Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

15239276 .. 15239488

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGATCTTCGAGCCGTTTTTCTCGTCAGATCGATCTCAACATGAGATGTCTGCCATGGTCTCAGCTCTATCTCAAGTTCTTGGAAGCACTAACAACCAGACCCCAGCTGTTCAAGTGCCGATGGAGCCGCCACTGATTGCTCCCCAGTCCAGCGCCATGGAGTCGCATGATGATCAATCTCCTCCACAGGCTCGAGATCAAGGTTTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

71

Amino Acids

7.6

Weight (kDa)

4.28

Isoelectric Point (pI)

74.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	2 cut(s)	65, 107
AluI	AGCT	2 cut(s)	65, 107
Alw26I	GTCTC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	192
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	54, 156
Bse1I	ACTGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	54, 156
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	3, 28, 32, 172, 196
Bsp19I	CCATGG	2 cut(s)	54, 156
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	54, 156
BssMI	GATC	5 cut(s)	3, 28, 32, 172, 196
BssT1I	CCWWGG	2 cut(s)	54, 156
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	2 cut(s)	54, 156
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	5 cut(s)	6, 31, 35, 175, 199
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	5 cut(s)	3, 28, 32, 172, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	2 cut(s)	54, 156
BtsIMutI	CAGTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	31
CviAII	CATG	4 cut(s)	41, 55, 157, 167
CviJI	RGCY	5 cut(s)	13, 65, 107, 127, 191
CviKI_1	RGCY	5 cut(s)	13, 65, 107, 127, 191
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	5 cut(s)	5, 30, 34, 174, 198
DpnII	GATC	5 cut(s)	3, 28, 32, 172, 196
Eco130I	CCWWGG	2 cut(s)	54, 156
Eco31I	GGTCTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	54, 156
ErhI	CCWWGG	2 cut(s)	54, 156
FaeI	CATG	4 cut(s)	44, 58, 160, 170
FaiI	YATR	5 cut(s)	42, 56, 158, 168, 211
FatI	CATG	4 cut(s)	40, 54, 156, 166
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	156
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	44, 58, 160, 170
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	44, 58, 160, 170
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	3, 28, 32, 172, 196
LmnI	GCTCC	2 cut(s)	124, 145
LpnPI	CCDG	5 cut(s)	110, 117, 158, 163, 173
MalI	GATC	5 cut(s)	5, 30, 34, 174, 198
MboI	GATC	5 cut(s)	3, 28, 32, 172, 196
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	124
NcoI	CCATGG	2 cut(s)	54, 156
NdeII	GATC	5 cut(s)	3, 28, 32, 172, 196
NlaIII	CATG	4 cut(s)	44, 58, 160, 170
NlaIV	GGNNCC	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	3, 28, 32, 172, 196
SchI	GAGTC	1 cut(s)	170
SetI	ASST	3 cut(s)	67, 109, 205
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	72, 192
SmoI	CTYRAG	2 cut(s)	72, 192
SsiI	CCGC	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	54, 156
TaqI	TCGA	3 cut(s)	9, 31, 193
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.