AT1G44000

Protein STAY-GREEN LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009103
Physical Location & Seq
Reverse (-)
16708004 .. 16709713
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44000.1

Sequence Viewer

Length: 783 bp
ATGGCCTGTTACATCGTTCCTTATTACCACCATCCTGTTTTGTCTCATCCCAATAGAGAAATCTTCAGTCACCGTCACCACCACCACCACCGTTTCTGCAACAATCTCTTGAATAGAAGAATTAGTGTTCCTCGAAGCTCCGCTATTAGTGACGGTGGTGTCTCCTACAATACTCTAGTCTCCGAGGCGGTGAGGCTTTTGGTTCCACAAGCAAACTTTGATTCTTCAAAGCTTAAAGTTGAGTTCTTAGGAGAGTTATTGGAGAACAAGAGTAACGGAGGAATTATTACGCCGCGGACTTATATTCTTTCGCATTGTGACTTCACTGCTAACTTAACGTTAACAATCTCAAACGTTATCAATCTGGATCAACTAGAAGGCTGGTACAAGAAAGATGATGTGGTTGCTGAGTGGAAGAAGGTGAATGATGAGCTGCGTTTACATATTCATTGTTGTGTGAGTGGTATGAGTTTATTGCAGGATGTTGCTGCTGAGCTTAGGTATCATATTTTCTCCAAGGAATTGCCTTTGGTACTTAAAGCTGTGGTGCATGGAGATTCAGTTATGTTTAGAGAGAATCCTGAGCTAATGGATGCTTATGTATGGGTTTATTTCCATTCAAGCACACCTAAGTACAATCGGATCGAGTGTTGGGGACCTCTTAAGGATGCTGCGAAGGGAAAGCAGCAGGGCAATCATCAAGGCTTCTTGAGTTCGACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCTTATTTACGTTTCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko00860 ko01110 map00860 map01110
Pfam Domains
Protein Families
Staygreen

Protein Analysis

260

Amino Acids

29.89

Weight (kDa)

8.83

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Staygreen PF12638 72 - 224 2.3e-58 Staygreen protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccII CGCG 1 cut(s) 295
AciI CCGC 4 cut(s) 141, 188, 293, 295
AclI AACGTT 2 cut(s) 338, 354
AclWI GGATC 2 cut(s) 375, 650
AcuI CTGAAG 1 cut(s) 49
AfaI GTAC 3 cut(s) 386, 534, 635
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 3 cut(s) 112, 228, 621
AluBI AGCT 6 cut(s) 138, 232, 433, 496, 542, 586
AluI AGCT 6 cut(s) 138, 232, 433, 496, 542, 586
Alw26I GTCTC 3 cut(s) 48, 166, 184
AlwI GGATC 2 cut(s) 375, 650
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 433, 488, 671, 685
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 4 cut(s) 62, 68, 202, 433
AvaII GGWCC 1 cut(s) 656
BbvI GCAGC 4 cut(s) 420, 475, 658, 697
BccI CCATC 1 cut(s) 39
BcoDI GTCTC 3 cut(s) 48, 166, 184
BfaI CTAG 2 cut(s) 176, 374
BfrI CTTAAG 1 cut(s) 662
BisI GCNGC 5 cut(s) 293, 434, 489, 672, 686
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 5 cut(s) 294, 435, 490, 673, 687
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 2 cut(s) 204, 657
BmsI GCATC 2 cut(s) 583, 658
BoxI GACNNNNGTC 1 cut(s) 745
Bpu10I CCTNAGC 2 cut(s) 497, 582
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 730
BsaJI CCNNGG 3 cut(s) 183, 293, 516
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
BseDI CCNNGG 3 cut(s) 183, 293, 516
BseGI GGATG 5 cut(s) 31, 46, 487, 598, 673
BseMII CTCAG 3 cut(s) 399, 483, 573
BseXI GCAGC 4 cut(s) 420, 475, 658, 697
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 669
BsmAI GTCTC 3 cut(s) 48, 166, 184
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 367, 642
Bsp1720I GCTNAGC 1 cut(s) 492
BspACI CCGC 4 cut(s) 141, 188, 293, 295
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 400, 484, 574
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 204, 657
BspPI GGATC 2 cut(s) 375, 650
BspTI CTTAAG 1 cut(s) 662
BssECI CCNNGG 3 cut(s) 183, 293, 516
BssMI GATC 2 cut(s) 367, 642
BssT1I CCWWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 74, 92, 155
BstAFI CTTAAG 1 cut(s) 662
BstDEI CTNAG 6 cut(s) 247, 408, 492, 497, 582, 630
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 5 cut(s) 31, 46, 487, 598, 673
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 2 cut(s) 370, 645
BstMAI GTCTC 3 cut(s) 48, 166, 184
BstMBI GATC 2 cut(s) 367, 642
BstPAI GACNNNNGTC 1 cut(s) 745
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 420, 475, 658, 697
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 5 cut(s) 31, 46, 487, 598, 673
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 656
Cfr42I CCGCGG 1 cut(s) 296
Csp6I GTAC 3 cut(s) 385, 533, 634
CviAII CATG 1 cut(s) 551
CviQI GTAC 3 cut(s) 385, 533, 634
DdeI CTNAG 6 cut(s) 247, 408, 492, 497, 582, 630
DpnI GATC 2 cut(s) 369, 644
DpnII GATC 2 cut(s) 367, 642
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 1 cut(s) 554
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 1 cut(s) 669
FatI CATG 1 cut(s) 550
Fnu4HI GCNGC 5 cut(s) 293, 434, 489, 672, 686
FokI GGATG 5 cut(s) 18, 33, 494, 605, 680
Fsp4HI GCNGC 5 cut(s) 293, 434, 489, 672, 686
FspBI CTAG 2 cut(s) 176, 374
GluI GCNGC 5 cut(s) 293, 434, 489, 672, 686
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 554
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 221, 557, 577, 736
HpaI GTTAAC 1 cut(s) 342
HphI GGTGA 4 cut(s) 62, 68, 202, 433
Hpy166II GTNNAC 2 cut(s) 342, 440
Hpy188I TCNGA 2 cut(s) 184, 642
Hpy188III TCNNGA 4 cut(s) 109, 365, 581, 709
Hpy8I GTNNAC 2 cut(s) 342, 440
Hpy99I CGWCG 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 371, 412, 670
HpyCH4III ACNGT 3 cut(s) 74, 92, 155
HpyCH4IV ACGT 3 cut(s) 338, 354, 770
HpyCH4V TGCA 3 cut(s) 99, 478, 550
HpyF3I CTNAG 6 cut(s) 247, 408, 492, 497, 582, 630
HpySE526I ACGT 3 cut(s) 338, 354, 770
Hsp92II CATG 1 cut(s) 554
KspAI GTTAAC 1 cut(s) 342
KspI CCGCGG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 367, 642
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 19, 48, 350, 367, 464, 594, 674
Lsp1109I GCAGC 4 cut(s) 420, 475, 658, 697
LweI GCATC 2 cut(s) 583, 658
MaeI CTAG 2 cut(s) 176, 374
MaeII ACGT 3 cut(s) 338, 354, 770
MaeIII GTNAC 6 cut(s) 8, 68, 74, 149, 272, 317
MalI GATC 2 cut(s) 369, 644
MboI GATC 2 cut(s) 367, 642
MboII GAAGA 6 cut(s) 55, 129, 216, 427, 745, 767
MluCI AATT 4 cut(s) 120, 282, 521, 731
MnlI CCTC 6 cut(s) 141, 178, 186, 272, 669, 720
MseI TTAA 5 cut(s) 234, 335, 341, 537, 663
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 295
MspCI CTTAAG 1 cut(s) 662
MvnI CGCG 1 cut(s) 295
NdeII GATC 2 cut(s) 367, 642
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 2 cut(s) 204, 657
NmuCI GTSAC 4 cut(s) 68, 74, 149, 317
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PfeI GAWTC 4 cut(s) 221, 557, 577, 736
PkrI GCNGC 5 cut(s) 294, 435, 490, 673, 687
PpuMI RGGWCCY 1 cut(s) 656
PshAI GACNNNNGTC 1 cut(s) 745
Psp1406I AACGTT 2 cut(s) 338, 354
Psp5II RGGWCCY 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 204, 657
PspPI GGNCC 1 cut(s) 656
PspPPI RGGWCCY 1 cut(s) 656
RsaI GTAC 3 cut(s) 386, 534, 635
RsaNI GTAC 3 cut(s) 385, 533, 634
RseI CAYNNNNRTG 1 cut(s) 453
SacII CCGCGG 1 cut(s) 296
SaqAI TTAA 5 cut(s) 234, 335, 341, 537, 663
SatI GCNGC 5 cut(s) 293, 434, 489, 672, 686
Sau3AI GATC 2 cut(s) 367, 642
Sau96I GGNCC 1 cut(s) 656
SfaNI GCATC 2 cut(s) 583, 658
Sfr303I CCGCGG 1 cut(s) 296
SgrBI CCGCGG 1 cut(s) 296
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 662, 709
SmoI CTYRAG 2 cut(s) 662, 709
Sse9I AATT 4 cut(s) 120, 282, 521, 731
SsiI CCGC 4 cut(s) 141, 188, 293, 295
SspMI CTAG 2 cut(s) 176, 374
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 74, 92, 155
TaiI ACGT 3 cut(s) 341, 357, 773
TaqI TCGA 5 cut(s) 133, 645, 716, 725, 739
TasI AATT 4 cut(s) 120, 282, 521, 731
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 4 cut(s) 221, 557, 577, 736
Tru1I TTAA 5 cut(s) 234, 335, 341, 537, 663
Tru9I TTAA 5 cut(s) 234, 335, 341, 537, 663
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 4 cut(s) 68, 74, 149, 317
TseI GCWGC 4 cut(s) 433, 488, 671, 685
Tsp45I GTSAC 4 cut(s) 68, 74, 149, 317
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 331
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 656
XspI CTAG 2 cut(s) 176, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.