Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009103

Physical Location & Seq

Genomic Coordinates Forward (+)

498358 .. 500428

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCACTCATTGTGCTTATTATGTATTTCCACCATCGCCACTGAGGACCTTGAACAAAACCACAACTTTTGTCTCCCCAAAAAAACCCAATAAGTCTGTTTTGCTTTCTGCCATCAACAACAACACAGACTCCTACAATGCCTTTGTTTCTGAGGCCGCTAGTTTTTTGGGTCCAGCGAGATTCGAAGCCTCCAAACTAAAAGTTGAATTTATGGGAGAAGAGATGGATAATTATGTTGGAATCACCCCGAGAACATATATCCTATCTCACTGTGACTTCACAGCTAACCTGACCTTAAAGATCTCCAATGTCATCAACCTCGATCAGCTAAAAGGATGGTACAGCAAGGATGACGTCGTTGCAGAATGGAAAAAGGTGAATGGTGAAATGTGCCTGCATATCCATTGCTATGTGAGCGGTCCCAATATGCTTAACCTGGCTGCCGAGTTCAGATATCACATCTTTTCCAAAGAAATGCCTTTGGTACTCAAAGCTTTGTTACATGGAGACTCGCTACTTTTCAGAGAGCATCCCGAACTATTGAATGCTTTGGTTCGGGTTTACTTTCATTCTAGTTTGAAGAAGTACAACAGAATTGAATGCTGGGGGCCTCTCAAGGATGCTGTAGAGGGAAGACAAGGGGATCACACCAAACGAATAGCTGCACGTACAGATTCTTCCCATCCTCGGGACAAGTGGGGAACGCCAAAATCCATATTTCAAGTTCTATTTGCATTCCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

250

Amino Acids

28.35

Weight (kDa)

8.98

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44000
fragaria_vesca	FvH4_2g01060 FvH4_2g01060 FvH4_2g05260
malus_domestica	MD05G1008700.v1.1
prunus_persica	Prupe.8G010500_v2.0.a1 Prupe.8G010500_v2.0.a1 Prupe.8G010500_v2.0.a1 Prupe.8G010500_v2.0.a1
pyrus_communis	pycom05g00440
rosa_chinensis	RchiOBHm_Chr6g0251541
rosa_laevigata	RLG00000015460
rosa_multiflora	Rmu_sc0001382.1_g000021 Rmu_sc0006171.1_g000003
rosa_roxburghii	Rroxscaffold_7G00216600
rosa_rugosa	Rorug05G0503000
rosa_samantha	Rh6AG011700 Rh6BG000400 Rh6BG010500 Rh6CG009100 Rh6DG010100
rosa_wichuraiana	Rw6G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
AccBSI	CCGCTC	1 cut(s)	420
AciI	CCGC	2 cut(s)	159, 420
AclWI	GGATC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	4 cut(s)	344, 489, 590, 673
AfiI	CCNNNNNNNGG	2 cut(s)	690, 691
AgsI	TTSAA	6 cut(s)	55, 209, 547, 583, 602, 725
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	287, 331, 497, 665
AluI	AGCT	4 cut(s)	287, 331, 497, 665
Alw26I	GTCTC	2 cut(s)	79, 504
AlwI	GGATC	1 cut(s)	654
Ama87I	CYCGRG	2 cut(s)	250, 690
AoxI	GGCC	3 cut(s)	3, 156, 611
ApeKI	GCWGC	2 cut(s)	443, 665
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	48, 173, 422, 611
AsuHPI	GGTGA	3 cut(s)	238, 391, 398
AsuII	TTCGAA	1 cut(s)	186
AvaI	CYCGRG	2 cut(s)	250, 690
AvaII	GGWCC	3 cut(s)	48, 173, 422
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BbsI	GAAGAC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	430, 652
BccI	CCATC	5 cut(s)	43, 122, 220, 333, 693
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	79, 504
BfaI	CTAG	2 cut(s)	162, 576
BfmI	CTRYAG	1 cut(s)	627
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	159, 444, 666
BlsI	GCNGC	3 cut(s)	160, 445, 667
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	3 cut(s)	48, 173, 422
BmeT110I	CYCGRG	2 cut(s)	250, 690
BmgT120I	GGNCC	4 cut(s)	48, 173, 422, 611
BmiI	GGNNCC	3 cut(s)	174, 424, 612
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	541, 613
BpiI	GAAGAC	1 cut(s)	643
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 691
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	5 cut(s)	344, 358, 532, 628, 685
BseLI	CCNNNNNNNGG	2 cut(s)	690, 691
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	35, 144
BseXI	GCAGC	2 cut(s)	430, 652
BseYI	CCCAGC	1 cut(s)	606
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	5, 158, 613
BsiHKCI	CYCGRG	2 cut(s)	250, 690
BslFI	GGGAC	2 cut(s)	408, 707
BslI	CCNNNNNNNGG	2 cut(s)	690, 691
BsmAI	GTCTC	2 cut(s)	79, 504
BsmFI	GGGAC	2 cut(s)	408, 707
BsmI	GAATGC	3 cut(s)	553, 608, 737
BsnI	GGCC	3 cut(s)	5, 158, 613
BsoBI	CYCGRG	2 cut(s)	250, 690
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	303, 325, 646
BspACI	CCGC	2 cut(s)	159, 420
BspANI	GGCC	3 cut(s)	5, 158, 613
BspCNI	CTCAG	2 cut(s)	36, 145
BspLI	GGNNCC	3 cut(s)	174, 424, 612
BspPI	GGATC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	3 cut(s)	303, 325, 646
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	44, 153
BstF5I	GGATG	5 cut(s)	344, 358, 532, 628, 685
BstKTI	GATC	3 cut(s)	306, 328, 649
BstMAI	GTCTC	2 cut(s)	79, 504
BstMBI	GATC	3 cut(s)	303, 325, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	430, 652
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 158, 613
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	5 cut(s)	344, 358, 532, 628, 685
BtsIMutI	CAGTG	2 cut(s)	41, 271
Cac8I	GCNNGC	1 cut(s)	398
Cfr13I	GGNCC	4 cut(s)	48, 173, 422, 611
Csp6I	GTAC	4 cut(s)	343, 488, 589, 672
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	1 cut(s)	506
CviJI	RGCY	9 cut(s)	5, 158, 191, 287, 331, 443, 497, 613, 665
CviKI_1	RGCY	9 cut(s)	5, 158, 191, 287, 331, 443, 497, 613, 665
CviQI	GTAC	4 cut(s)	343, 488, 589, 672
DdeI	CTNAG	2 cut(s)	44, 153
DpnI	GATC	3 cut(s)	305, 327, 648
DpnII	GATC	3 cut(s)	303, 325, 646
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	458
Eco47I	GGWCC	3 cut(s)	48, 173, 422
Eco88I	CYCGRG	2 cut(s)	250, 690
EcoO109I	RGGNCCY	2 cut(s)	48, 611
EcoRII	CCWGG	1 cut(s)	438
EcoRV	GATATC	1 cut(s)	458
FaeI	CATG	1 cut(s)	509
FaqI	GGGAC	2 cut(s)	408, 707
FatI	CATG	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	159, 444, 666
FokI	GGATG	5 cut(s)	351, 365, 519, 635, 672
Fsp4HI	GCNGC	3 cut(s)	159, 444, 666
FspBI	CTAG	2 cut(s)	162, 576
GluI	GCNGC	3 cut(s)	159, 444, 666
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	3 cut(s)	5, 158, 613
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	509
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	5 cut(s)	131, 183, 243, 512, 677
HphI	GGTGA	3 cut(s)	238, 391, 398
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	154, 455, 527
Hpy188III	TCNNGA	2 cut(s)	536, 692
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	357, 670
HpyCH4V	TGCA	4 cut(s)	365, 400, 668, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	2 cut(s)	44, 153
HpySE526I	ACGT	2 cut(s)	357, 670
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	303, 325, 646
LpnPI	CCDG	6 cut(s)	189, 305, 410, 425, 452, 592
Lsp1109I	GCAGC	2 cut(s)	430, 652
LweI	GCATC	2 cut(s)	541, 613
MaeI	CTAG	2 cut(s)	162, 576
MaeII	ACGT	2 cut(s)	357, 670
MaeIII	GTNAC	2 cut(s)	275, 501
MalI	GATC	3 cut(s)	305, 327, 648
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	3 cut(s)	303, 325, 646
MboII	GAAGA	4 cut(s)	233, 595, 648, 672
MflI	RGATCY	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	209, 232, 597
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	125, 506
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	39, 148, 202, 332, 624, 625, 699
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	299, 435
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	3 cut(s)	553, 608, 737
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	3 cut(s)	303, 325, 646
NlaIII	CATG	1 cut(s)	509
NlaIV	GGNNCC	3 cut(s)	174, 424, 612
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	186
PctI	GAATGC	3 cut(s)	553, 608, 737
PfeI	GAWTC	3 cut(s)	183, 243, 677
PkrI	GCNGC	3 cut(s)	160, 445, 667
PleI	GAGTC	2 cut(s)	125, 506
PpsI	GAGTC	2 cut(s)	125, 506
Ppu21I	YACGTR	1 cut(s)	671
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	174, 424, 612
PspPI	GGNCC	4 cut(s)	48, 173, 422, 611
PspPPI	RGGWCCY	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	4 cut(s)	344, 489, 590, 673
RsaNI	GTAC	4 cut(s)	343, 488, 589, 672
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	299, 435
SatI	GCNGC	3 cut(s)	159, 444, 666
Sau3AI	GATC	3 cut(s)	303, 325, 646
Sau96I	GGNCC	4 cut(s)	48, 173, 422, 611
SchI	GAGTC	2 cut(s)	125, 506
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	2 cut(s)	541, 613
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	3 cut(s)	48, 173, 422
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	209, 232, 597
SsiI	CCGC	2 cut(s)	159, 420
SspMI	CTAG	2 cut(s)	162, 576
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	2 cut(s)	360, 673
TaqI	TCGA	2 cut(s)	186, 324
TasI	AATT	3 cut(s)	209, 232, 597
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	183, 243, 677
Tru1I	TTAA	2 cut(s)	299, 435
Tru9I	TTAA	2 cut(s)	299, 435
TscAI	CASTG	2 cut(s)	48, 278
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	443, 665
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	48, 278
VpaK11BI	GGWCC	3 cut(s)	48, 173, 422
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	2 cut(s)	162, 576
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.