Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Forward (+)

16263805 .. 16264945

Gene Structure 1141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGTCTATGCTGACTAATGTTGTCTCTGGTGAGACCGAACCCTCGGCATCTGCGACATGGACGATGGGTCATAAGAGAGAAAGAGAAGAGTTTTCTTTGCCTCCTCAACCATTGATTACCGGTTCAGCTGTGACTAAAGAATGTGAAAGCTCAATGTCCTTGGAGAGGCCAAAAAAATATAGAGGAGTAAGGCAACGACCATGGGGAAAATGGGCGGCGGAGATTCGAGACCCACACAAGGCGACACGTGTATGGCTTGGGACATTCGAGACAGCCGAGGCCGCCGCAAGAGCCTATGATGCGGCAGCACTTCGCTTTAGAGGAAGCAAAGCAAAGCTTAATTTCCCCGAAAATGTTGGAACTCAGACGATTCAACGAAATTCTCATTTCTTGCAAAACTCTATGCAACCTTCTCTGACATACATCGATCAATGTCCAACTCTATTATCTTACTCTCGATGTATGGAGCAACAACAACCATTAGTAGGCATGTTGCAGCCAACAGAAGAGGAAAATCACTTTTTCGAAAAACCATGGACCGAATATGATCAATACAATTACTCCTCTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

192

Amino Acids

21.96

Weight (kDa)

6.91

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	60 - 109	1.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	218, 221, 285, 288, 305
AcsI	RAATTY	1 cut(s)	382
AcvI	CACGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	168, 241, 488
AflIII	ACRYGT	2 cut(s)	248, 250
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	377
AhdI	GACNNNNNGTC	1 cut(s)	69
AluBI	AGCT	3 cut(s)	131, 153, 340
AluI	AGCT	3 cut(s)	131, 153, 340
Alw26I	GTCTC	4 cut(s)	29, 31, 225, 266
AoxI	GGCC	2 cut(s)	170, 282
ApeKI	GCWGC	2 cut(s)	308, 499
ApoI	RAATTY	1 cut(s)	382
AsiGI	ACCGGT	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	540
BbrPI	CACGTG	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	320, 511
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	4 cut(s)	29, 31, 225, 266
BisI	GCNGC	6 cut(s)	219, 285, 288, 306, 309, 500
BlsI	GCNGC	6 cut(s)	220, 286, 289, 307, 310, 501
Bme18I	GGWCC	1 cut(s)	540
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	540
BmsI	GCATC	2 cut(s)	59, 292
Bpu14I	TTCGAA	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	251
BsaI	GGTCTC	2 cut(s)	29, 225
BsaJI	CCNNGG	5 cut(s)	45, 162, 203, 279, 536
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 241, 488
Bse118I	RCCGGY	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	5 cut(s)	45, 162, 203, 279, 536
BseLI	CCNNNNNNNGG	3 cut(s)	168, 241, 488
BseMII	CTCAG	1 cut(s)	380
BseRI	GAGGAG	3 cut(s)	96, 201, 556
BseXI	GCAGC	2 cut(s)	320, 511
BshFI	GGCC	2 cut(s)	172, 284
BshTI	ACCGGT	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	3 cut(s)	168, 241, 488
BsmAI	GTCTC	4 cut(s)	29, 31, 225, 266
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	172, 284
Bso31I	GGTCTC	2 cut(s)	29, 225
Bsp119I	TTCGAA	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	430, 550
Bsp19I	CCATGG	2 cut(s)	203, 536
BspACI	CCGC	5 cut(s)	218, 221, 285, 288, 305
BspANI	GGCC	2 cut(s)	172, 284
BspCNI	CTCAG	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	429
BspT104I	TTCGAA	1 cut(s)	528
BspTNI	GGTCTC	2 cut(s)	29, 225
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	45, 162, 203, 279, 536
BssMI	GATC	2 cut(s)	430, 550
BssT1I	CCWWGG	3 cut(s)	162, 203, 536
Bst6I	CTCTTC	2 cut(s)	84, 504
BstBAI	YACGTR	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	528
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	2 cut(s)	203, 536
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	433, 553
BstMAI	GTCTC	4 cut(s)	29, 31, 225, 266
BstMBI	GATC	2 cut(s)	430, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
BstNSI	RCATGY	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	320, 511
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	172, 284
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	203, 536
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	540
ClaI	ATCGAT	1 cut(s)	429
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	60, 204, 493, 537
CviJI	RGCY	9 cut(s)	131, 153, 172, 259, 278, 284, 296, 340, 502
CviKI_1	RGCY	9 cut(s)	131, 153, 172, 259, 278, 284, 296, 340, 502
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	432, 552
DpnII	GATC	2 cut(s)	430, 550
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	84, 504
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	2 cut(s)	84, 504
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	162, 203, 536
Eco31I	GGTCTC	2 cut(s)	29, 225
Eco47I	GGWCC	1 cut(s)	540
Eco72I	CACGTG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	166
EcoT14I	CCWWGG	3 cut(s)	162, 203, 536
ErhI	CCWWGG	3 cut(s)	162, 203, 536
FaeI	CATG	4 cut(s)	63, 207, 496, 540
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	4 cut(s)	59, 203, 492, 536
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	219, 285, 288, 306, 309, 500
Fsp4HI	GCNGC	6 cut(s)	219, 285, 288, 306, 309, 500
GluI	GCNGC	6 cut(s)	219, 285, 288, 306, 309, 500
HaeIII	GGCC	2 cut(s)	172, 284
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	4 cut(s)	63, 207, 496, 540
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	226, 373
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	369, 420
Hpy188III	TCNNGA	3 cut(s)	230, 271, 459
HpyAV	CCTTC	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	397, 409, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	4 cut(s)	63, 207, 496, 540
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	430, 550
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	2 cut(s)	15, 136
Lsp1109I	GCAGC	2 cut(s)	320, 511
LweI	GCATC	2 cut(s)	59, 292
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	432, 552
MboI	GATC	2 cut(s)	430, 550
MboII	GAAGA	2 cut(s)	101, 521
MluCI	AATT	3 cut(s)	343, 382, 559
MmeI	TCCRAC	2 cut(s)	340, 464
MnlI	CCTC	9 cut(s)	55, 114, 117, 162, 179, 274, 317, 505, 577
MseI	TTAA	2 cut(s)	342, 577
MslI	CAYNNNNRTG	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
NcoI	CCATGG	2 cut(s)	203, 536
NdeII	GATC	2 cut(s)	430, 550
NlaIII	CATG	4 cut(s)	63, 207, 496, 540
NmeAIII	GCCGAG	2 cut(s)	26, 304
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 276
PfeI	GAWTC	2 cut(s)	226, 373
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	220, 286, 289, 307, 310, 501
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	342, 577
SatI	GCNGC	6 cut(s)	219, 285, 288, 306, 309, 500
Sau3AI	GATC	2 cut(s)	430, 550
Sau96I	GGNCC	1 cut(s)	540
SetI	ASST	5 cut(s)	133, 155, 253, 342, 415
SfaNI	GCATC	2 cut(s)	59, 292
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	343, 382, 559
SsiI	CCGC	5 cut(s)	218, 221, 285, 288, 305
StyI	CCWWGG	3 cut(s)	162, 203, 536
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	5 cut(s)	229, 270, 429, 460, 528
TaqII	GACCGA	2 cut(s)	53, 557
TasI	AATT	3 cut(s)	343, 382, 559
TauI	GCSGC	4 cut(s)	221, 287, 290, 308
TfiI	GAWTC	2 cut(s)	226, 373
Tru1I	TTAA	2 cut(s)	342, 577
Tru9I	TTAA	2 cut(s)	342, 577
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	308, 499
Tsp45I	GTSAC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	540
XagI	CCTNNNNNAGG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.