Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Forward (+)

61016778 .. 61017204

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0492300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCAGGCACAAAAGCTCATCCAGTGGTGGCTCTCGTGGCAGTGCTCATCATGGTCATCTCTCTCGCCGGCGTTGCACAGGCCCATGAAGGTCATGATCATGCTTCTGCTCCTGCGATTCCTCCAAGCACGACCTCCCCGGCCGCCTTCATCTCTCCGTCGTTCGTTTCTGCTTTCATCGCCGCCGCAGCGGCTCTCGTCTTCGGATCTGCTCTCATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

74

Amino Acids

7.22

Weight (kDa)

6.36

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	144, 183, 186, 191
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	141
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	2 cut(s)	81, 141
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	140
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	144, 183, 186, 189, 192
BlsI	GCNGC	5 cut(s)	145, 184, 187, 190, 193
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	83, 143
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	69, 140
BsnI	GGCC	2 cut(s)	83, 143
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	97, 206
BspACI	CCGC	4 cut(s)	144, 183, 186, 191
BspANI	GGCC	2 cut(s)	83, 143
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	97, 206
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	7, 70
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	100, 209
BstMBI	GATC	2 cut(s)	97, 206
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 74, 179, 188, 191
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	83, 143
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	30, 48
Cac8I	GCNNGC	2 cut(s)	7, 70
CciI	TCATGA	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	4 cut(s)	52, 86, 95, 101
CviJI	RGCY	5 cut(s)	17, 32, 83, 143, 194
CviKI_1	RGCY	5 cut(s)	17, 32, 83, 143, 194
DpnI	GATC	2 cut(s)	99, 208
DpnII	GATC	2 cut(s)	97, 206
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	141
FaeI	CATG	4 cut(s)	55, 89, 98, 104
FaiI	YATR	4 cut(s)	53, 87, 96, 102
FatI	CATG	4 cut(s)	51, 85, 94, 100
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	144, 183, 186, 189, 192
FokI	GGATG	1 cut(s)	6
Fsp4HI	GCNGC	5 cut(s)	144, 183, 186, 189, 192
GluI	GCNGC	5 cut(s)	144, 183, 186, 189, 192
HaeIII	GGCC	2 cut(s)	83, 143
HapII	CCGG	2 cut(s)	69, 140
Hin1II	CATG	4 cut(s)	55, 89, 98, 104
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	69, 140
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	83, 157
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 74, 179, 188, 191
Hsp92II	CATG	4 cut(s)	55, 89, 98, 104
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 206
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	36, 65, 82, 126, 153
Lsp1109I	GCAGC	1 cut(s)	200
MalI	GATC	2 cut(s)	99, 208
MboI	GATC	2 cut(s)	97, 206
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	132, 145
MreI	CGCCGGCG	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	69, 140
MspR9I	CCNGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	38, 74, 179, 188, 191
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	97, 206
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	55, 89, 98, 104
PagI	TCATGA	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	145, 184, 187, 190, 193
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	99
SatI	GCNGC	5 cut(s)	144, 183, 186, 189, 192
Sau3AI	GATC	2 cut(s)	97, 206
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	19, 94, 137
SgrAI	CRCCGGYG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	99
SsiI	CCGC	4 cut(s)	144, 183, 186, 191
StyD4I	CCNGG	1 cut(s)	138
TauI	GCSGC	4 cut(s)	146, 185, 188, 194
TfiI	GAWTC	1 cut(s)	118
TscAI	CASTG	2 cut(s)	30, 48
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	102, 139, 166
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	30, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.