RchiOBHm_Chr7g0239391

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011007
Physical Location & Seq
Reverse (-)
64832262 .. 64833184
923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21453

Sequence Viewer

Length: 738 bp
ATGGTGCAGGAATTCACTGGGATCCCAGCACCGCCGTTCTCTGCAGGCTCGTCATCCTACTCTCGAAGGCTCGATAGTATATTTGGCTCCGGATCTGTCTACCCTTTACGTCCTTCGGCTCAAAAGGTCCACCAAACCCCATTTCTATCTTCTTCTTCTTCTTCTTCATTGTTGATGAGCAATAGTGTTAGTATGGTTGATGCTTCTAATATTGCCACTAGTAGTACTAGTCATGATATGAACAACTTCAATTTCACTCATCAAGGCCTACTTGGGAAACAGCTGCCTCATCATCATAATATGATGGTAAACATGCAAAACCCAGCTCTCAGTGCATTCCAGTCATCCCTTCCCCATCATCATGACCAGCAGCAGCAGCCACCTCCATTCCTCTCTTCCTCAATTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCCTTACATCCTCTTGAAGATCAATTGGGTATGACTATGAGCCATGGATATTTAAATAACACAAACCTTGGTGCTTCAGATGGTTCAACAATGCTGCCATTGAGGAGTGATGATAATCATACTGTTAGATGGAGAGATTATGGACTTGGATTGGGCGCAGTCAGCGATGGGAGAGGGGTACTAGATCAAAACCAGCATTTGAGGCCGAATTTGGATCATGGAATAGTTAATTCATCGAGATCAAACACTAGAGGTGAAGCTTCGGTTGATTCATGGATTTGCCCTTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

245

Amino Acids

26.59

Weight (kDa)

6.37

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 1 cut(s) 32
AclWI GGATC 4 cut(s) 16, 29, 100, 666
AcsI RAATTY 2 cut(s) 11, 652
AcuI CTGAAG 2 cut(s) 504, 714
AfaI GTAC 3 cut(s) 226, 436, 624
AgsI TTSAA 3 cut(s) 250, 461, 531
AhlI ACTAGT 2 cut(s) 218, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 283, 326, 704
AluI AGCT 3 cut(s) 283, 326, 704
AlwI GGATC 4 cut(s) 16, 29, 100, 666
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 2 cut(s) 265, 647
ApeKI GCWGC 5 cut(s) 283, 370, 373, 376, 538
ApoI RAATTY 2 cut(s) 11, 652
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 710
AvaII GGWCC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 21
BbvI GCAGC 5 cut(s) 270, 382, 385, 388, 525
BccI CCATC 5 cut(s) 298, 363, 518, 567, 605
BceAI ACGGC 1 cut(s) 19
BcuI ACTAGT 2 cut(s) 218, 227
BfaI CTAG 5 cut(s) 219, 228, 626, 693, 736
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 5 cut(s) 284, 371, 374, 377, 539
BlsI GCNGC 5 cut(s) 285, 372, 375, 378, 540
BmcAI AGTACT 2 cut(s) 226, 436
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 23, 88
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 487, 511
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 22, 340
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 487, 511
BseGI GGATG 3 cut(s) 53, 344, 451
BseJI GATNNNNATC 1 cut(s) 558
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 2 cut(s) 22, 340
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 5 cut(s) 270, 382, 385, 388, 525
BseYI CCCAGC 2 cut(s) 25, 322
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 267, 649
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 267, 649
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 6 cut(s) 21, 92, 463, 628, 658, 683
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 267, 649
BspCNI CTCAG 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 89
BspHI TCATGA 2 cut(s) 232, 361
BspLI GGNNCC 2 cut(s) 23, 88
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 4 cut(s) 16, 29, 100, 666
BsrI ACTGG 2 cut(s) 22, 340
BssECI CCNNGG 2 cut(s) 487, 511
BssMI GATC 6 cut(s) 21, 92, 463, 628, 658, 683
BssT1I CCWWGG 2 cut(s) 487, 511
Bst4CI ACNGT 2 cut(s) 434, 568
Bst6I CTCTTC 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 3 cut(s) 53, 344, 451
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 6 cut(s) 24, 95, 466, 631, 661, 686
BstMBI GATC 6 cut(s) 21, 92, 463, 628, 658, 683
BstMWI GCNNNNNNNGC 4 cut(s) 332, 376, 606, 646
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 270, 382, 385, 388, 525
BstX2I RGATCY 2 cut(s) 21, 92
BstYI RGATCY 2 cut(s) 21, 92
BsuRI GGCC 2 cut(s) 267, 649
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 624
BtsCI GGATG 3 cut(s) 53, 344, 451
BtsIMutI CAGTG 2 cut(s) 15, 337
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 2 cut(s) 232, 361
CfoI GCGC 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 3 cut(s) 225, 435, 623
CviAII CATG 6 cut(s) 233, 313, 362, 488, 662, 717
CviQI GTAC 3 cut(s) 225, 435, 623
DdeI CTNAG 1 cut(s) 329
DpnI GATC 6 cut(s) 23, 94, 465, 630, 660, 685
DpnII GATC 6 cut(s) 21, 92, 463, 628, 658, 683
DraI TTTAAA 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 487, 511
Eco147I AGGCCT 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 504, 714
EcoRI GAATTC 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 487, 511
ErhI CCWWGG 2 cut(s) 487, 511
FaeI CATG 6 cut(s) 236, 316, 365, 491, 665, 720
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 443
FatI CATG 6 cut(s) 232, 312, 361, 487, 661, 716
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 284, 371, 374, 377, 539
FokI GGATG 3 cut(s) 40, 331, 438
Fsp4HI GCNGC 5 cut(s) 284, 371, 374, 377, 539
FspBI CTAG 5 cut(s) 219, 228, 626, 693, 736
GlaI GCGC 1 cut(s) 601
GluI GCNGC 5 cut(s) 284, 371, 374, 377, 539
GsaI CCCAGC 2 cut(s) 29, 326
HaeIII GGCC 2 cut(s) 267, 649
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 602
Hin1II CATG 6 cut(s) 236, 316, 365, 491, 665, 720
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 1 cut(s) 713
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 3 cut(s) 100, 130, 310
Hpy188I TCNGA 2 cut(s) 523, 733
Hpy188III TCNNGA 6 cut(s) 63, 90, 233, 362, 458, 681
Hpy8I GTNNAC 3 cut(s) 100, 130, 310
HpyAV CCTTC 4 cut(s) 60, 123, 359, 738
HpyCH4III ACNGT 2 cut(s) 434, 568
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 7, 44, 316, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 376, 606, 646
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 6 cut(s) 236, 316, 365, 491, 665, 720
HspAI GCGC 1 cut(s) 600
Kpn2I TCCGGA 1 cut(s) 89
Kzo9I GATC 6 cut(s) 21, 92, 463, 628, 658, 683
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 3, 30, 39, 103, 336, 353, 380, 650
Lsp1109I GCAGC 5 cut(s) 270, 382, 385, 388, 525
LweI GCATC 1 cut(s) 190
MaeI CTAG 5 cut(s) 219, 228, 626, 693, 736
MaeII ACGT 1 cut(s) 109
MalI GATC 6 cut(s) 23, 94, 465, 630, 660, 685
MboI GATC 6 cut(s) 21, 92, 463, 628, 658, 683
MboII GAAGA 8 cut(s) 141, 144, 147, 150, 153, 156, 387, 473
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 2 cut(s) 21, 92
MluCI AATT 6 cut(s) 11, 250, 402, 467, 652, 673
MnlI CCTC 9 cut(s) 297, 393, 401, 409, 465, 540, 611, 639, 689
MroI TCCGGA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 3 cut(s) 405, 497, 672
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 332, 376, 606, 646
NcoI CCATGG 1 cut(s) 487
NdeII GATC 6 cut(s) 21, 92, 463, 628, 658, 683
NlaIII CATG 6 cut(s) 236, 316, 365, 491, 665, 720
NlaIV GGNNCC 2 cut(s) 23, 88
NspI RCATGY 1 cut(s) 316
PagI TCATGA 2 cut(s) 232, 361
PceI AGGCCT 1 cut(s) 267
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 5 cut(s) 285, 372, 375, 378, 540
PspFI CCCAGC 2 cut(s) 25, 322
PspN4I GGNNCC 2 cut(s) 23, 88
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 21, 92
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 3 cut(s) 226, 436, 624
RsaNI GTAC 3 cut(s) 225, 435, 623
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 3 cut(s) 405, 497, 672
SatI GCNGC 5 cut(s) 284, 371, 374, 377, 539
Sau3AI GATC 6 cut(s) 21, 92, 463, 628, 658, 683
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 2 cut(s) 226, 436
SetI ASST 8 cut(s) 112, 129, 285, 328, 385, 513, 700, 706
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 127
SmiI ATTTAAAT 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 360
SpeI ACTAGT 2 cut(s) 218, 227
Sse9I AATT 6 cut(s) 11, 250, 402, 467, 652, 673
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 211
SspMI CTAG 5 cut(s) 219, 228, 626, 693, 736
StuI AGGCCT 1 cut(s) 267
StyI CCWWGG 2 cut(s) 487, 511
SwaI ATTTAAAT 1 cut(s) 498
TaaI ACNGT 2 cut(s) 434, 568
TaiI ACGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 64, 72, 680
TasI AATT 6 cut(s) 11, 250, 402, 467, 652, 673
TatI WGTACW 2 cut(s) 224, 434
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 405, 497, 672
Tru9I TTAA 3 cut(s) 405, 497, 672
TscAI CASTG 2 cut(s) 22, 337
TseI GCWGC 5 cut(s) 283, 370, 373, 376, 538
TspDTI ATGAA 4 cut(s) 156, 254, 666, 705
TspRI CASTG 2 cut(s) 22, 337
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 11, 652
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 5 cut(s) 219, 228, 626, 693, 736
ZrmI AGTACT 2 cut(s) 226, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.