Rh6BG010500

Protein STAY-GREEN LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009103
Physical Location & Seq
Forward (+)
1609207 .. 1611782
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG010500.1

Sequence Viewer

Length: 675 bp
ATGGCCTGTCATTGTGCTTATCATTCATTTCCACCATCACCATTGAGGAGCTTCAGCAACAACAACAACAACAAGACCAGTCTTCTTCTTGCTTCATCAAAAAGACCCAATTCTCTTTTGCTTTCTGCCATCAGCCACAATAGAGAATCTTACAGTACCTTTGTTTCTGAGGCTGCTAGGCTTTTGGGTCCAGCAAGATTTGACGCTTCAAAGCTAAAGGTTGAGTTTATTGGAGAAGAGATGAACAACTATGTCGGAATCATCCCAAGAACTTACATCCTATCTCATTGTGACTTCACAGCTAACTTGACCTTAACCATCTCCAATGTCATCAACCTTGAACAGTTAAAAGGATGGTACAGCAAGGATGATGTTGTTGCAGAGTGGAAAAGGGTGAATGGTGAAATGTGTCTGCATATCCATTGCTATGTGAGCGGTCCCAACCTCTTGCTAGACCTGGCAGCAGAGTTCAGATATCACATATTTTCCAAAGAAATGCCTTTGGTACTGAAAGCTGTGCTACATGGAGACTCACCACTTTTCGGAGAGCATCCAGAGCTACTTGATGCTTTGGTTCGGGTTTATTTTCATTCTAGTTTGAAGAAGTACAATAGAATTGAATGCTGGGGGCCTCTCAAGGATGCTGTAGAGGTAAAACAAAGCCTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko00860 ko01110 map00860 map01110
Pfam Domains
Protein Families
Staygreen

Protein Analysis

224

Amino Acids

25.39

Weight (kDa)

7.68

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Staygreen PF12638 66 - 215 7.3e-59 Staygreen protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 435
AciI CCGC 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 4 cut(s) 157, 359, 507, 608
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 210, 341, 601, 620
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 5 cut(s) 51, 214, 302, 515, 559
AluI AGCT 5 cut(s) 51, 214, 302, 515, 559
Alw26I GTCTC 1 cut(s) 522
AoxI GGCC 2 cut(s) 3, 629
ApeKI GCWGC 2 cut(s) 173, 461
AspS9I GGNCC 3 cut(s) 188, 437, 629
AsuHPI GGTGA 4 cut(s) 30, 406, 413, 525
AvaII GGWCC 2 cut(s) 188, 437
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 160, 473
BccI CCATC 4 cut(s) 43, 137, 326, 348
BciT130I CCWGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 3 cut(s) 177, 452, 594
BfmI CTRYAG 1 cut(s) 645
BisI GCNGC 2 cut(s) 174, 462
BlsI GCNGC 2 cut(s) 175, 463
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 2 cut(s) 188, 437
BmgT120I GGNCC 3 cut(s) 188, 437, 629
BmiI GGNNCC 3 cut(s) 189, 439, 630
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 3 cut(s) 556, 559, 631
BpiI GAAGAC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 458
BseGI GGATG 6 cut(s) 261, 276, 359, 373, 550, 646
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 160, 473
BseYI CCCAGC 1 cut(s) 624
BshFI GGCC 2 cut(s) 5, 631
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 5, 631
BspACI CCGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 5, 631
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 189, 439, 630
BsrBI CCGCTC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 155, 345
Bst6I CTCTTC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 6 cut(s) 261, 276, 359, 373, 550, 646
BstMAI GTCTC 1 cut(s) 522
BstMWI GCNNNNNNNGC 2 cut(s) 432, 556
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 160, 473
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 5, 631
BtsCI GGATG 6 cut(s) 261, 276, 359, 373, 550, 646
Cfr13I GGNCC 3 cut(s) 188, 437, 629
CseI GACGC 1 cut(s) 212
Csp6I GTAC 4 cut(s) 156, 358, 506, 607
CviAII CATG 1 cut(s) 524
CviQI GTAC 4 cut(s) 156, 358, 506, 607
DdeI CTNAG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 188, 437
Eco57I CTGAAG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 1 cut(s) 476
FaeI CATG 1 cut(s) 527
FaiI YATR 7 cut(s) 252, 417, 429, 482, 525, 671, 673
FaqI GGGAC 1 cut(s) 423
FatI CATG 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 174, 462
FokI GGATG 6 cut(s) 248, 263, 366, 380, 537, 653
Fsp4HI GCNGC 2 cut(s) 174, 462
FspBI CTAG 3 cut(s) 177, 452, 594
GluI GCNGC 2 cut(s) 174, 462
GsaI CCCAGC 1 cut(s) 628
HaeIII GGCC 2 cut(s) 5, 631
HgaI GACGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 527
HinfI GANTC 3 cut(s) 146, 258, 530
HphI GGTGA 4 cut(s) 30, 406, 413, 525
Hpy188I TCNGA 4 cut(s) 169, 257, 473, 545
Hpy188III TCNNGA 1 cut(s) 554
HpyCH4III ACNGT 2 cut(s) 155, 345
HpyCH4V TGCA 2 cut(s) 380, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 556
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 527
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 7 cut(s) 19, 91, 204, 443, 470, 567, 610
Lsp1109I GCAGC 2 cut(s) 160, 473
LweI GCATC 3 cut(s) 556, 559, 631
MaeI CTAG 3 cut(s) 177, 452, 594
MaeIII GTNAC 1 cut(s) 290
MbiI CCGCTC 1 cut(s) 435
MboII GAAGA 4 cut(s) 74, 77, 248, 613
MluCI AATT 2 cut(s) 109, 615
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 5 cut(s) 39, 163, 455, 642, 643
MseI TTAA 2 cut(s) 314, 347
MslI CAYNNNNRTG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 432, 556
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 3 cut(s) 189, 439, 630
NmuCI GTSAC 1 cut(s) 290
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 146, 258
PkrI GCNGC 2 cut(s) 175, 463
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 189, 439, 630
PspPI GGNCC 3 cut(s) 188, 437, 629
RsaI GTAC 4 cut(s) 157, 359, 507, 608
RsaNI GTAC 4 cut(s) 156, 358, 506, 607
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 2 cut(s) 314, 347
SatI GCNGC 2 cut(s) 174, 462
Sau96I GGNCC 3 cut(s) 188, 437, 629
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 458
SfaNI GCATC 3 cut(s) 556, 559, 631
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 2 cut(s) 188, 437
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 2 cut(s) 109, 615
SsiI CCGC 1 cut(s) 435
SspMI CTAG 3 cut(s) 177, 452, 594
StyD4I CCNGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 155, 345
TasI AATT 2 cut(s) 109, 615
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 2 cut(s) 146, 258
Tru1I TTAA 2 cut(s) 314, 347
Tru9I TTAA 2 cut(s) 314, 347
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 173, 461
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 15, 84, 257, 578, 658
VpaK11BI GGWCC 2 cut(s) 188, 437
XspI CTAG 3 cut(s) 177, 452, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.