Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

17390930 .. 17392620

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATCTTCGATCCGTTTTGCTCATCTGCTCGATCTCAACATGAGATGTCTGCCATGGTCTCAGCTCTAGCTCAAGTTCTTGGAAGCAATAACAGCCAGACCCCGGCTGTTCAAGAGCCGGCGGAGCCGCCACTGATCACGCCCCAGTCCAGCGCCATGGAATTGCATGATGGTCAATCTCCTCAACAGGCTCAAGATCAAGGGAATGTGAGGAGAAGGCACTATAGAGGAGTGAGGCAGAGACCATGGGGAAAGTGGGCATCTGAGATTCGTGACCCGAAGAAGGCCGCTCGAGTGTGGCTCGGCACCTTTGAAACCGCAGAGGCCGCAGCGCTTGCTTATGATGAAGCAGCTCTCAGGTTTAAAGGAAGCAAAGCTAAGCTCAACTTTCCCGAAAGAGTTCAGGGAAGAATTACTGAATTAGGTTACCTCACTACAACTAGTACTGAACAAAACTTGCCAGCTGGGGCATCTCAAAGTATTACGGACCACCACCAGCCTCTTCCTGATCATCAATATCAACTGCAGGCATTCCCTAATAATGTTGCTACTCCTCATGATCAATATGCACCATATTTTCTGAGTGGTAACGAGTGTGTAAATTATGATGATTTACCAACTACTCTTAGTGAAAGAGAAGGATTTGCTTTCCAGACTTCAGAAACTACTTCATCATCTTTGTTACCTTTCTTACCATCTCATCAACAAGAAGATCAACAACATCCCTTAAGCTATTCTATGCCGGCGTTCGGTTCCTCTTCTTCTTCGAGTTCAAATCCTCCCCCTAGGAATAGGAACCGTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

29.85

Weight (kDa)

6.13

Isoelectric Point (pI)

69.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	802
AciI	CCGC	5 cut(s)	122, 128, 288, 318, 327
AclWI	GGATC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	445
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	103, 283, 749
AflII	CTTAAG	1 cut(s)	727
AgsI	TTSAA	3 cut(s)	113, 314, 774
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	7 cut(s)	65, 71, 353, 377, 382, 464, 732
AluI	AGCT	7 cut(s)	65, 71, 353, 377, 382, 464, 732
Alw26I	GTCTC	2 cut(s)	64, 235
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	291
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	285, 324
ApeKI	GCWGC	2 cut(s)	329, 350
Asp700I	GAANNNNTTC	1 cut(s)	399
AspA2I	CCTAGG	1 cut(s)	785
AspLEI	GCGC	2 cut(s)	155, 334
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	487
AvrII	CCTAGG	1 cut(s)	785
BanI	GGYRCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	341, 362
BccI	CCATC	2 cut(s)	164, 703
BclI	TGATCA	3 cut(s)	135, 508, 559
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	64, 235
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	68, 441, 786
BfmI	CTRYAG	2 cut(s)	223, 524
BfoI	RGCGCY	2 cut(s)	156, 335
BfrI	CTTAAG	1 cut(s)	727
BisI	GCNGC	5 cut(s)	128, 288, 327, 330, 351
BlnI	CCTAGG	1 cut(s)	785
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	5 cut(s)	129, 289, 328, 331, 352
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	4 cut(s)	126, 307, 754, 797
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	269, 479
BmuI	ACTGGG	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	57, 177
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	2 cut(s)	64, 235
BsaJI	CCNNGG	5 cut(s)	54, 102, 156, 245, 785
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 283, 749
Bse118I	RCCGGY	2 cut(s)	118, 742
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	54, 102, 156, 245, 785
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	3 cut(s)	103, 283, 749
BseMII	CTCAG	4 cut(s)	75, 255, 370, 572
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	4 cut(s)	171, 226, 243, 543
BseXI	GCAGC	2 cut(s)	341, 362
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	2 cut(s)	287, 326
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	104, 119, 743
BslI	CCNNNNNNNGG	3 cut(s)	103, 283, 749
BsmAI	GTCTC	2 cut(s)	64, 235
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	287, 326
Bso31I	GGTCTC	2 cut(s)	64, 235
BsoBI	CYCGRG	1 cut(s)	291
Bsp143I	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	3 cut(s)	54, 156, 245
BspACI	CCGC	5 cut(s)	122, 128, 288, 318, 327
BspANI	GGCC	2 cut(s)	287, 326
BspCNI	CTCAG	4 cut(s)	74, 256, 369, 573
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	126, 307, 754, 797
BspMAI	CTGCAG	1 cut(s)	528
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	727
BspTNI	GGTCTC	2 cut(s)	64, 235
BsrBI	CCGCTC	1 cut(s)	290
BsrFI	RCCGGY	2 cut(s)	118, 742
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	2 cut(s)	118, 742
BssECI	CCNNGG	5 cut(s)	54, 102, 156, 245, 785
BssMI	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
BssT1I	CCWWGG	4 cut(s)	54, 156, 245, 785
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	2 cut(s)	507, 763
BstAFI	CTTAAG	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	5 cut(s)	120, 336, 462, 528, 744
BstDEI	CTNAG	6 cut(s)	61, 264, 356, 378, 581, 626
BstDSI	CCRYGG	3 cut(s)	54, 156, 245
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	721
BstH2I	RGCGCY	2 cut(s)	156, 335
BstHHI	GCGC	2 cut(s)	155, 334
BstKTI	GATC	8 cut(s)	6, 13, 35, 138, 199, 511, 562, 715
BstMAI	GTCTC	2 cut(s)	64, 235
BstMBI	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 124, 326, 335
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	223, 524
BstV1I	GCAGC	2 cut(s)	341, 362
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	287, 326
BtgI	CCRYGG	3 cut(s)	54, 156, 245
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	5 cut(s)	120, 336, 462, 528, 744
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	2 cut(s)	155, 334
Cfr10I	RCCGGY	2 cut(s)	118, 742
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	6 cut(s)	41, 55, 157, 167, 246, 557
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	6 cut(s)	61, 264, 356, 378, 581, 626
DpnI	GATC	8 cut(s)	5, 12, 34, 137, 198, 510, 561, 714
DpnII	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
DraI	TTTAAA	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	507, 763
EarI	CTCTTC	2 cut(s)	507, 763
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	4 cut(s)	54, 156, 245, 785
Eco31I	GGTCTC	2 cut(s)	64, 235
Eco47I	GGWCC	1 cut(s)	487
Eco47III	AGCGCT	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	4 cut(s)	54, 156, 245, 785
ErhI	CCWWGG	4 cut(s)	54, 156, 245, 785
FaeI	CATG	6 cut(s)	44, 58, 160, 170, 249, 560
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	6 cut(s)	40, 54, 156, 166, 245, 556
FbaI	TGATCA	3 cut(s)	135, 508, 559
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	5 cut(s)	128, 288, 327, 330, 351
FokI	GGATG	1 cut(s)	708
Fsp4HI	GCNGC	5 cut(s)	128, 288, 327, 330, 351
FspBI	CTAG	3 cut(s)	68, 441, 786
GlaI	GCGC	2 cut(s)	154, 333
GluI	GCNGC	5 cut(s)	128, 288, 327, 330, 351
GsaI	CCCAGC	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	156, 335
HaeIII	GGCC	2 cut(s)	287, 326
HapII	CCGG	3 cut(s)	104, 119, 743
HhaI	GCGC	2 cut(s)	155, 334
Hin1II	CATG	6 cut(s)	44, 58, 160, 170, 249, 560
Hin6I	GCGC	2 cut(s)	153, 332
HinP1I	GCGC	2 cut(s)	153, 332
HincII	GTYRAC	1 cut(s)	803
HindII	GTYRAC	1 cut(s)	803
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	104, 119, 743
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	3 cut(s)	265, 582, 661
Hpy188III	TCNNGA	7 cut(s)	113, 194, 272, 392, 506, 557, 652
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	1 cut(s)	804
HpyAV	CCTTC	3 cut(s)	210, 277, 632
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4V	TGCA	3 cut(s)	166, 526, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 124, 326, 335
HpyF3I	CTNAG	6 cut(s)	61, 264, 356, 378, 581, 626
Hsp92II	CATG	6 cut(s)	44, 58, 160, 170, 249, 560
HspAI	GCGC	2 cut(s)	153, 332
KroI	GCCGGC	2 cut(s)	118, 742
KroNI	GCCGGC	2 cut(s)	120, 744
Ksp22I	TGATCA	3 cut(s)	135, 508, 559
Kzo9I	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	341, 362
LweI	GCATC	2 cut(s)	269, 479
MaeI	CTAG	3 cut(s)	68, 441, 786
MaeIII	GTNAC	4 cut(s)	272, 425, 587, 681
MalI	GATC	8 cut(s)	5, 12, 34, 137, 198, 510, 561, 714
MbiI	CCGCTC	1 cut(s)	290
MboI	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
MboII	GAAGA	7 cut(s)	292, 420, 494, 722, 750, 753, 756
MluCI	AATT	4 cut(s)	161, 411, 419, 601
MroNI	GCCGGC	2 cut(s)	118, 742
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	363, 728
MspA1I	CMGCKG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	727
MspI	CCGG	3 cut(s)	104, 119, 743
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	530
MwoI	GCNNNNNNNGC	4 cut(s)	93, 124, 326, 335
NaeI	GCCGGC	2 cut(s)	120, 744
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	3 cut(s)	54, 156, 245
NdeII	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
NgoMIV	GCCGGC	2 cut(s)	118, 742
NlaIII	CATG	6 cut(s)	44, 58, 160, 170, 249, 560
NlaIV	GGNNCC	4 cut(s)	126, 307, 754, 797
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	556
PctI	GAATGC	1 cut(s)	530
PdiI	GCCGGC	2 cut(s)	120, 744
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	129, 289, 328, 331, 352
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	4 cut(s)	126, 307, 754, 797
PspPI	GGNCC	1 cut(s)	487
PspXI	VCTCGAGB	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	528
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	363, 728
SatI	GCNGC	5 cut(s)	128, 288, 327, 330, 351
Sau3AI	GATC	8 cut(s)	3, 10, 32, 135, 196, 508, 559, 712
Sau96I	GGNCC	1 cut(s)	487
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	269, 479
SfcI	CTRYAG	2 cut(s)	223, 524
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	487
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	4 cut(s)	72, 192, 291, 727
SmoI	CTYRAG	4 cut(s)	72, 192, 291, 727
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	4 cut(s)	161, 411, 419, 601
SsiI	CCGC	5 cut(s)	122, 128, 288, 318, 327
SspMI	CTAG	3 cut(s)	68, 441, 786
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	4 cut(s)	54, 156, 245, 785
TaaI	ACNGT	1 cut(s)	800
TaqI	TCGA	5 cut(s)	9, 31, 292, 767, 802
TasI	AATT	4 cut(s)	161, 411, 419, 601
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	3 cut(s)	130, 290, 329
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	363, 728
Tru9I	TTAA	2 cut(s)	363, 728
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	329, 350
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	360, 660
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	138
Vha464I	CTTAAG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	3 cut(s)	68, 441, 786
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.