Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

27426400 .. 27428144

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1130400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATCTTCGATCCGTTTTGCTCATCTGCTCGATCTCAACATGAGATGTCTGCCATGGTCTCAGCTCTAGCTCAAGTTCTTGGAAGCAATAACAGCCAGACCCCGGCTGTTCAAGAGCCGGTGGAGCCGCCACTGATCACGCCCCAGTCCAGCGCCATGGAATTGCATGATGGTCAATCTCCTCAACAGGCTCAAGATCAAGGGAATGTGAGGAGAAGGCACTATAGAGGAGTGAGGCAGCGACCATGGGGAAAGTGGGCAGCTGAGATTCGTGACCCCAAGAAGGCAGCTCGAGTGTGGCTCGGCACCTTTGAAACCGCAGAGGCCGCAGCGATTTCTTATGATGAAGCAGCTCTCAGGTTTAAAGGAAGCAAAGCTAAGCTCAACTTTCCCGAAAGAGTTCAGGGAAGAATTACTGAATTAGGTTACCTCACTACAACTAGTACTCAACAAAACTTGCCAGCTGAGGCTCAAAGTATTACGGACCACCACCAGCCTCTTCCTGATCATCAATATCAACTGCAGGCATTCCCTAATAATGTTGCTACTCCTCATGATCAATATGCACCATATTTTCTGAGTGGTAACGAGGGTGTAAATTATGATGATTTACCAACTAATCTTAGTGAAAGAGAAAGATTTGCTTTCCAGACTTCAGAAACTACTTCATCATCTTTGTTACCTTTCTTACCATCTCATCAACAAGAAGATCAACAACATCCCTTAAACTATTCTATGCCGGCATTCGGTTCTTCTTCTTCTTCGAGTTCAAATCCTCCCCCTAGGAATAGGAACCGTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

269

Amino Acids

29.96

Weight (kDa)

6.31

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	74 - 123	6.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	3 cut(s)	128, 318, 327
AclWI	GGATC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	103, 283, 746
AgsI	TTSAA	3 cut(s)	113, 314, 771
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	8 cut(s)	65, 71, 263, 290, 353, 377, 382, 464
AluI	AGCT	8 cut(s)	65, 71, 263, 290, 353, 377, 382, 464
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	5 cut(s)	238, 260, 287, 329, 350
Asp700I	GAANNNNTTC	1 cut(s)	399
AspA2I	CCTAGG	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	250, 272, 299, 341, 362
BccI	CCATC	2 cut(s)	164, 700
BclI	TGATCA	3 cut(s)	135, 505, 556
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	68, 441, 783
BfmI	CTRYAG	2 cut(s)	223, 521
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	7 cut(s)	128, 239, 261, 288, 327, 330, 351
BlnI	CCTAGG	1 cut(s)	782
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	7 cut(s)	129, 240, 262, 289, 328, 331, 352
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	126, 307, 794
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	57, 177
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	5 cut(s)	54, 102, 156, 245, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 283, 746
Bse118I	RCCGGY	2 cut(s)	118, 739
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	54, 102, 156, 245, 782
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	3 cut(s)	103, 283, 746
BseMII	CTCAG	5 cut(s)	75, 255, 370, 456, 569
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	4 cut(s)	171, 226, 243, 540
BseXI	GCAGC	5 cut(s)	250, 272, 299, 341, 362
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	104, 119, 740
BslI	CCNNNNNNNGG	3 cut(s)	103, 283, 746
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	527, 743
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	291
Bsp143I	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	3 cut(s)	54, 156, 245
BspACI	CCGC	3 cut(s)	128, 318, 327
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	5 cut(s)	74, 256, 369, 457, 570
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	126, 307, 794
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	118, 739
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	2 cut(s)	118, 739
BssECI	CCNNGG	5 cut(s)	54, 102, 156, 245, 782
BssMI	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
BssT1I	CCWWGG	4 cut(s)	54, 156, 245, 782
Bst4CI	ACNGT	1 cut(s)	797
Bst6I	CTCTTC	1 cut(s)	504
BstC8I	GCNNGC	3 cut(s)	462, 525, 741
BstDEI	CTNAG	7 cut(s)	61, 264, 356, 378, 465, 578, 623
BstDSI	CCRYGG	3 cut(s)	54, 156, 245
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	8 cut(s)	6, 13, 35, 138, 199, 508, 559, 712
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 124, 326
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	223, 521
BstV1I	GCAGC	5 cut(s)	250, 272, 299, 341, 362
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	3 cut(s)	54, 156, 245
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	462, 525, 741
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	118, 739
Cfr13I	GGNCC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	6 cut(s)	41, 55, 157, 167, 246, 554
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	7 cut(s)	61, 264, 356, 378, 465, 578, 623
DpnI	GATC	8 cut(s)	5, 12, 34, 137, 198, 507, 558, 711
DpnII	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
DraI	TTTAAA	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	4 cut(s)	54, 156, 245, 782
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	4 cut(s)	54, 156, 245, 782
ErhI	CCWWGG	4 cut(s)	54, 156, 245, 782
FaeI	CATG	6 cut(s)	44, 58, 160, 170, 249, 557
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 628, 660
FatI	CATG	6 cut(s)	40, 54, 156, 166, 245, 553
FbaI	TGATCA	3 cut(s)	135, 505, 556
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	7 cut(s)	128, 239, 261, 288, 327, 330, 351
FokI	GGATG	1 cut(s)	705
Fsp4HI	GCNGC	7 cut(s)	128, 239, 261, 288, 327, 330, 351
FspBI	CTAG	3 cut(s)	68, 441, 783
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	7 cut(s)	128, 239, 261, 288, 327, 330, 351
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	3 cut(s)	104, 119, 740
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	6 cut(s)	44, 58, 160, 170, 249, 557
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	800
HindII	GTYRAC	1 cut(s)	800
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	104, 119, 740
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	2 cut(s)	579, 658
Hpy188III	TCNNGA	7 cut(s)	113, 194, 272, 392, 503, 554, 649
Hpy8I	GTNNAC	1 cut(s)	800
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	2 cut(s)	210, 277
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4V	TGCA	3 cut(s)	166, 523, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 124, 326
HpyF3I	CTNAG	7 cut(s)	61, 264, 356, 378, 465, 578, 623
Hsp92II	CATG	6 cut(s)	44, 58, 160, 170, 249, 557
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Ksp22I	TGATCA	3 cut(s)	135, 505, 556
Kzo9I	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	5 cut(s)	250, 272, 299, 341, 362
MaeI	CTAG	3 cut(s)	68, 441, 783
MaeIII	GTNAC	4 cut(s)	272, 425, 584, 678
MalI	GATC	8 cut(s)	5, 12, 34, 137, 198, 507, 558, 711
MboI	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
MboII	GAAGA	7 cut(s)	420, 491, 719, 744, 747, 750, 753
MluCI	AATT	4 cut(s)	161, 411, 419, 598
MroNI	GCCGGC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	363, 725
MspA1I	CMGCKG	2 cut(s)	263, 464
MspI	CCGG	3 cut(s)	104, 119, 740
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	2 cut(s)	527, 743
MwoI	GCNNNNNNNGC	3 cut(s)	93, 124, 326
NaeI	GCCGGC	1 cut(s)	741
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	3 cut(s)	54, 156, 245
NdeII	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	6 cut(s)	44, 58, 160, 170, 249, 557
NlaIV	GGNNCC	3 cut(s)	126, 307, 794
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	553
PctI	GAATGC	2 cut(s)	527, 743
PdiI	GCCGGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	7 cut(s)	129, 240, 262, 289, 328, 331, 352
PspEI	GGTNACC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	126, 307, 794
PspPI	GGNCC	1 cut(s)	484
PspXI	VCTCGAGB	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	525
PvuII	CAGCTG	2 cut(s)	263, 464
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	363, 725
SatI	GCNGC	7 cut(s)	128, 239, 261, 288, 327, 330, 351
Sau3AI	GATC	8 cut(s)	3, 10, 32, 135, 196, 505, 556, 709
Sau96I	GGNCC	1 cut(s)	484
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	223, 521
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	72, 192, 291
SmoI	CTYRAG	3 cut(s)	72, 192, 291
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	4 cut(s)	161, 411, 419, 598
SsiI	CCGC	3 cut(s)	128, 318, 327
SspMI	CTAG	3 cut(s)	68, 441, 783
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	4 cut(s)	54, 156, 245, 782
TaaI	ACNGT	1 cut(s)	797
TaqI	TCGA	5 cut(s)	9, 31, 292, 764, 799
TasI	AATT	4 cut(s)	161, 411, 419, 598
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	2 cut(s)	130, 329
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	363, 725
Tru9I	TTAA	2 cut(s)	363, 725
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	238, 260, 287, 329, 350
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	360, 657
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	3 cut(s)	68, 441, 783
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.