RLG00000000760

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011007
Physical Location & Seq
Forward (+)
5050894 .. 5052629
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000760

Sequence Viewer

Length: 1119 bp
ATGGATTCTGGTAATAGTGGAAGCATGTCTTCAAGTGGTGGTGATGATCAAGACCTTGATATTGTTTCACAGCCTGAATCCGTTTCCGGGTTTCTGAATTCGTCTCATCCCACTATGCAATTTGGTGGTTCCTCCGACAACAACCCGAATCTGTTTTCCCAATACCAGAACCACCACCACCACCAACCCAGTACACTTTTTGATCTTTCATCCAATTATCTCCAGGCATTGTCTCAATCTCAGTCACCAAACTCTTCAAATCCCAATTTCCTGCTCAATCAAAGATCCGATCATGAACCAAACTCCACCACCAATACTGGATCCGATCATCAACAAGCCAACTACACCAACTCGATTGCAAACCTACCAGGCTCATCATCATCAGCTCATCAAGCTCCACCGATATCGGGTACACCACGGGGTAGCTATTCGTCTGCCAAGCCCAATAATTTGGTTCGAAACTCGAAGAAGAGGACGAGAGCTTCTAGGAGGGCGCCGACGACCGTTCTGACCACCGACACCTCTAATTTCAGAGCAATGGTGCAGGAATTCACTGGGATCCCAGCACCGCCGTTCTCTGCAGGCTCGTCATCCTACTCTCGAAGGCTTGATAGTATATTTGGCTCCGGATCTGTCTACCCTTTACGTCCTTCGGCTCAAAAGCTGCCTCATCATCATAATATGATGGTAAACATGCAAAACCCAGCTCTCAGTGCATTCCAGTCATCCCTTCCCCATCATCATGAGCAGCAGCAGCAGCCACCTCCATTCCTCTCTTCCTCAATTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCCTTACATCCTCTTGAAGATCAATTGGGTATGACTATGAGCCATGGATATTTAAATAACACAAACCTTGGTGCTTCAGATGGGTCAACAATGCTGCCATTGAGGAGTGATGATAATCATACTGTTAGATGGAGAGATTATGGACTTGGATTGGGCGCCGTCAGCGATGGGAGAGGGGTACTAGATCAAAACCAGCATTTGAGGCCTAATTTGGATCATGGAATAGTTAATTCATCGAGATCAAACACTAGAGGTGAAGCTTCGGTTGATTCATGGATTTGCCCGTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

373

Amino Acids

40.27

Weight (kDa)

6.54

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 164 - 191 2.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 493, 980
AccI GTMKAC 1 cut(s) 636
AccIII TCCGGA 1 cut(s) 626
AciI CCGC 1 cut(s) 569
AclWI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1047
AcsI RAATTY 2 cut(s) 97, 548
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 2 cut(s) 494, 981
AfaI GTAC 4 cut(s) 193, 412, 817, 1005
AfiI CCNNNNNNNGG 2 cut(s) 87, 407
AgsI TTSAA 3 cut(s) 33, 258, 842
AjnI CCWGG 2 cut(s) 222, 367
AluBI AGCT 7 cut(s) 386, 395, 426, 482, 664, 707, 1085
AluI AGCT 7 cut(s) 386, 395, 426, 482, 664, 707, 1085
Alw26I GTCTC 2 cut(s) 108, 237
AlwI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1047
Aor13HI TCCGGA 1 cut(s) 626
AoxI GGCC 1 cut(s) 1028
ApeKI GCWGC 6 cut(s) 664, 748, 751, 754, 757, 919
ApoI RAATTY 2 cut(s) 97, 548
AspLEI GCGC 2 cut(s) 496, 983
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 53, 237, 1091
AsuII TTCGAA 1 cut(s) 457
BamHI GGATCC 2 cut(s) 320, 558
BanI GGYRCC 2 cut(s) 493, 980
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 6 cut(s) 651, 760, 763, 766, 769, 906
BccI CCATC 5 cut(s) 679, 744, 899, 948, 986
BceAI ACGGC 2 cut(s) 556, 968
BciT130I CCWGG 2 cut(s) 224, 369
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 108, 237
BfaI CTAG 4 cut(s) 486, 1007, 1074, 1117
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 2 cut(s) 497, 984
BisI GCNGC 6 cut(s) 665, 749, 752, 755, 758, 920
BlsI GCNGC 6 cut(s) 666, 750, 753, 756, 759, 921
BmcAI AGTACT 1 cut(s) 817
Bme1390I CCNGG 3 cut(s) 88, 224, 369
BmiI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 982
BmrFI CCNGG 3 cut(s) 88, 224, 369
BmrI ACTGGG 2 cut(s) 183, 564
BmuI ACTGGG 2 cut(s) 183, 564
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 939
BsaHI GRCGYC 2 cut(s) 494, 981
BsaJI CCNNGG 3 cut(s) 416, 868, 892
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 407
Bse1I ACTGG 4 cut(s) 189, 322, 559, 721
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 626
BseBI CCWGG 2 cut(s) 224, 369
BseDI CCNNGG 3 cut(s) 416, 868, 892
BseGI GGATG 5 cut(s) 106, 209, 590, 725, 832
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 2 cut(s) 87, 407
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 254, 724
BseNI ACTGG 4 cut(s) 189, 322, 559, 721
BseRI GAGGAG 1 cut(s) 943
BseXI GCAGC 6 cut(s) 651, 760, 763, 766, 769, 906
BseYI CCCAGC 2 cut(s) 562, 703
BsgI GTGCAG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 1 cut(s) 1030
BshNI GGYRCC 2 cut(s) 493, 980
BsiEI CGRYCG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 87, 627
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 87, 407
BsmAI GTCTC 2 cut(s) 108, 237
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 1 cut(s) 1030
Bsp119I TTCGAA 1 cut(s) 457
Bsp13I TCCGGA 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 868
BspACI CCGC 1 cut(s) 569
BspANI GGCC 1 cut(s) 1030
BspCNI CTCAG 2 cut(s) 253, 723
BspEI TCCGGA 1 cut(s) 626
BspHI TCATGA 2 cut(s) 292, 742
BspLI GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 982
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 7 cut(s) 279, 315, 328, 553, 566, 637, 1047
BspT104I TTCGAA 1 cut(s) 457
BspT107I GGYRCC 2 cut(s) 493, 980
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 4 cut(s) 189, 322, 559, 721
BssECI CCNNGG 3 cut(s) 416, 868, 892
BssNI GRCGYC 2 cut(s) 494, 981
BssT1I CCWWGG 2 cut(s) 868, 892
Bst2UI CCWGG 2 cut(s) 224, 369
Bst4CI ACNGT 3 cut(s) 505, 815, 949
Bst6I CTCTTC 3 cut(s) 259, 464, 781
BstACI GRCGYC 2 cut(s) 494, 981
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 2 cut(s) 240, 710
BstDSI CCRYGG 2 cut(s) 416, 868
BstF5I GGATG 5 cut(s) 106, 209, 590, 725, 832
BstH2I RGCGCY 2 cut(s) 497, 984
BstHHI GCGC 2 cut(s) 496, 983
BstMAI GTCTC 2 cut(s) 108, 237
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 6 cut(s) 392, 713, 754, 757, 987, 1027
BstNI CCWGG 2 cut(s) 224, 369
BstNSI RCATGY 2 cut(s) 28, 697
BstSCI CCNGG 3 cut(s) 86, 222, 367
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 6 cut(s) 651, 760, 763, 766, 769, 906
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 4 cut(s) 284, 320, 558, 629
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 4 cut(s) 284, 320, 558, 629
BsuRI GGCC 1 cut(s) 1030
BtgI CCRYGG 2 cut(s) 416, 868
BtgZI GCGATG 1 cut(s) 1005
BtsCI GGATG 5 cut(s) 106, 209, 590, 725, 832
BtsIMutI CAGTG 2 cut(s) 552, 718
Cac8I GCNNGC 1 cut(s) 583
CciI TCATGA 2 cut(s) 292, 742
CfoI GCGC 2 cut(s) 496, 983
Csp6I GTAC 4 cut(s) 192, 411, 816, 1004
CviAII CATG 7 cut(s) 25, 293, 694, 743, 869, 1043, 1098
CviQI GTAC 4 cut(s) 192, 411, 816, 1004
DdeI CTNAG 2 cut(s) 240, 710
DinI GGCGCC 2 cut(s) 495, 982
DraI TTTAAA 1 cut(s) 879
Eam1104I CTCTTC 3 cut(s) 259, 464, 781
EarI CTCTTC 3 cut(s) 259, 464, 781
Eco130I CCWWGG 2 cut(s) 868, 892
Eco147I AGGCCT 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 885
EcoRI GAATTC 2 cut(s) 97, 548
EcoRII CCWGG 2 cut(s) 222, 367
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 868, 892
EgeI GGCGCC 2 cut(s) 495, 982
EheI GGCGCC 2 cut(s) 495, 982
ErhI CCWWGG 2 cut(s) 868, 892
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 7 cut(s) 28, 296, 697, 746, 872, 1046, 1101
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 824
FatI CATG 7 cut(s) 24, 292, 693, 742, 868, 1042, 1097
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 665, 749, 752, 755, 758, 920
FokI GGATG 5 cut(s) 93, 196, 577, 712, 819
Fsp4HI GCNGC 6 cut(s) 665, 749, 752, 755, 758, 920
FspBI CTAG 4 cut(s) 486, 1007, 1074, 1117
GlaI GCGC 2 cut(s) 495, 982
GluI GCNGC 6 cut(s) 665, 749, 752, 755, 758, 920
GsaI CCCAGC 2 cut(s) 566, 707
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 497, 984
HaeIII GGCC 1 cut(s) 1030
HapII CCGG 2 cut(s) 87, 627
HhaI GCGC 2 cut(s) 496, 983
Hin1I GRCGYC 2 cut(s) 494, 981
Hin1II CATG 7 cut(s) 28, 296, 697, 746, 872, 1046, 1101
Hin6I GCGC 2 cut(s) 494, 981
HinP1I GCGC 2 cut(s) 494, 981
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 4 cut(s) 5, 77, 148, 1094
HpaII CCGG 2 cut(s) 87, 627
HphI GGTGA 3 cut(s) 53, 237, 1091
Hpy166II GTNNAC 5 cut(s) 194, 413, 637, 691, 912
Hpy188I TCNGA 8 cut(s) 96, 136, 289, 325, 510, 533, 904, 1114
Hpy188III TCNNGA 7 cut(s) 50, 293, 600, 627, 743, 839, 1062
Hpy8I GTNNAC 5 cut(s) 194, 413, 637, 691, 912
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 3 cut(s) 597, 660, 740
HpyCH4III ACNGT 3 cut(s) 505, 815, 949
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 6 cut(s) 118, 359, 544, 581, 697, 716
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 713, 754, 757, 987, 1027
HpyF3I CTNAG 2 cut(s) 240, 710
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 2 cut(s) 494, 981
Hsp92II CATG 7 cut(s) 28, 296, 697, 746, 872, 1046, 1101
HspAI GCGC 2 cut(s) 494, 981
KasI GGCGCC 2 cut(s) 493, 980
Kpn2I TCCGGA 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 46
LmnI GCTCC 2 cut(s) 400, 629
Lsp1109I GCAGC 6 cut(s) 651, 760, 763, 766, 769, 906
MaeI CTAG 4 cut(s) 486, 1007, 1074, 1117
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 243
MboII GAAGA 6 cut(s) 21, 246, 478, 481, 768, 854
MfeI CAATTG 1 cut(s) 848
MflI RGATCY 4 cut(s) 284, 320, 558, 629
Mly113I GGCGCC 2 cut(s) 494, 981
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 626
MseI TTAA 3 cut(s) 786, 878, 1053
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 2 cut(s) 87, 627
MspR9I CCNGG 3 cut(s) 88, 224, 369
MunI CAATTG 1 cut(s) 848
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 224, 369
MwoI GCNNNNNNNGC 6 cut(s) 392, 713, 754, 757, 987, 1027
NarI GGCGCC 2 cut(s) 494, 981
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 868
NlaIII CATG 7 cut(s) 28, 296, 697, 746, 872, 1046, 1101
NlaIV GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 982
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 28, 697
NspV TTCGAA 1 cut(s) 457
PagI TCATGA 2 cut(s) 292, 742
PceI AGGCCT 1 cut(s) 1030
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 4 cut(s) 5, 77, 148, 1094
PkrI GCNGC 6 cut(s) 666, 750, 753, 756, 759, 921
PluTI GGCGCC 2 cut(s) 497, 984
Psp6I CCWGG 2 cut(s) 222, 367
PspFI CCCAGC 2 cut(s) 562, 703
PspGI CCWGG 2 cut(s) 222, 367
PspN4I GGNNCC 6 cut(s) 130, 322, 495, 560, 625, 982
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 4 cut(s) 284, 320, 558, 629
RsaI GTAC 4 cut(s) 193, 412, 817, 1005
RsaNI GTAC 4 cut(s) 192, 411, 816, 1004
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 3 cut(s) 786, 878, 1053
SatI GCNGC 6 cut(s) 665, 749, 752, 755, 758, 920
ScaI AGTACT 1 cut(s) 817
ScrFI CCNGG 3 cut(s) 88, 224, 369
SfcI CTRYAG 1 cut(s) 579
SfoI GGCGCC 2 cut(s) 495, 982
SfuI TTCGAA 1 cut(s) 457
SmiI ATTTAAAT 1 cut(s) 879
SmiMI CAYNNNNRTG 1 cut(s) 741
SseBI AGGCCT 1 cut(s) 1030
SsiI CCGC 1 cut(s) 569
SspDI GGCGCC 2 cut(s) 493, 980
SspMI CTAG 4 cut(s) 486, 1007, 1074, 1117
StuI AGGCCT 1 cut(s) 1030
StyD4I CCNGG 3 cut(s) 86, 222, 367
StyI CCWWGG 2 cut(s) 868, 892
SwaI ATTTAAAT 1 cut(s) 879
TaaI ACNGT 3 cut(s) 505, 815, 949
TaiI ACGT 1 cut(s) 649
TaqI TCGA 5 cut(s) 353, 457, 464, 601, 1061
TatI WGTACW 2 cut(s) 191, 815
TfiI GAWTC 4 cut(s) 5, 77, 148, 1094
Tru1I TTAA 3 cut(s) 786, 878, 1053
Tru9I TTAA 3 cut(s) 786, 878, 1053
TscAI CASTG 2 cut(s) 559, 718
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 6 cut(s) 664, 748, 751, 754, 757, 919
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 198, 309, 1047, 1086
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 559, 718
XapI RAATTY 2 cut(s) 97, 548
XceI RCATGY 2 cut(s) 28, 697
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 4 cut(s) 486, 1007, 1074, 1117
ZrmI AGTACT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.