Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

24005896 .. 24008511

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1147200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATCTTCGAGCCGTTTTGCTCATCAGCTCGATCTCAACATGAGATGTCTGCCATGGTCTCAGCTCTATCTCAAGTTCTTGGAAGCACTAACAACCAGACCCCAGCTGTTCAAGTGCCGATGGAGCCACCAATGATTGCTCCCCAGTCCAGCGCCATGGAGTCGCATGATGATCAATCTCCTCAACACGCTCGAGATCAAGGGACTGCGAGGAGAAGGCACTATAGAGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATTCGTGACCCGAAGAAGGCAGCTCGGGTGTGGCTCGGCACCTTTGAAACCGACGAGGCAGCGGCACTTGCTTATGATGAAGCAGCTCTCAGGTTTAAAGGAAGCAAAGCTAAGCTCAACTTTCCCGAAAGAGTTCAAGGAAGAATTACTGAATTAGGTTCCCTCACTGCCACTAGTACTCAACAAAACTTGCCAGCTGGGACATCTCAAGGAGTAATTACTGACCACCATCACCCTCTTTCTGATTATCAATATCAACTGCAGGCATTCCCTAATAATGTTGTTACTCCTCCTCATGATCAATATGCACAATATTTTCGGAGTGGTCACGAGTGCATAAGTTATGATTTACCAGCTACTCTTTATGAAAGAGAGATATTTGCTAACCAGACATCAGAAACTACTACATCGTCATCATCTTTATTACCTTTCTTACCATCTCATCAACAAGAAGATCAACAACATCCCTTAAGCTATTCTATGCCGGGGTTCGGGTCTTCTTCTTCTTCGAGTTCAAATCCTCCTCCTAGGAATAGGAACCGTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

273

Amino Acids

30.33

Weight (kDa)

6.83

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	74 - 123	1.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	811
AciI	CCGC	2 cut(s)	260, 329
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	283, 758
AflII	CTTAAG	1 cut(s)	736
AgsI	TTSAA	4 cut(s)	113, 314, 404, 783
AhlI	ACTAGT	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	64, 235
Ama87I	CYCGRG	2 cut(s)	192, 291
ApeKI	GCWGC	3 cut(s)	287, 326, 350
Asp700I	GAANNNNTTC	1 cut(s)	399
AspA2I	CCTAGG	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	2 cut(s)	192, 291
AvrII	CCTAGG	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	3 cut(s)	299, 338, 362
BccI	CCATC	3 cut(s)	115, 504, 712
BclI	TGATCA	2 cut(s)	172, 565
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	2 cut(s)	64, 235
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	441, 795
BfmI	CTRYAG	2 cut(s)	223, 527
BfoI	RGCGCY	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	736
BisI	GCNGC	5 cut(s)	261, 288, 327, 330, 351
BlnI	CCTAGG	1 cut(s)	794
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	5 cut(s)	262, 289, 328, 331, 352
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	753
BmeT110I	CYCGRG	2 cut(s)	192, 291
BmiI	GGNNCC	4 cut(s)	126, 307, 427, 806
BmrFI	CCNGG	1 cut(s)	753
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	756
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	57, 459
BpuMI	CCSGG	1 cut(s)	753
BsaI	GGTCTC	2 cut(s)	64, 235
BsaJI	CCNNGG	5 cut(s)	54, 156, 245, 752, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 758
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	54, 156, 245, 752, 794
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	283, 758
BseMII	CTCAG	3 cut(s)	75, 255, 370
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	6 cut(s)	171, 226, 243, 546, 549, 780
BseXI	GCAGC	3 cut(s)	299, 338, 362
BseYI	CCCAGC	2 cut(s)	103, 464
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	2 cut(s)	192, 291
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	2 cut(s)	217, 481
BslI	CCNNNNNNNGG	2 cut(s)	283, 758
BsmAI	GTCTC	2 cut(s)	64, 235
BsmFI	GGGAC	2 cut(s)	217, 481
BsmI	GAATGC	1 cut(s)	533
Bso31I	GGTCTC	2 cut(s)	64, 235
BsoBI	CYCGRG	2 cut(s)	192, 291
Bsp143I	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	3 cut(s)	54, 156, 245
BspACI	CCGC	2 cut(s)	260, 329
BspCNI	CTCAG	3 cut(s)	74, 256, 369
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	4 cut(s)	126, 307, 427, 806
BspMAI	CTGCAG	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	736
BspTNI	GGTCTC	2 cut(s)	64, 235
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	5 cut(s)	54, 156, 245, 752, 794
BssMI	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
BssSI	CACGAG	1 cut(s)	596
BssT1I	CCWWGG	4 cut(s)	54, 156, 245, 794
Bst2BI	CACGAG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	462, 531
BstDEI	CTNAG	4 cut(s)	61, 264, 356, 378
BstDSI	CCRYGG	3 cut(s)	54, 156, 245
BstF5I	GGATG	1 cut(s)	730
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	6 cut(s)	6, 35, 175, 199, 568, 724
BstMAI	GTCTC	2 cut(s)	64, 235
BstMBI	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 335
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	223, 527
BstV1I	GCAGC	3 cut(s)	299, 338, 362
BstV2I	GAAGAC	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	157
BtgI	CCRYGG	3 cut(s)	54, 156, 245
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	462, 531
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	6 cut(s)	41, 55, 157, 167, 246, 563
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	61, 264, 356, 378
DpnI	GATC	6 cut(s)	5, 34, 174, 198, 567, 723
DpnII	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
DraI	TTTAAA	1 cut(s)	364
Eco130I	CCWWGG	4 cut(s)	54, 156, 245, 794
Eco31I	GGTCTC	2 cut(s)	64, 235
Eco88I	CYCGRG	2 cut(s)	192, 291
EcoT14I	CCWWGG	4 cut(s)	54, 156, 245, 794
ErhI	CCWWGG	4 cut(s)	54, 156, 245, 794
FaeI	CATG	6 cut(s)	44, 58, 160, 170, 249, 566
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	217, 481
FatI	CATG	6 cut(s)	40, 54, 156, 166, 245, 562
FbaI	TGATCA	2 cut(s)	172, 565
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	261, 288, 327, 330, 351
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	5 cut(s)	261, 288, 327, 330, 351
FspBI	CTAG	2 cut(s)	441, 795
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	261, 288, 327, 330, 351
GsaI	CCCAGC	2 cut(s)	107, 468
HaeII	RGCGCY	1 cut(s)	156
HapII	CCGG	1 cut(s)	752
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	6 cut(s)	44, 58, 160, 170, 249, 566
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	812
HindII	GTYRAC	1 cut(s)	812
HinfI	GANTC	2 cut(s)	161, 268
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	812
Hpy188I	TCNGA	3 cut(s)	511, 588, 664
Hpy188III	TCNNGA	5 cut(s)	194, 272, 392, 563, 596
Hpy8I	GTNNAC	1 cut(s)	812
Hpy99I	CGWCG	2 cut(s)	323, 813
HpyAV	CCTTC	2 cut(s)	210, 277
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4V	TGCA	3 cut(s)	529, 575, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 335
HpyF3I	CTNAG	4 cut(s)	61, 264, 356, 378
Hsp92II	CATG	6 cut(s)	44, 58, 160, 170, 249, 566
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	2 cut(s)	172, 565
Kzo9I	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
LmnI	GCTCC	2 cut(s)	124, 145
Lsp1109I	GCAGC	3 cut(s)	299, 338, 362
MaeI	CTAG	2 cut(s)	441, 795
MaeIII	GTNAC	3 cut(s)	272, 550, 593
MalI	GATC	6 cut(s)	5, 34, 174, 198, 567, 723
MboI	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
MboII	GAAGA	7 cut(s)	292, 420, 731, 756, 759, 762, 765
MluCI	AATT	3 cut(s)	411, 419, 483
MlyI	GAGTC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	363, 737
MspA1I	CMGCKG	3 cut(s)	107, 329, 464
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	533
MwoI	GCNNNNNNNGC	2 cut(s)	124, 335
NciI	CCSGG	1 cut(s)	753
NcoI	CCATGG	3 cut(s)	54, 156, 245
NdeII	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
NlaIII	CATG	6 cut(s)	44, 58, 160, 170, 249, 566
NlaIV	GGNNCC	4 cut(s)	126, 307, 427, 806
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	272, 593
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	262, 289, 328, 331, 352
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	2 cut(s)	103, 464
PspN4I	GGNNCC	4 cut(s)	126, 307, 427, 806
PstI	CTGCAG	1 cut(s)	531
PvuII	CAGCTG	2 cut(s)	107, 464
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	363, 737
SatI	GCNGC	5 cut(s)	261, 288, 327, 330, 351
Sau3AI	GATC	6 cut(s)	3, 32, 172, 196, 565, 721
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	753
SfcI	CTRYAG	2 cut(s)	223, 527
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	4 cut(s)	72, 192, 474, 736
SmoI	CTYRAG	4 cut(s)	72, 192, 474, 736
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	3 cut(s)	411, 419, 483
SsiI	CCGC	2 cut(s)	260, 329
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	2 cut(s)	441, 795
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	4 cut(s)	54, 156, 245, 794
TaaI	ACNGT	1 cut(s)	809
TaqI	TCGA	5 cut(s)	9, 31, 193, 776, 811
TasI	AATT	3 cut(s)	411, 419, 483
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	2 cut(s)	263, 332
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	363, 737
Tru9I	TTAA	2 cut(s)	363, 737
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	272, 593
TseI	GCWGC	3 cut(s)	287, 326, 350
Tsp45I	GTSAC	2 cut(s)	272, 593
TspDTI	ATGAA	2 cut(s)	360, 648
TspRI	CASTG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	192
XmaJI	CCTAGG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	441, 795
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.