Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

15237616 .. 15238288

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCACGTAATTAGGGTACTGAGAAGGCACTATAGAGGAGTGAGGCAGAGACCTTGGGGGAAGTGGGCAGCTGAGATTCGTGACCCGAAGAAGGCAGCTCGGGTGTGGCTCGGCACCTTTGAAACCGACGAGGCAGCGGCACTTGCTTATGATGAAGCAGCTCTCAGGTTTAAAGGAAGCAAAGCTAAGCTCAACTTTCCCGAAAGAGTTCAAGGAAGAATTACGGAATTAGGTTCCCTCACTGCCACTAGTACTCAACAAAACTTGCCAGCTGGGGCATCTCAAAGAGCATTCCCTAATAATGTTGTTACTCCTCCTCATGATCAATATGCACAATATTTTCGGAGTGGTCACGAGTGCATAAGTTATGATTTACCAGCTACTCTTTATGAAAGAGAGAGATTTGCTACCCAGACATCAGAAACTACTACATCGTCATCATCTTTATTACCTTTCTTACCATCTCATCAACAAGAAGATCAACAACATCCCTTAGGCTATTCTATGCCGGGGTTCGGGTCTTCTTCTTCGAGTTCAAATCCTCCTCACCGTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

9.66

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	1 cut(s)	137
AfaI	GTAC	2 cut(s)	18, 253
AfiI	CCNNNNNNNGG	2 cut(s)	91, 515
AgsI	TTSAA	3 cut(s)	122, 212, 537
AhlI	ACTAGT	1 cut(s)	248
AluBI	AGCT	7 cut(s)	71, 98, 161, 185, 190, 272, 380
AluI	AGCT	7 cut(s)	71, 98, 161, 185, 190, 272, 380
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	68, 95, 134, 158
Asp700I	GAANNNNTTC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	80, 107, 146, 170
BccI	CCATC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	5 cut(s)	69, 96, 135, 138, 159
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	70, 97, 136, 139, 160
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	115, 235
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	53, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 515
Bse21I	CCTNAGG	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	53, 509
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	91, 515
BseMII	CTCAG	3 cut(s)	11, 63, 178
BseRI	GAGGAG	4 cut(s)	51, 303, 306, 534
BseXI	GCAGC	4 cut(s)	80, 107, 146, 170
BseYI	CCCAGC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	91, 515
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	322, 478
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	3 cut(s)	12, 64, 177
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	115, 235
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	53, 509
BssMI	GATC	2 cut(s)	322, 478
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	20, 72, 164, 186, 493
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	2 cut(s)	325, 481
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	322, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	80, 107, 146, 170
BstV2I	GAAGAC	1 cut(s)	513
Bsu36I	CCTNAGG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	17, 252
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	9 cut(s)	71, 98, 109, 161, 185, 190, 272, 380, 498
CviKI_1	RGCY	9 cut(s)	71, 98, 109, 161, 185, 190, 272, 380, 498
CviQI	GTAC	2 cut(s)	17, 252
DdeI	CTNAG	5 cut(s)	20, 72, 164, 186, 493
DpnI	GATC	2 cut(s)	324, 480
DpnII	GATC	2 cut(s)	322, 478
DraI	TTTAAA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	323
FaiI	YATR	8 cut(s)	33, 150, 321, 330, 362, 369, 390, 506
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	69, 96, 135, 138, 159
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	69, 96, 135, 138, 159
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	5 cut(s)	69, 96, 135, 138, 159
GsaI	CCCAGC	1 cut(s)	276
HapII	CCGG	1 cut(s)	509
Hin1II	CATG	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	2 cut(s)	345, 421
Hpy188III	TCNNGA	4 cut(s)	80, 200, 320, 353
Hpy8I	GTNNAC	1 cut(s)	554
Hpy99I	CGWCG	2 cut(s)	131, 555
HpyAV	CCTTC	2 cut(s)	18, 85
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	4, 332, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	5 cut(s)	20, 72, 164, 186, 493
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	322, 478
LpnPI	CCDG	6 cut(s)	151, 258, 282, 390, 425, 522
Lsp1109I	GCAGC	4 cut(s)	80, 107, 146, 170
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	80, 307, 350
MalI	GATC	2 cut(s)	324, 480
MboI	GATC	2 cut(s)	322, 478
MboII	GAAGA	6 cut(s)	100, 228, 488, 513, 516, 519
MluCI	AATT	3 cut(s)	9, 219, 227
MnlI	CCTC	8 cut(s)	29, 36, 124, 248, 324, 327, 552, 555
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	3 cut(s)	71, 137, 272
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	322, 478
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	115, 235
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	80, 350
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	70, 97, 136, 139, 160
Ppu21I	YACGTR	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	115, 235
PvuII	CAGCTG	2 cut(s)	71, 272
RsaI	GTAC	2 cut(s)	18, 253
RsaNI	GTAC	2 cut(s)	17, 252
SalI	GTCGAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	5 cut(s)	69, 96, 135, 138, 159
Sau3AI	GATC	2 cut(s)	322, 478
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	31
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	3 cut(s)	9, 219, 227
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	530, 553
TasI	AATT	3 cut(s)	9, 219, 227
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	80, 350
TseI	GCWGC	4 cut(s)	68, 95, 134, 158
Tsp45I	GTSAC	2 cut(s)	80, 350
TspDTI	ATGAA	2 cut(s)	168, 405
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.