Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011721

Physical Location & Seq

Genomic Coordinates Reverse (-)

13140434 .. 13143299

Gene Structure 2866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTGCCATGGTCTCAGCTCTAGCTCAAGTGATTGGAATCACTGACCAAACCCCAGTGGTTCAAGTGCCCGCCGAGCCATTGGTAAACCCCCTGCCCAGCGCCATGGAATTGCATGACGATCAACCTCCTCAACTGCAGGCTGCTCAAAATCAAGGTAATGTGAGGAGAAGGCACTATAGAGGTGTGAGGCAAAGACCTTGGGGAAAATGGGCGGCGGAGATTCGTGATCCAAATAAGGCAGCCCGAGTGTGGCTTGGAACCTTCGAAACAGCCGAGGCTGCCGCACTTGCTTATGATGCGGCAGCTTTGAGATTCAAAGGAAGCAAAGCTAAGCTTAATTTCCCAGAAAGAGTTCAAGGAGGAGATGAGTTGGGTTATCTCACAACAACTGGGCCACAGGACTTAGCAGCTGGGGGGAGTCGAAGAACTGAATTGGCTCATCACAATCAGCCTCTTTCTGATCATCAATATCAACTGCAGGCAAATCCCAATAATGTTAATTTTACTCAACCTGATCAATATGCACAATATTTTCGAGGCGGTAATTATGAGAACCTAAGTTATGATGTTTTACCAAGTACTTTTTACGAGAGAGAAAGATCATTTTTTTCCCAGACTTTATCAGCTACCACTACTACATCTTCATCATCATCTTCAGTGGCCTTCGTACCATCTCAACAAGAAGATCAAGATCAACATGTGCAACAACAACAGCCCTTAAGCTTTTCTATGGCGCAGCAGCCGTTTGGTTCTTCTTCTTCTTCGAGTTCAGACCCTTATAAGAACAAGAAAGACTTTGGACAGCACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043207 GO:0043565 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

30.0

Weight (kDa)

6.16

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43160
fragaria_vesca	FvH4_5g09511 FvH4_5g09511
malus_domestica	MD06G1130400.v1.1 MD14G1147200.v1.1
prunus_persica	Prupe.5G141300_v2.0.a1
pyrus_communis	pycom06g12220 pycom14g12180 pycom14g12190
rosa_chinensis	RchiOBHm_Chr7g0188691
rosa_laevigata	RLG00000004669
rosa_multiflora	Rmu_sc0001576.1_g000029
rosa_roxburghii	Rroxscaffold_3G00266130
rosa_rugosa	Rorug06G0492300
rosa_samantha	Rh7AG097200 Rh7BG099000 Rh7CG100800 Rh7DG099500
rosa_wichuraiana	Rw7G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	783
AciI	CCGC	6 cut(s)	72, 215, 218, 285, 302, 543
AclWI	GGATC	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	583, 672
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	721
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	3 cut(s)	65, 319, 359
AluBI	AGCT	8 cut(s)	20, 26, 308, 332, 337, 413, 629, 726
AluI	AGCT	8 cut(s)	20, 26, 308, 332, 337, 413, 629, 726
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	2 cut(s)	395, 663
ApeKI	GCWGC	7 cut(s)	143, 242, 281, 305, 410, 739, 742
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	104, 739
AspS9I	GGNCC	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	72
BbvI	GCAGC	7 cut(s)	130, 254, 268, 317, 422, 751, 754
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	1 cut(s)	730
BclI	TGATCA	2 cut(s)	463, 517
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	3 cut(s)	137, 178, 479
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	721
BlpI	GCTNAGC	1 cut(s)	333
BmcAI	AGTACT	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	262
BmrI	ACTGGG	2 cut(s)	50, 402
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	2 cut(s)	50, 402
Bpu1102I	GCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	38, 693
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	4 cut(s)	9, 105, 200, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	56, 397
Bse8I	GATNNNNATC	2 cut(s)	38, 693
BseDI	CCNNGG	4 cut(s)	9, 105, 200, 276
BseJI	GATNNNNATC	2 cut(s)	38, 693
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	56, 397
BseRI	GAGGAG	3 cut(s)	120, 181, 378
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	7 cut(s)	130, 254, 268, 317, 422, 751, 754
BseYI	CCCAGC	2 cut(s)	98, 413
BshFI	GGCC	2 cut(s)	397, 665
BsiHKCI	CYCGRG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	397, 665
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	9, 105
BspACI	CCGC	6 cut(s)	72, 215, 218, 285, 302, 543
BspANI	GGCC	2 cut(s)	397, 665
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	2 cut(s)	141, 483
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	56, 397
BssECI	CCNNGG	4 cut(s)	9, 105, 200, 276
BssMI	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
BssT1I	CCWWGG	3 cut(s)	9, 105, 200
BstAFI	CTTAAG	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	72, 141, 483
BstDEI	CTNAG	5 cut(s)	16, 333, 406, 560, 813
BstDSI	CCRYGG	2 cut(s)	9, 105
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 739
BstKTI	GATC	7 cut(s)	124, 232, 466, 520, 605, 691, 697
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 281, 290, 299
BstNSI	RCATGY	1 cut(s)	704
BstSFI	CTRYAG	3 cut(s)	137, 178, 479
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	7 cut(s)	130, 254, 268, 317, 422, 751, 754
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	397, 665
BtgI	CCRYGG	2 cut(s)	9, 105
BtsIMutI	CAGTG	3 cut(s)	42, 63, 666
Cac8I	GCNNGC	3 cut(s)	72, 141, 483
CfoI	GCGC	2 cut(s)	104, 739
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	582, 671
CviAII	CATG	4 cut(s)	10, 106, 116, 701
CviQI	GTAC	2 cut(s)	582, 671
DdeI	CTNAG	5 cut(s)	16, 333, 406, 560, 813
DpnI	GATC	7 cut(s)	123, 231, 465, 519, 604, 690, 696
DpnII	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
EciI	GGCGGA	1 cut(s)	233
Eco130I	CCWWGG	3 cut(s)	9, 105, 200
Eco31I	GGTCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	246
EcoT14I	CCWWGG	3 cut(s)	9, 105, 200
ErhI	CCWWGG	3 cut(s)	9, 105, 200
FaeI	CATG	4 cut(s)	13, 109, 119, 704
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 782, 814
FatI	CATG	4 cut(s)	9, 105, 115, 700
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	2 cut(s)	463, 517
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	103, 738
GsaI	CCCAGC	2 cut(s)	102, 417
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	397, 665
HhaI	GCGC	2 cut(s)	104, 739
Hin1II	CATG	4 cut(s)	13, 109, 119, 704
Hin6I	GCGC	2 cut(s)	102, 737
HinP1I	GCGC	2 cut(s)	102, 737
HindIII	AAGCTT	2 cut(s)	335, 724
HinfI	GANTC	4 cut(s)	39, 223, 315, 421
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	463, 775
Hpy188III	TCNNGA	2 cut(s)	227, 692
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	165, 274, 676
HpyCH4V	TGCA	5 cut(s)	115, 139, 481, 527, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 281, 290, 299
HpyF3I	CTNAG	5 cut(s)	16, 333, 406, 560, 813
Hsp92II	CATG	4 cut(s)	13, 109, 119, 704
HspAI	GCGC	2 cut(s)	102, 737
Ksp22I	TGATCA	2 cut(s)	463, 517
Kzo9I	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
Lsp1109I	GCAGC	7 cut(s)	130, 254, 268, 317, 422, 751, 754
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	23
MalI	GATC	7 cut(s)	123, 231, 465, 519, 604, 690, 696
MboI	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
MboII	GAAGA	8 cut(s)	438, 636, 648, 698, 747, 750, 753, 756
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	5 cut(s)	110, 340, 434, 502, 547
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	9 cut(s)	138, 141, 159, 176, 183, 271, 356, 465, 533
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	339, 501, 722
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	76, 281, 290, 299
NcoI	CCATGG	2 cut(s)	9, 105
NdeII	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
NlaIII	CATG	4 cut(s)	13, 109, 119, 704
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	2 cut(s)	100, 301
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	267
PciI	ACATGT	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	39, 223, 315
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PscI	ACATGT	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	783
PspFI	CCCAGC	2 cut(s)	98, 413
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	141, 483
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	583, 672
RsaNI	GTAC	2 cut(s)	582, 671
SaqAI	TTAA	3 cut(s)	339, 501, 722
Sau3AI	GATC	7 cut(s)	121, 229, 463, 517, 602, 688, 694
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	3 cut(s)	137, 178, 479
SfuI	TTCGAA	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	27, 721
SmoI	CTYRAG	2 cut(s)	27, 721
Sse9I	AATT	5 cut(s)	110, 340, 434, 502, 547
SsiI	CCGC	6 cut(s)	72, 215, 218, 285, 302, 543
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	3 cut(s)	9, 105, 200
TaqI	TCGA	4 cut(s)	267, 424, 538, 767
TasI	AATT	5 cut(s)	110, 340, 434, 502, 547
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	3 cut(s)	218, 287, 305
TfiI	GAWTC	3 cut(s)	39, 223, 315
Tru1I	TTAA	3 cut(s)	339, 501, 722
Tru9I	TTAA	3 cut(s)	339, 501, 722
TscAI	CASTG	3 cut(s)	49, 63, 666
TseI	GCWGC	7 cut(s)	143, 242, 281, 305, 410, 739, 742
TspDTI	ATGAA	1 cut(s)	636
TspRI	CASTG	3 cut(s)	49, 63, 666
Vha464I	CTTAAG	1 cut(s)	721
XceI	RCATGY	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.