtggtggtgatgatcaagaccttgatattgtttcacagcctgaatccgtttccgggtttctgaattcgtctcatcccactatgcaatttggtggctcctccgacaacaacccgaatctgttttcccaataccagaaccaccaccaccaccaacccagtacactttttgatctttcatccaattatctccaggcattgtctcaatctcagtcaccaaactcttcaaatcccaatttcctgctcaatcaaagatccgatcatgaaccaaactccaccaccaatactggatccgatcatcaacaagccaactacaccaactcgattgcaaacctaccaggttcatcatcatcagctcatcaagctccaccgatatcgggtacaccacggggtagctattcgtctgccaagcccaataatttggttcgaaactcgaagaagaggacgagagcttctaggagggcgccgacgaccgttctgaccaccgacacctcgaatttcagagcaatggtgcaggaatttactgggatcccagcaccgccgttctctgcaggctcgtcatcctactctcgaaggctcgatagtatatttggctccggatctgtctaccctttacgtccttcggctcaaaaggtccaccaaaccccatttctatcttcttcttcttcttcttcattgttgatgaacaatagtgttagtatggttgatgcttctaatattgccactagtagtactagtcatgatatgaacaacttcaatttcactcatcaaggcctacttgggaaacagctgcctcatcatcataatatgatggtaaacatgcaaaacccagctctcagtgcattccagtcatcccttccccatcatcatgagcagcagcagcagccacctccattcctctcttcctcaattaactttggggcaaagcctaatagggacagtactactttgcccttacatcctcttgaagatcaattgggtatgactatgagccatggatatttaaataacacaaaccttggtgcttcagatggttcaacaatgctgccattgaggagtgatgataatcatactgttagatggagagattatggacttggattgggcgccgtcagcgatgggagaggggtactagatcaaaaccagcatttgaggcctaatttggatcatggaatagttaattcatcgaggtcaaacactagaggtgaagcttcggttgattcatggatttgcccttcagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

424

Amino Acids

45.81

Weight (kDa)

6.5

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 493, 1136
AccI GTMKAC 1 cut(s) 636
AccIII TCCGGA 1 cut(s) 626
AciI CCGC 1 cut(s) 569
AclWI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1203
AcsI RAATTY 3 cut(s) 97, 526, 548
AcuI CTGAAG 2 cut(s) 1041, 1251
AcyI GRCGYC 2 cut(s) 494, 1137
AfaI GTAC 5 cut(s) 193, 412, 763, 973, 1161
AfiI CCNNNNNNNGG 2 cut(s) 87, 407
AgsI TTSAA 5 cut(s) 33, 258, 787, 998, 1068
AhlI ACTAGT 2 cut(s) 755, 764
AjnI CCWGG 2 cut(s) 222, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 7 cut(s) 386, 395, 426, 482, 820, 863, 1241
AluI AGCT 7 cut(s) 386, 395, 426, 482, 820, 863, 1241
Alw26I GTCTC 2 cut(s) 108, 237
AlwI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1203
Aor13HI TCCGGA 1 cut(s) 626
AoxI GGCC 2 cut(s) 802, 1184
ApeKI GCWGC 6 cut(s) 820, 904, 907, 910, 913, 1075
ApoI RAATTY 3 cut(s) 97, 526, 548
Asp700I GAANNNNTTC 1 cut(s) 782
AspLEI GCGC 2 cut(s) 496, 1139
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 53, 237, 1247
AsuII TTCGAA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 664
BamHI GGATCC 2 cut(s) 320, 558
BanI GGYRCC 2 cut(s) 493, 1136
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 6 cut(s) 807, 916, 919, 922, 925, 1062
BccI CCATC 5 cut(s) 835, 900, 1055, 1104, 1142
BceAI ACGGC 2 cut(s) 556, 1124
BciT130I CCWGG 2 cut(s) 224, 369
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 108, 237
BcuI ACTAGT 2 cut(s) 755, 764
BfaI CTAG 6 cut(s) 486, 756, 765, 1163, 1230, 1273
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 2 cut(s) 497, 1140
BisI GCNGC 6 cut(s) 821, 905, 908, 911, 914, 1076
BlsI GCNGC 6 cut(s) 822, 906, 909, 912, 915, 1077
BmcAI AGTACT 2 cut(s) 763, 973
Bme1390I CCNGG 3 cut(s) 88, 224, 369
Bme18I GGWCC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1138
BmrFI CCNGG 3 cut(s) 88, 224, 369
BmrI ACTGGG 2 cut(s) 183, 564
BmsI GCATC 1 cut(s) 727
BmuI ACTGGG 2 cut(s) 183, 564
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 1095
BsaHI GRCGYC 2 cut(s) 494, 1137
BsaJI CCNNGG 3 cut(s) 416, 1024, 1048
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 407
Bse1I ACTGG 4 cut(s) 189, 322, 559, 877
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 1095
BseAI TCCGGA 1 cut(s) 626
BseBI CCWGG 2 cut(s) 224, 369
BseDI CCNNGG 3 cut(s) 416, 1024, 1048
BseGI GGATG 5 cut(s) 106, 209, 590, 881, 988
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 2 cut(s) 87, 407
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 254, 880
BseNI ACTGG 4 cut(s) 189, 322, 559, 877
BseRI GAGGAG 2 cut(s) 121, 1099
BseXI GCAGC 6 cut(s) 807, 916, 919, 922, 925, 1062
BseYI CCCAGC 2 cut(s) 562, 859
BsgI GTGCAG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 804, 1186
BshNI GGYRCC 2 cut(s) 493, 1136
BsiEI CGRYCG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 87, 627
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 2 cut(s) 87, 407
BsmAI GTCTC 2 cut(s) 108, 237
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 980
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 2 cut(s) 804, 1186
Bsp119I TTCGAA 1 cut(s) 457
Bsp13I TCCGGA 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 1024
BspACI CCGC 1 cut(s) 569
BspANI GGCC 2 cut(s) 804, 1186
BspCNI CTCAG 2 cut(s) 253, 879
BspEI TCCGGA 1 cut(s) 626
BspHI TCATGA 3 cut(s) 292, 769, 898
BspLI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1138
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1203
BspT104I TTCGAA 1 cut(s) 457
BspT107I GGYRCC 2 cut(s) 493, 1136
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 4 cut(s) 189, 322, 559, 877
BssECI CCNNGG 3 cut(s) 416, 1024, 1048
BssNI GRCGYC 2 cut(s) 494, 1137
BssT1I CCWWGG 2 cut(s) 1024, 1048
Bst2UI CCWGG 2 cut(s) 224, 369
Bst4CI ACNGT 3 cut(s) 505, 971, 1105
Bst6I CTCTTC 3 cut(s) 259, 464, 937
BstACI GRCGYC 2 cut(s) 494, 1137
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 2 cut(s) 240, 866
BstDSI CCRYGG 2 cut(s) 416, 1024
BstF5I GGATG 5 cut(s) 106, 209, 590, 881, 988
BstH2I RGCGCY 2 cut(s) 497, 1140
BstHHI GCGC 2 cut(s) 496, 1139
BstMAI GTCTC 2 cut(s) 108, 237
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 6 cut(s) 392, 869, 910, 913, 1143, 1183
BstNI CCWGG 2 cut(s) 224, 369
BstNSI RCATGY 2 cut(s) 28, 853
BstSCI CCNGG 3 cut(s) 86, 222, 367
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 6 cut(s) 807, 916, 919, 922, 925, 1062
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 4 cut(s) 284, 320, 558, 629
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 4 cut(s) 284, 320, 558, 629
BsuRI GGCC 2 cut(s) 804, 1186
BtgI CCRYGG 2 cut(s) 416, 1024
BtgZI GCGATG 1 cut(s) 1161
BtsCI GGATG 5 cut(s) 106, 209, 590, 881, 988
BtsIMutI CAGTG 1 cut(s) 874
Cac8I GCNNGC 1 cut(s) 583
CciI TCATGA 3 cut(s) 292, 769, 898
CfoI GCGC 2 cut(s) 496, 1139
Cfr13I GGNCC 1 cut(s) 664
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 5 cut(s) 192, 411, 762, 972, 1160
CviAII CATG 8 cut(s) 25, 293, 770, 850, 899, 1025, 1199, 1254
CviQI GTAC 5 cut(s) 192, 411, 762, 972, 1160
DdeI CTNAG 2 cut(s) 240, 866
DinI GGCGCC 2 cut(s) 495, 1138
DraI TTTAAA 1 cut(s) 1035
Eam1104I CTCTTC 3 cut(s) 259, 464, 937
EarI CTCTTC 3 cut(s) 259, 464, 937
Eco130I CCWWGG 2 cut(s) 1024, 1048
Eco147I AGGCCT 2 cut(s) 804, 1186
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 2 cut(s) 1041, 1251
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 222, 367
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 1024, 1048
EgeI GGCGCC 2 cut(s) 495, 1138
EheI GGCGCC 2 cut(s) 495, 1138
ErhI CCWWGG 2 cut(s) 1024, 1048
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 8 cut(s) 28, 296, 773, 853, 902, 1028, 1202, 1257
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 792, 824
FaqI GGGAC 1 cut(s) 980
FatI CATG 8 cut(s) 24, 292, 769, 849, 898, 1024, 1198, 1253
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 821, 905, 908, 911, 914, 1076
FokI GGATG 5 cut(s) 93, 196, 577, 868, 975
Fsp4HI GCNGC 6 cut(s) 821, 905, 908, 911, 914, 1076
FspBI CTAG 6 cut(s) 486, 756, 765, 1163, 1230, 1273
GlaI GCGC 2 cut(s) 495, 1138
GluI GCNGC 6 cut(s) 821, 905, 908, 911, 914, 1076
GsaI CCCAGC 2 cut(s) 566, 863
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 497, 1140
HaeIII GGCC 2 cut(s) 804, 1186
HapII CCGG 2 cut(s) 87, 627
HhaI GCGC 2 cut(s) 496, 1139
Hin1I GRCGYC 2 cut(s) 494, 1137
Hin1II CATG 8 cut(s) 28, 296, 773, 853, 902, 1028, 1202, 1257
Hin6I GCGC 2 cut(s) 494, 1137
HinP1I GCGC 2 cut(s) 494, 1137
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 4 cut(s) 5, 77, 148, 1250
HpaII CCGG 2 cut(s) 87, 627
HphI GGTGA 3 cut(s) 53, 237, 1247
Hpy166II GTNNAC 5 cut(s) 194, 413, 637, 667, 847
Hpy188I TCNGA 8 cut(s) 96, 136, 289, 325, 510, 533, 1060, 1270
Hpy188III TCNNGA 7 cut(s) 50, 293, 600, 627, 770, 899, 995
Hpy8I GTNNAC 5 cut(s) 194, 413, 637, 667, 847
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 4 cut(s) 597, 660, 896, 1275
HpyCH4III ACNGT 3 cut(s) 505, 971, 1105
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 6 cut(s) 118, 359, 544, 581, 853, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 869, 910, 913, 1143, 1183
HpyF3I CTNAG 2 cut(s) 240, 866
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 2 cut(s) 494, 1137
Hsp92II CATG 8 cut(s) 28, 296, 773, 853, 902, 1028, 1202, 1257
HspAI GCGC 2 cut(s) 494, 1137
KasI GGCGCC 2 cut(s) 493, 1136
Kpn2I TCCGGA 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 46
LmnI GCTCC 3 cut(s) 134, 400, 629
Lsp1109I GCAGC 6 cut(s) 807, 916, 919, 922, 925, 1062
LweI GCATC 1 cut(s) 727
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 6 cut(s) 486, 756, 765, 1163, 1230, 1273
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 243
MfeI CAATTG 1 cut(s) 1004
MflI RGATCY 4 cut(s) 284, 320, 558, 629
Mly113I GGCGCC 2 cut(s) 494, 1137
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 3 cut(s) 942, 1034, 1209
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 820
MspI CCGG 2 cut(s) 87, 627
MspR9I CCNGG 3 cut(s) 88, 224, 369
MunI CAATTG 1 cut(s) 1004
Mva1269I GAATGC 1 cut(s) 872
MvaI CCWGG 2 cut(s) 224, 369
MwoI GCNNNNNNNGC 6 cut(s) 392, 869, 910, 913, 1143, 1183
NarI GGCGCC 2 cut(s) 494, 1137
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 1024
NlaIII CATG 8 cut(s) 28, 296, 773, 853, 902, 1028, 1202, 1257
NlaIV GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1138
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 28, 853
NspV TTCGAA 1 cut(s) 457
PagI TCATGA 3 cut(s) 292, 769, 898
PceI AGGCCT 2 cut(s) 804, 1186
PctI GAATGC 1 cut(s) 872
PdmI GAANNNNTTC 1 cut(s) 782
PfeI GAWTC 4 cut(s) 5, 77, 148, 1250
PkrI GCNGC 6 cut(s) 822, 906, 909, 912, 915, 1077
PluTI GGCGCC 2 cut(s) 497, 1140
Psp6I CCWGG 2 cut(s) 222, 367
PspFI CCCAGC 2 cut(s) 562, 859
PspGI CCWGG 2 cut(s) 222, 367
PspN4I GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1138
PspPI GGNCC 1 cut(s) 664
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 4 cut(s) 284, 320, 558, 629
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 5 cut(s) 193, 412, 763, 973, 1161
RsaNI GTAC 5 cut(s) 192, 411, 762, 972, 1160
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 3 cut(s) 942, 1034, 1209
SatI GCNGC 6 cut(s) 821, 905, 908, 911, 914, 1076
Sau96I GGNCC 1 cut(s) 664
ScaI AGTACT 2 cut(s) 763, 973
ScrFI CCNGG 3 cut(s) 88, 224, 369
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 1 cut(s) 579
SfoI GGCGCC 2 cut(s) 495, 1138
SfuI TTCGAA 1 cut(s) 457
SinI GGWCC 1 cut(s) 664
SmiI ATTTAAAT 1 cut(s) 1035
SmiMI CAYNNNNRTG 1 cut(s) 897
SpeI ACTAGT 2 cut(s) 755, 764
SseBI AGGCCT 2 cut(s) 804, 1186
SsiI CCGC 1 cut(s) 569
SspDI GGCGCC 2 cut(s) 493, 1136
SspI AATATT 1 cut(s) 748
SspMI CTAG 6 cut(s) 486, 756, 765, 1163, 1230, 1273
StuI AGGCCT 2 cut(s) 804, 1186
StyD4I CCNGG 3 cut(s) 86, 222, 367
StyI CCWWGG 2 cut(s) 1024, 1048
SwaI ATTTAAAT 1 cut(s) 1035
TaaI ACNGT 3 cut(s) 505, 971, 1105
TaiI ACGT 1 cut(s) 649
TaqI TCGA 7 cut(s) 353, 457, 464, 524, 601, 609, 1217
TatI WGTACW 3 cut(s) 191, 761, 971
TfiI GAWTC 4 cut(s) 5, 77, 148, 1250
Tru1I TTAA 3 cut(s) 942, 1034, 1209
Tru9I TTAA 3 cut(s) 942, 1034, 1209
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 6 cut(s) 820, 904, 907, 910, 913, 1075
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 8 cut(s) 198, 309, 363, 693, 728, 791, 1203, 1242
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 3 cut(s) 97, 526, 548
XceI RCATGY 2 cut(s) 28, 853
XmiI GTMKAC 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 6 cut(s) 486, 756, 765, 1163, 1230, 1273
ZrmI AGTACT 2 cut(s) 763, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.