Rw7G040310

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011007
Physical Location & Seq
Reverse (-)
62454662 .. 62455932
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040310.1

Sequence Viewer

Length: 1224 bp
ATGGATTCTGGTAATAGTGGAAGCATGTCTTCAAGTGGTGGTGATGATCAAGACCTTGATATTGTTTCACAGCCTGAATCCGTTTCCGGGTTTCTGAATTCGTCTCATCCCACTATGCAATTTGGTGGCTCCTCCGACAACAACCCGAATCTGTTTTCCCAATATCAGAACCACCACCACCACCAACCCAGTACACTTTTTGATCTTTCATCCAATTATCTCCAGGCATTGTCTCAATCTCAGTCACCAAACTCTTCAAATCCCAATTTCCTGCTCAATCAAAGATCCGATCATGAACCAAACTCCACCACCAATACTGGATCCGATCATCAACAAGCCAACTACACCAACTCGATTGCAAACCTACCAGGTTCATCATCATCAGCTCATCAAGCTCCACCGATATCGGGTACACCACGGGGTAGCTATTCGTCTGCCAAGCCCAATAATTTGGTCCGAAACTCGAAGAAGAGGACGAGAGCTTCTAGGAGGGCGCCGACGACCGTTCTGACCACCGACACCTCGAATTTCAGAGCAATGGTGCAGGAATTCACTGGGATCCCAGCACCACCGTTCTCTGCAGGCTCGTCATCCTACTCTCGAAGGCTTGATAGTATATTTGGCTCCGGATCTGTCTACCCTTTACGTCCTTCGGCTCAAAAGGTCCACCAAACCCCATTTCTATCTTCTTCTTCTTCTTCATTGTTGATGAGCAATAGTGTTAATATGGTTGATGCTTCTAATATTGCCACTAGTAGTACTAGTCATGATATGAACAACTTCAATTTCACTCATCAAGGTCTACTTGGGAAACAGCTGCCTCATCATCATAATATGATGGTAAACATGCAAAACCCAGCTCTCACCACCTCCATTCTCTCTTCCTCAATTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCCTTACATCCTCTTGAAGATCAATTGGGTATGACTATGAGCCATGGATATTTAAATAACACAAACCTTGGTGCTTCAGATGGTTCAACAATGCTGCCATTGAGGAGTGATGATAATCATACTGTTAGATGGAGAGATTATGGACTTGGATTGGGCGCCGTCAGCGATGGGAGAGGGGTACTAGATCAAAACCAGCATTTGAGGCCTAATTTGGATCATGGAATAGTTAATTCATCGAGATCAAACACTAGAGGTGAAGCTTCGGTTGATTCATGGATTTGCCCTTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

407

Amino Acids

43.82

Weight (kDa)

6.54

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 164 - 191 2.4e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 493, 1085
AccI GTMKAC 2 cut(s) 636, 802
AccIII TCCGGA 1 cut(s) 626
AclWI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1152
AcsI RAATTY 3 cut(s) 97, 526, 548
AcuI CTGAAG 2 cut(s) 990, 1200
AcyI GRCGYC 2 cut(s) 494, 1086
AfaI GTAC 5 cut(s) 193, 412, 760, 922, 1110
AfiI CCNNNNNNNGG 2 cut(s) 87, 407
AgsI TTSAA 5 cut(s) 33, 258, 784, 947, 1017
AhlI ACTAGT 2 cut(s) 752, 761
AjnI CCWGG 2 cut(s) 222, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 7 cut(s) 386, 395, 426, 482, 817, 860, 1190
AluI AGCT 7 cut(s) 386, 395, 426, 482, 817, 860, 1190
Alw26I GTCTC 2 cut(s) 108, 237
AlwI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1152
Aor13HI TCCGGA 1 cut(s) 626
AoxI GGCC 1 cut(s) 1133
ApeKI GCWGC 2 cut(s) 817, 1024
ApoI RAATTY 3 cut(s) 97, 526, 548
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 2 cut(s) 496, 1088
AspS9I GGNCC 2 cut(s) 454, 664
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 4 cut(s) 53, 237, 856, 1196
AvaII GGWCC 2 cut(s) 454, 664
BamHI GGATCC 2 cut(s) 320, 558
BanI GGYRCC 2 cut(s) 493, 1085
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 804, 1011
BccI CCATC 4 cut(s) 832, 1004, 1053, 1091
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 2 cut(s) 224, 369
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 108, 237
BcuI ACTAGT 2 cut(s) 752, 761
BfaI CTAG 6 cut(s) 486, 753, 762, 1112, 1179, 1222
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 2 cut(s) 497, 1089
BisI GCNGC 2 cut(s) 818, 1025
BlsI GCNGC 2 cut(s) 819, 1026
BmcAI AGTACT 2 cut(s) 760, 922
Bme1390I CCNGG 3 cut(s) 88, 224, 369
Bme18I GGWCC 2 cut(s) 454, 664
BmgT120I GGNCC 2 cut(s) 454, 664
BmiI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1087
BmrFI CCNGG 3 cut(s) 88, 224, 369
BmrI ACTGGG 2 cut(s) 183, 564
BmsI GCATC 1 cut(s) 724
BmuI ACTGGG 2 cut(s) 183, 564
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 1044
BsaHI GRCGYC 2 cut(s) 494, 1086
BsaJI CCNNGG 3 cut(s) 416, 973, 997
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 407
Bse1I ACTGG 3 cut(s) 189, 322, 559
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 1044
BseAI TCCGGA 1 cut(s) 626
BseBI CCWGG 2 cut(s) 224, 369
BseDI CCNNGG 3 cut(s) 416, 973, 997
BseGI GGATG 4 cut(s) 106, 209, 590, 937
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 2 cut(s) 87, 407
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 3 cut(s) 189, 322, 559
BseRI GAGGAG 2 cut(s) 121, 1048
BseXI GCAGC 2 cut(s) 804, 1011
BseYI CCCAGC 2 cut(s) 562, 856
BsgI GTGCAG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 1 cut(s) 1135
BshNI GGYRCC 2 cut(s) 493, 1085
BsiEI CGRYCG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 87, 627
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 2 cut(s) 87, 407
BsmAI GTCTC 2 cut(s) 108, 237
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 929
BsnI GGCC 1 cut(s) 1135
Bsp13I TCCGGA 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 973
BspANI GGCC 1 cut(s) 1135
BspCNI CTCAG 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 626
BspHI TCATGA 2 cut(s) 292, 766
BspLI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1087
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1152
BspT107I GGYRCC 2 cut(s) 493, 1085
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 3 cut(s) 189, 322, 559
BssECI CCNNGG 3 cut(s) 416, 973, 997
BssNI GRCGYC 2 cut(s) 494, 1086
BssT1I CCWWGG 2 cut(s) 973, 997
Bst2UI CCWGG 2 cut(s) 224, 369
Bst4CI ACNGT 4 cut(s) 505, 573, 920, 1054
Bst6I CTCTTC 3 cut(s) 259, 464, 886
BstACI GRCGYC 2 cut(s) 494, 1086
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 2 cut(s) 416, 973
BstF5I GGATG 4 cut(s) 106, 209, 590, 937
BstH2I RGCGCY 2 cut(s) 497, 1089
BstHHI GCGC 2 cut(s) 496, 1088
BstMAI GTCTC 2 cut(s) 108, 237
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 3 cut(s) 392, 1092, 1132
BstNI CCWGG 2 cut(s) 224, 369
BstNSI RCATGY 2 cut(s) 28, 850
BstSCI CCNGG 3 cut(s) 86, 222, 367
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 804, 1011
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 4 cut(s) 284, 320, 558, 629
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 4 cut(s) 284, 320, 558, 629
BsuRI GGCC 1 cut(s) 1135
BtgI CCRYGG 2 cut(s) 416, 973
BtgZI GCGATG 1 cut(s) 1110
BtsCI GGATG 4 cut(s) 106, 209, 590, 937
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 583
CciI TCATGA 2 cut(s) 292, 766
CfoI GCGC 2 cut(s) 496, 1088
Cfr13I GGNCC 2 cut(s) 454, 664
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 5 cut(s) 192, 411, 759, 921, 1109
CviAII CATG 7 cut(s) 25, 293, 767, 847, 974, 1148, 1203
CviQI GTAC 5 cut(s) 192, 411, 759, 921, 1109
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 2 cut(s) 495, 1087
DraI TTTAAA 1 cut(s) 984
Eam1104I CTCTTC 3 cut(s) 259, 464, 886
EarI CTCTTC 3 cut(s) 259, 464, 886
Eco130I CCWWGG 2 cut(s) 973, 997
Eco147I AGGCCT 1 cut(s) 1135
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 454, 664
Eco57I CTGAAG 2 cut(s) 990, 1200
EcoRI GAATTC 2 cut(s) 97, 548
EcoRII CCWGG 2 cut(s) 222, 367
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 973, 997
EgeI GGCGCC 2 cut(s) 495, 1087
EheI GGCGCC 2 cut(s) 495, 1087
ErhI CCWWGG 2 cut(s) 973, 997
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 7 cut(s) 28, 296, 770, 850, 977, 1151, 1206
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 789, 821
FaqI GGGAC 1 cut(s) 929
FatI CATG 7 cut(s) 24, 292, 766, 846, 973, 1147, 1202
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 2 cut(s) 636, 802
Fnu4HI GCNGC 2 cut(s) 818, 1025
FokI GGATG 4 cut(s) 93, 196, 577, 924
Fsp4HI GCNGC 2 cut(s) 818, 1025
FspBI CTAG 6 cut(s) 486, 753, 762, 1112, 1179, 1222
GlaI GCGC 2 cut(s) 495, 1087
GluI GCNGC 2 cut(s) 818, 1025
GsaI CCCAGC 2 cut(s) 566, 860
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 497, 1089
HaeIII GGCC 1 cut(s) 1135
HapII CCGG 2 cut(s) 87, 627
HhaI GCGC 2 cut(s) 496, 1088
Hin1I GRCGYC 2 cut(s) 494, 1086
Hin1II CATG 7 cut(s) 28, 296, 770, 850, 977, 1151, 1206
Hin6I GCGC 2 cut(s) 494, 1086
HinP1I GCGC 2 cut(s) 494, 1086
HindIII AAGCTT 1 cut(s) 1188
HinfI GANTC 4 cut(s) 5, 77, 148, 1199
HpaII CCGG 2 cut(s) 87, 627
HphI GGTGA 4 cut(s) 53, 237, 856, 1196
Hpy166II GTNNAC 6 cut(s) 194, 413, 637, 667, 803, 844
Hpy188III TCNNGA 7 cut(s) 50, 293, 600, 627, 767, 944, 1167
Hpy8I GTNNAC 6 cut(s) 194, 413, 637, 667, 803, 844
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 3 cut(s) 597, 660, 1224
HpyCH4III ACNGT 4 cut(s) 505, 573, 920, 1054
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 5 cut(s) 118, 359, 544, 581, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 1092, 1132
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 2 cut(s) 494, 1086
Hsp92II CATG 7 cut(s) 28, 296, 770, 850, 977, 1151, 1206
HspAI GCGC 2 cut(s) 494, 1086
KasI GGCGCC 2 cut(s) 493, 1085
Kpn2I TCCGGA 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 46
LmnI GCTCC 3 cut(s) 134, 400, 629
Lsp1109I GCAGC 2 cut(s) 804, 1011
LweI GCATC 1 cut(s) 724
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 6 cut(s) 486, 753, 762, 1112, 1179, 1222
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 243
MfeI CAATTG 1 cut(s) 953
MflI RGATCY 4 cut(s) 284, 320, 558, 629
Mly113I GGCGCC 2 cut(s) 494, 1086
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 4 cut(s) 723, 891, 983, 1158
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 2 cut(s) 87, 627
MspR9I CCNGG 3 cut(s) 88, 224, 369
MunI CAATTG 1 cut(s) 953
MvaI CCWGG 2 cut(s) 224, 369
MwoI GCNNNNNNNGC 3 cut(s) 392, 1092, 1132
NarI GGCGCC 2 cut(s) 494, 1086
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 973
NlaIII CATG 7 cut(s) 28, 296, 770, 850, 977, 1151, 1206
NlaIV GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1087
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 28, 850
PagI TCATGA 2 cut(s) 292, 766
PceI AGGCCT 1 cut(s) 1135
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 5, 77, 148, 1199
PkrI GCNGC 2 cut(s) 819, 1026
PluTI GGCGCC 2 cut(s) 497, 1089
Psp6I CCWGG 2 cut(s) 222, 367
PspFI CCCAGC 2 cut(s) 562, 856
PspGI CCWGG 2 cut(s) 222, 367
PspN4I GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 1087
PspPI GGNCC 2 cut(s) 454, 664
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 4 cut(s) 284, 320, 558, 629
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 5 cut(s) 193, 412, 760, 922, 1110
RsaNI GTAC 5 cut(s) 192, 411, 759, 921, 1109
SaqAI TTAA 4 cut(s) 723, 891, 983, 1158
SatI GCNGC 2 cut(s) 818, 1025
Sau96I GGNCC 2 cut(s) 454, 664
ScaI AGTACT 2 cut(s) 760, 922
ScrFI CCNGG 3 cut(s) 88, 224, 369
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 579
SfoI GGCGCC 2 cut(s) 495, 1087
SinI GGWCC 2 cut(s) 454, 664
SmiI ATTTAAAT 1 cut(s) 984
SpeI ACTAGT 2 cut(s) 752, 761
SseBI AGGCCT 1 cut(s) 1135
SspDI GGCGCC 2 cut(s) 493, 1085
SspI AATATT 1 cut(s) 745
SspMI CTAG 6 cut(s) 486, 753, 762, 1112, 1179, 1222
StuI AGGCCT 1 cut(s) 1135
StyD4I CCNGG 3 cut(s) 86, 222, 367
StyI CCWWGG 2 cut(s) 973, 997
SwaI ATTTAAAT 1 cut(s) 984
TaaI ACNGT 4 cut(s) 505, 573, 920, 1054
TaiI ACGT 1 cut(s) 649
TaqI TCGA 5 cut(s) 353, 464, 524, 601, 1166
TatI WGTACW 3 cut(s) 191, 758, 920
TfiI GAWTC 4 cut(s) 5, 77, 148, 1199
Tru1I TTAA 4 cut(s) 723, 891, 983, 1158
Tru9I TTAA 4 cut(s) 723, 891, 983, 1158
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 817, 1024
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 7 cut(s) 198, 309, 363, 690, 788, 1152, 1191
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 454, 664
XapI RAATTY 3 cut(s) 97, 526, 548
XceI RCATGY 2 cut(s) 28, 850
XmiI GTMKAC 2 cut(s) 636, 802
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 6 cut(s) 486, 753, 762, 1112, 1179, 1222
ZrmI AGTACT 2 cut(s) 760, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.