Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

7539060 .. 7541056

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCTGCCATGGTCTCAGCTCTATCACAAGTTATTAGTGGAAACAGTAGTACTGATACTAACCAAAACCCTGCACTTCAACTTCCCCAACAGTCCGGCGCTGCCGTATTGGAACATGATCAATCCCATCAACAAGCGCCAGATCAAGGGAGTGTGAGGAGGAGACACTATAGAGGAGTGAGGCAGAGACCATGGGGCAAGTGGGCGGCCGAGATTCGTGATCCAAAGAAGGCAGCCCGAGTGTGGCTTGGAACTTTTGAAACGGCGGAGGCTGCTGCACTTGCTTACGACGAAGCAGCTCTCAAATTCAAAGGAAGCAAGGCTAAGCTTAACTTCCCGGAAAGAGTGCAAGGGACGAGTGAATTAGGCGGTTACCTCACAACTAACACAGTTGCTCATCAGCCTCTCATTTCTGATTATCATCATCAGCAACTGGTATACCCGAATAATATCCCTAATACTGGTCAATATTATCCACAATTTTATGGGAACTTAAACTATGGTCAGACAGATCAAAGATTTTATTACCAGCCTACTACGTCTTCATCTCCACCTTTTATACCAATATCTCAAGCACAAGAAGAAGATCAACAACAACAGCAGGCGCCCTTAAGCTTTCCTATGCCGGCGTTTGGTTCATCTTCTTCCAGTTTGGATCCTGAATATCCACAGAACAATACTACAAGAAATTTTGACAATAGTCATTCGAGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

238

Amino Acids

26.52

Weight (kDa)

6.65

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 105	9.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	3 cut(s)	206, 266, 369
AclWI	GGATC	3 cut(s)	215, 650, 663
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	305, 688
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 632
AflII	CTTAAG	1 cut(s)	610
AgsI	TTSAA	3 cut(s)	80, 260, 310
AluBI	AGCT	4 cut(s)	20, 299, 328, 615
AluI	AGCT	4 cut(s)	20, 299, 328, 615
Alw26I	GTCTC	3 cut(s)	19, 157, 181
AlwI	GGATC	3 cut(s)	215, 650, 663
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	5 cut(s)	101, 233, 272, 275, 296
ApoI	RAATTY	2 cut(s)	305, 688
AspLEI	GCGC	3 cut(s)	101, 139, 607
AsuC2I	CCSGG	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	88, 245, 259, 262, 308
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	2 cut(s)	89, 279
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	19, 157, 181
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	3 cut(s)	102, 140, 608
BfrI	CTTAAG	1 cut(s)	610
BisI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	6 cut(s)	103, 208, 235, 274, 277, 298
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	606, 657
BmrFI	CCNGG	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	605
BsaI	GGTCTC	2 cut(s)	19, 181
BsaJI	CCNNGG	2 cut(s)	9, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 632
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	3 cut(s)	438, 466, 648
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	9, 191
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 632
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	3 cut(s)	438, 466, 648
BseRI	GAGGAG	3 cut(s)	172, 175, 189
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	5 cut(s)	88, 245, 259, 262, 308
BsgI	GTGCAG	2 cut(s)	57, 261
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	96, 338, 626
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	146, 243, 461, 632
BsmAI	GTCTC	3 cut(s)	19, 157, 181
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	2 cut(s)	19, 181
BsoBI	CYCGRG	1 cut(s)	237
Bsp143I	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	2 cut(s)	9, 191
BspACI	CCGC	3 cut(s)	206, 266, 369
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	606, 657
BspPI	GGATC	3 cut(s)	215, 650, 663
BspT107I	GGYRCC	1 cut(s)	604
BspTI	CTTAAG	1 cut(s)	610
BspTNI	GGTCTC	2 cut(s)	19, 181
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	3 cut(s)	438, 466, 648
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	2 cut(s)	9, 191
BssMI	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
BssNAI	GTATAC	1 cut(s)	439
BssNI	GRCGYC	1 cut(s)	605
BssT1I	CCWWGG	2 cut(s)	9, 191
Bst1107I	GTATAC	1 cut(s)	439
Bst4CI	ACNGT	3 cut(s)	47, 93, 391
BstACI	GRCGYC	1 cut(s)	605
BstAFI	CTTAAG	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	603, 627
BstDEI	CTNAG	2 cut(s)	16, 324
BstDSI	CCRYGG	2 cut(s)	9, 191
BstEII	GGTNACC	1 cut(s)	371
BstH2I	RGCGCY	3 cut(s)	102, 140, 608
BstHHI	GCGC	3 cut(s)	101, 139, 607
BstKTI	GATC	6 cut(s)	121, 145, 223, 514, 589, 658
BstMAI	GTCTC	3 cut(s)	19, 157, 181
BstMBI	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstPAI	GACNNNNGTC	1 cut(s)	699
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	5 cut(s)	88, 245, 259, 262, 308
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BstZ17I	GTATAC	1 cut(s)	439
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	9, 191
Cac8I	GCNNGC	2 cut(s)	603, 627
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	3 cut(s)	101, 139, 607
Cfr10I	RCCGGY	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	10, 116, 192
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	16, 324
DinI	GGCGCC	1 cut(s)	606
DpnI	GATC	6 cut(s)	120, 144, 222, 513, 588, 657
DpnII	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	9, 191
Eco31I	GGTCTC	2 cut(s)	19, 181
Eco52I	CGGCCG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	9, 191
EgeI	GGCGCC	1 cut(s)	606
EheI	GGCGCC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	9, 191
FaeI	CATG	3 cut(s)	13, 119, 195
FaiI	YATR	9 cut(s)	11, 117, 171, 193, 439, 486, 501, 560, 623
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	9, 115, 191
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
Fsp4HI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
GlaI	GCGC	3 cut(s)	100, 138, 606
GluI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
HaeII	RGCGCY	3 cut(s)	102, 140, 608
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	3 cut(s)	96, 338, 626
HhaI	GCGC	3 cut(s)	101, 139, 607
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	13, 119, 195
Hin6I	GCGC	3 cut(s)	99, 137, 605
HinP1I	GCGC	3 cut(s)	99, 137, 605
HindIII	AAGCTT	2 cut(s)	326, 613
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	3 cut(s)	96, 338, 626
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	415, 507
Hpy188III	TCNNGA	3 cut(s)	218, 659, 708
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	47, 93, 391
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	3 cut(s)	74, 278, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	2 cut(s)	16, 324
HpySE526I	ACGT	1 cut(s)	539
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	13, 119, 195
HspAI	GCGC	3 cut(s)	99, 137, 605
KasI	GGCGCC	1 cut(s)	604
KroI	GCCGGC	1 cut(s)	625
KroNI	GCCGGC	1 cut(s)	627
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
Lsp1109I	GCAGC	5 cut(s)	88, 245, 259, 262, 308
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	6 cut(s)	120, 144, 222, 513, 588, 657
MboI	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
MboII	GAAGA	5 cut(s)	534, 593, 596, 633, 636
MflI	RGATCY	1 cut(s)	655
MluCI	AATT	4 cut(s)	305, 362, 479, 688
Mly113I	GGCGCC	1 cut(s)	605
MnlI	CCTC	8 cut(s)	150, 153, 167, 174, 262, 386, 414, 704
MroNI	GCCGGC	1 cut(s)	625
MseI	TTAA	3 cut(s)	330, 494, 611
MspCI	CTTAAG	1 cut(s)	610
MspI	CCGG	3 cut(s)	96, 338, 626
MspR9I	CCNGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NaeI	GCCGGC	1 cut(s)	627
NarI	GGCGCC	1 cut(s)	605
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	2 cut(s)	9, 191
NdeII	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
NgoMIV	GCCGGC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	13, 119, 195
NlaIV	GGNNCC	2 cut(s)	606, 657
NmeAIII	GCCGAG	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	103, 208, 235, 274, 277, 298
PluTI	GGCGCC	1 cut(s)	608
PshAI	GACNNNNGTC	1 cut(s)	699
PspEI	GGTNACC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	606, 657
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	330, 494, 611
SatI	GCNGC	6 cut(s)	102, 207, 234, 273, 276, 297
Sau3AI	GATC	6 cut(s)	118, 142, 220, 511, 586, 655
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	7 cut(s)	22, 301, 330, 378, 542, 556, 617
SfcI	CTRYAG	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	570, 610
SmoI	CTYRAG	2 cut(s)	570, 610
Sse9I	AATT	4 cut(s)	305, 362, 479, 688
SsiI	CCGC	3 cut(s)	206, 266, 369
SspDI	GGCGCC	1 cut(s)	604
SspI	AATATT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	9, 191
TaaI	ACNGT	3 cut(s)	47, 93, 391
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	305, 362, 479, 688
TatI	WGTACW	1 cut(s)	50
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	330, 494, 611
Tru9I	TTAA	3 cut(s)	330, 494, 611
TseI	GCWGC	5 cut(s)	101, 233, 272, 275, 296
TspDTI	ATGAA	2 cut(s)	534, 627
Vha464I	CTTAAG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	305, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.