Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Forward (+)

5517023 .. 5519279

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09511.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTGCCATGGTCTCAGTTCTATCTCGAGTGATTAGTGGAGACAGTAGCACTGATACTGACCCAAACCCTGCACTGCTTCAACTTCCCCAACAGTCCAGCACCGCCACACCGGAACTTGATCAATCCCATCAACAAGCGGCGCCAGATCAAGCAGGAAGCGTGAGGAGGAGACATTATAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCAGCCGAGATTCGTGATCCAAAGAAGGCAGCCCGAGTGTGGCTCGGAACTTTTGAAACGGCGGAGGCTGCTGCACTTGCTTATGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTTAACTTCCCGGAAAGAGTTCAAGGGACAAGTGAATCAGGCGGTTACCTCACAACTCAAACAGTTGCTCATCAGCCTCTCATTTCTGATTATCATCAGCAACAACTGGTATACCCGAATAATATCACTACTACTGATCAATATTATCCACAATTTTATGGGAACTTAAACTATGGTCAGCCAGATCCGAGATTTTATAACCAGCCTGCTACATCTTCATATCCACCTTTCATACCAATATCTCAAGCACAAGAAGAAGATCGACAACAACAGCCGGCCTTAAGCTCTCCTATGCCGGATTTCGGTTCACCGTCTTCAAGTTTGCATCCTGAATATCCACAGTATGATACTACAAGAAATTTTGACAATAGTCATTGGAGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

26.91

Weight (kDa)

6.06

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 108	1.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	4 cut(s)	105, 140, 275, 378
AclWI	GGATC	2 cut(s)	224, 515
AcsI	RAATTY	1 cut(s)	694
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	252, 638
AflII	CTTAAG	1 cut(s)	616
AgsI	TTSAA	5 cut(s)	83, 269, 319, 359, 654
AluBI	AGCT	4 cut(s)	308, 332, 337, 621
AluI	AGCT	4 cut(s)	308, 332, 337, 621
Alw26I	GTCTC	4 cut(s)	19, 36, 166, 190
AlwI	GGATC	2 cut(s)	224, 515
Ama87I	CYCGRG	2 cut(s)	27, 246
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	5 cut(s)	215, 242, 281, 284, 305
ApoI	RAATTY	1 cut(s)	694
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	636
AvaI	CYCGRG	2 cut(s)	27, 246
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	5 cut(s)	227, 254, 268, 271, 317
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	288
BclI	TGATCA	2 cut(s)	121, 472
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	19, 36, 166, 190
BfoI	RGCGCY	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	616
BisI	GCNGC	6 cut(s)	141, 216, 243, 282, 285, 306
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	6 cut(s)	142, 217, 244, 283, 286, 307
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	2 cut(s)	27, 246
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	670
BoxI	GACNNNNGTC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	2 cut(s)	19, 190
BsaJI	CCNNGG	2 cut(s)	9, 200
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 638
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	9, 200
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	252, 638
BseMII	CTCAG	2 cut(s)	30, 325
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	3 cut(s)	181, 184, 198
BseXI	GCAGC	5 cut(s)	227, 254, 268, 271, 317
BsgI	GTGCAG	2 cut(s)	57, 270
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	142
BsiHKCI	CYCGRG	2 cut(s)	27, 246
BsiSI	CCGG	4 cut(s)	113, 347, 611, 632
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	252, 638
BsmAI	GTCTC	4 cut(s)	19, 36, 166, 190
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	2 cut(s)	19, 190
BsoBI	CYCGRG	2 cut(s)	27, 246
Bsp143I	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	9, 200
BspACI	CCGC	4 cut(s)	105, 140, 275, 378
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	2 cut(s)	29, 324
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	224, 515
BspT107I	GGYRCC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	616
BspTNI	GGTCTC	2 cut(s)	19, 190
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	9, 200
BssMI	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
BssNAI	GTATAC	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	9, 200
Bst1107I	GTATAC	1 cut(s)	448
Bst4CI	ACNGT	5 cut(s)	47, 96, 400, 648, 678
BstACI	GRCGYC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	543, 612
BstDEI	CTNAG	3 cut(s)	16, 311, 333
BstDSI	CCRYGG	2 cut(s)	9, 200
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	661
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	124, 151, 232, 475, 523, 598
BstMAI	GTCTC	4 cut(s)	19, 36, 166, 190
BstMBI	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 290
BstPAI	GACNNNNGTC	1 cut(s)	705
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	5 cut(s)	227, 254, 268, 271, 317
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	9, 200
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	51, 74
Cac8I	GCNNGC	2 cut(s)	543, 612
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	610
CviAII	CATG	2 cut(s)	10, 201
DdeI	CTNAG	3 cut(s)	16, 311, 333
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	6 cut(s)	123, 150, 231, 474, 522, 597
DpnII	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	9, 200
Eco31I	GGTCTC	2 cut(s)	19, 190
Eco88I	CYCGRG	2 cut(s)	27, 246
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	9, 200
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	9, 200
FaeI	CATG	2 cut(s)	13, 204
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 326, 358
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	2 cut(s)	9, 200
FbaI	TGATCA	2 cut(s)	121, 472
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	6 cut(s)	141, 216, 243, 282, 285, 306
FokI	GGATG	1 cut(s)	648
Fsp4HI	GCNGC	6 cut(s)	141, 216, 243, 282, 285, 306
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	6 cut(s)	141, 216, 243, 282, 285, 306
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	4 cut(s)	113, 347, 611, 632
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	13, 204
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	223, 315, 371
HpaII	CCGG	4 cut(s)	113, 347, 611, 632
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	2 cut(s)	448, 644
Hpy188I	TCNGA	4 cut(s)	260, 314, 424, 525
Hpy188III	TCNNGA	3 cut(s)	27, 227, 665
Hpy8I	GTNNAC	2 cut(s)	448, 644
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	5 cut(s)	47, 96, 400, 648, 678
HpyCH4V	TGCA	3 cut(s)	74, 287, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 290
HpyF3I	CTNAG	3 cut(s)	16, 311, 333
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	13, 204
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	610
KroNI	GCCGGC	1 cut(s)	612
Ksp22I	TGATCA	2 cut(s)	121, 472
Kzo9I	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
Lsp1109I	GCAGC	5 cut(s)	227, 254, 268, 271, 317
LweI	GCATC	1 cut(s)	670
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	6 cut(s)	123, 150, 231, 474, 522, 597
MboI	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
MboII	GAAGA	4 cut(s)	543, 602, 605, 642
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	2 cut(s)	488, 694
Mly113I	GGCGCC	1 cut(s)	143
MnlI	CCTC	8 cut(s)	159, 162, 176, 183, 271, 395, 423, 710
MroNI	GCCGGC	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	339, 503, 617
MspCI	CTTAAG	1 cut(s)	616
MspI	CCGG	4 cut(s)	113, 347, 611, 632
MspR9I	CCNGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	281, 290
NaeI	GCCGGC	1 cut(s)	612
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	2 cut(s)	9, 200
NdeII	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
NgoMIV	GCCGGC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	13, 204
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	223, 315, 371
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	6 cut(s)	142, 217, 244, 283, 286, 307
PluTI	GGCGCC	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	339, 503, 617
SatI	GCNGC	6 cut(s)	141, 216, 243, 282, 285, 306
Sau3AI	GATC	6 cut(s)	121, 148, 229, 472, 520, 595
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	6 cut(s)	310, 334, 339, 387, 565, 623
SfaNI	GCATC	1 cut(s)	670
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	27, 579, 616
SmoI	CTYRAG	3 cut(s)	27, 579, 616
Sse9I	AATT	2 cut(s)	488, 694
SsiI	CCGC	4 cut(s)	105, 140, 275, 378
SspDI	GGCGCC	1 cut(s)	142
SspI	AATATT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	9, 200
TaaI	ACNGT	5 cut(s)	47, 96, 400, 648, 678
TaqI	TCGA	2 cut(s)	28, 598
TasI	AATT	2 cut(s)	488, 694
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	223, 315, 371
Tru1I	TTAA	3 cut(s)	339, 503, 617
Tru9I	TTAA	3 cut(s)	339, 503, 617
TscAI	CASTG	2 cut(s)	58, 81
TseI	GCWGC	5 cut(s)	215, 242, 281, 284, 305
TspDTI	ATGAA	3 cut(s)	315, 543, 556
TspRI	CASTG	2 cut(s)	58, 81
Vha464I	CTTAAG	1 cut(s)	616
XapI	RAATTY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.