Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Forward (+)

59492107 .. 59514493

Gene Structure 22387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCTGCCATGGTCTCAGCTCTATCACAAGTTATTAGTGGAAACAGTAGTACTGATACTAACCAAAACCCTGTACTTCAACTTCCCCAACAGTCCGGCGCTGCCGTATTGGAACATGATCAATCCCATCAACAAGCGCCAGATCAAGGGAGTGTGAGGAGGAGACACTATAGAGGAGTGAGACAGAGACCATGGGGGAAGTGGGCGGCCGAGATTCGTGATCCAAAGAAGGCAGCCAGAGTGTGGCTTGGAACTTTTGAAACGGCGGAGGCTGCCGCACTTGCTTACGACGAAGCAGCTCTCAAATTCAAAGGAAGCAAGGCTAAGCTTAACTTCCCGGAAAGAGTTCAAGGGACGAGTGAATTAGGCGGTTACCTCACAACTAACACAGTTGCTCATCAGCCTCTCATTTCTGATTGTCATCATCAGCAACTGGTATACCCGAATAATATCCCTAATACTGGTCAATATTATCCACAATTTTATGGGAACTTAAATTATGGTCAGACAGATCAAAGATTTTATTACCAGCCTACTACGTCTTCATCTCCACCTTTTATACCAATATCTCAAGCACAAGAAGAAGATCAACAACAACAGCCGGCCTTAAGCTTTCCTATGCCGGCGTTTGGTTCATCTTCTTCCAGTTTGGATCCTGAATATCCACAGAACAATACTACAAGAAATTTTGACAATAGTCATTCGAGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

237

Amino Acids

26.36

Weight (kDa)

6.65

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 105	9.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	4 cut(s)	206, 266, 276, 369
AclWI	GGATC	3 cut(s)	215, 647, 660
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	305, 685
AfaI	GTAC	2 cut(s)	52, 75
AfiI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 629
AflII	CTTAAG	1 cut(s)	607
AgsI	TTSAA	4 cut(s)	80, 260, 310, 350
AluBI	AGCT	4 cut(s)	20, 299, 328, 612
AluI	AGCT	4 cut(s)	20, 299, 328, 612
Alw26I	GTCTC	4 cut(s)	19, 157, 175, 181
AlwI	GGATC	3 cut(s)	215, 647, 660
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	207, 603
ApeKI	GCWGC	4 cut(s)	101, 233, 272, 296
ApoI	RAATTY	2 cut(s)	305, 685
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	101, 139
AsuC2I	CCSGG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	652
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	88, 245, 259, 308
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	2 cut(s)	89, 279
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	4 cut(s)	19, 157, 175, 181
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	102, 140
BfrI	CTTAAG	1 cut(s)	607
BisI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	6 cut(s)	103, 208, 235, 274, 277, 298
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	2 cut(s)	19, 181
BsaJI	CCNNGG	2 cut(s)	9, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 629
Bse118I	RCCGGY	2 cut(s)	601, 622
Bse1I	ACTGG	3 cut(s)	438, 466, 645
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	9, 191
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 629
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	3 cut(s)	438, 466, 645
BseRI	GAGGAG	3 cut(s)	172, 175, 189
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	88, 245, 259, 308
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	209, 605
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	96, 338, 602, 623
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 629
BsmAI	GTCTC	4 cut(s)	19, 157, 175, 181
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	209, 605
Bso31I	GGTCTC	2 cut(s)	19, 181
Bsp143I	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	2 cut(s)	9, 191
BspACI	CCGC	4 cut(s)	206, 266, 276, 369
BspANI	GGCC	2 cut(s)	209, 605
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	3 cut(s)	215, 647, 660
BspTI	CTTAAG	1 cut(s)	607
BspTNI	GGTCTC	2 cut(s)	19, 181
BsrFI	RCCGGY	2 cut(s)	601, 622
BsrI	ACTGG	3 cut(s)	438, 466, 645
BssAI	RCCGGY	2 cut(s)	601, 622
BssECI	CCNNGG	2 cut(s)	9, 191
BssMI	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
BssNAI	GTATAC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	9, 191
Bst1107I	GTATAC	1 cut(s)	439
Bst4CI	ACNGT	3 cut(s)	47, 93, 391
BstAFI	CTTAAG	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	603, 624
BstDEI	CTNAG	2 cut(s)	16, 324
BstDSI	CCRYGG	2 cut(s)	9, 191
BstEII	GGTNACC	1 cut(s)	371
BstH2I	RGCGCY	2 cut(s)	102, 140
BstHHI	GCGC	2 cut(s)	101, 139
BstKTI	GATC	6 cut(s)	121, 145, 223, 514, 589, 655
BstMAI	GTCTC	4 cut(s)	19, 157, 175, 181
BstMBI	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstPAI	GACNNNNGTC	1 cut(s)	696
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	4 cut(s)	88, 245, 259, 308
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BstZ17I	GTATAC	1 cut(s)	439
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	209, 605
BtgI	CCRYGG	2 cut(s)	9, 191
Cac8I	GCNNGC	2 cut(s)	603, 624
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	101, 139
Cfr10I	RCCGGY	2 cut(s)	601, 622
Csp6I	GTAC	2 cut(s)	51, 74
CviAII	CATG	3 cut(s)	10, 116, 192
CviQI	GTAC	2 cut(s)	51, 74
DdeI	CTNAG	2 cut(s)	16, 324
DpnI	GATC	6 cut(s)	120, 144, 222, 513, 588, 654
DpnII	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	9, 191
Eco31I	GGTCTC	2 cut(s)	19, 181
Eco52I	CGGCCG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	9, 191
ErhI	CCWWGG	2 cut(s)	9, 191
FaeI	CATG	3 cut(s)	13, 119, 195
FaiI	YATR	9 cut(s)	11, 117, 171, 193, 439, 486, 501, 560, 620
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	9, 115, 191
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
Fsp4HI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
GlaI	GCGC	2 cut(s)	100, 138
GluI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
HaeII	RGCGCY	2 cut(s)	102, 140
HaeIII	GGCC	2 cut(s)	209, 605
HapII	CCGG	4 cut(s)	96, 338, 602, 623
HhaI	GCGC	2 cut(s)	101, 139
Hin1II	CATG	3 cut(s)	13, 119, 195
Hin6I	GCGC	2 cut(s)	99, 137
HinP1I	GCGC	2 cut(s)	99, 137
HindIII	AAGCTT	2 cut(s)	326, 610
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	4 cut(s)	96, 338, 602, 623
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	415, 507
Hpy188III	TCNNGA	3 cut(s)	218, 656, 705
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	47, 93, 391
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	2 cut(s)	16, 324
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	3 cut(s)	13, 119, 195
HspAI	GCGC	2 cut(s)	99, 137
KroI	GCCGGC	2 cut(s)	601, 622
KroNI	GCCGGC	2 cut(s)	603, 624
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
Lsp1109I	GCAGC	4 cut(s)	88, 245, 259, 308
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	6 cut(s)	120, 144, 222, 513, 588, 654
MboI	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
MboII	GAAGA	5 cut(s)	534, 593, 596, 630, 633
MflI	RGATCY	1 cut(s)	652
MluCI	AATT	5 cut(s)	305, 362, 479, 496, 685
MnlI	CCTC	7 cut(s)	150, 153, 167, 262, 386, 414, 701
MroNI	GCCGGC	2 cut(s)	601, 622
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	330, 494, 608
MspCI	CTTAAG	1 cut(s)	607
MspI	CCGG	4 cut(s)	96, 338, 602, 623
MspR9I	CCNGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NaeI	GCCGGC	2 cut(s)	603, 624
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	2 cut(s)	9, 191
NdeII	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
NgoMIV	GCCGGC	2 cut(s)	601, 622
NlaIII	CATG	3 cut(s)	13, 119, 195
NlaIV	GGNNCC	1 cut(s)	654
NmeAIII	GCCGAG	1 cut(s)	235
PdiI	GCCGGC	2 cut(s)	603, 624
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	243
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	103, 208, 235, 274, 277, 298
PshAI	GACNNNNGTC	1 cut(s)	696
PspEI	GGTNACC	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	654
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	2 cut(s)	52, 75
RsaNI	GTAC	2 cut(s)	51, 74
SaqAI	TTAA	3 cut(s)	330, 494, 608
SatI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
Sau3AI	GATC	6 cut(s)	118, 142, 220, 511, 586, 652
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	7 cut(s)	22, 301, 330, 378, 542, 556, 614
SfcI	CTRYAG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	570, 607
SmoI	CTYRAG	2 cut(s)	570, 607
Sse9I	AATT	5 cut(s)	305, 362, 479, 496, 685
SsiI	CCGC	4 cut(s)	206, 266, 276, 369
SspI	AATATT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	9, 191
TaaI	ACNGT	3 cut(s)	47, 93, 391
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	704
TasI	AATT	5 cut(s)	305, 362, 479, 496, 685
TatI	WGTACW	2 cut(s)	50, 73
TauI	GCSGC	2 cut(s)	209, 278
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	330, 494, 608
Tru9I	TTAA	3 cut(s)	330, 494, 608
TseI	GCWGC	4 cut(s)	101, 233, 272, 296
TspDTI	ATGAA	2 cut(s)	534, 624
Van91I	CCANNNNNTGG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	305, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.