Rh6DG010100

Protein STAY-GREEN LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009103
Physical Location & Seq
Forward (+)
1021656 .. 1023622
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG010100.1

Sequence Viewer

Length: 771 bp
ATGGCCTGTCATTGTGCTTATCATTCATTTCCACCATCACCATTGAGGAGCTTCAGCAACAACAACAACAACAACAAGACCAGTCTTCTTCTTGCTTCATCAAAAAGACCCAATTCTCTTTTGCTTTCTGCCATCAGCCACAATAGAGAATCTTACAGTACCTTTGTTTCTGAGGCTGCTAGGCTTTTGGGTCCAGCAAGATTTGACGCTTCAAAGCTAAAGGTTGAGTTTATTGGAGAAGAGATGAACAACTATGTCGGAATCATCCCAAGAACTTACATCCTATCTCATTGTGACTTCACAGCTAACTTGACCTTAACCATCTCCAATGTCATCAACCTTGAACAGTTAAAAGGATGGTACAGCAAGGATGATGTTGTTGCAGAGTGGAAAAGGGTGAATCATGAAATGTGTCTGCATATCCATTGCTATGTGAGCGGTCCCAATCTCTTGCTAGACCTGGCAGCAGAGTTCAGATATCACATATTTTCCAAAGAAATGCCTTTGGTACTGAAAGCTGTGCTACATGGAGACTCACCACTTTTCAGAGAGCATCCAGAGCTACTTGATTCTTTGGTTCGGGTTTATTTTCATTCTAGTTTGAAGAAGTACAATAGAATTGAATGCTGGGGGCCTCTCAAGGATGCTGTAGAGGAAAGACCAAGGGATCGTACTCAAGGAGTAACTGCATCTATTGATCCCCCTCGTCCTCCAGACAAGTGGGCAAGGCCAAAAACCTTATTTCAAGTTCTATTTGCGTTCCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko00860 ko01110 map00860 map01110
Pfam Domains
Protein Families
Staygreen

Protein Analysis

256

Amino Acids

29.28

Weight (kDa)

8.69

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Staygreen PF12638 67 - 216 4.3e-59 Staygreen protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 1 cut(s) 438
AclWI GGATC 2 cut(s) 675, 692
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 5 cut(s) 160, 362, 510, 611, 673
AgsI TTSAA 5 cut(s) 213, 344, 604, 623, 746
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 5 cut(s) 51, 217, 305, 518, 562
AluI AGCT 5 cut(s) 51, 217, 305, 518, 562
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 2 cut(s) 675, 692
AoxI GGCC 3 cut(s) 3, 632, 728
ApeKI GCWGC 2 cut(s) 176, 464
AspS9I GGNCC 3 cut(s) 191, 440, 632
AsuHPI GGTGA 3 cut(s) 30, 409, 528
AvaII GGWCC 2 cut(s) 191, 440
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 163, 476
BccI CCATC 4 cut(s) 43, 140, 329, 351
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 3 cut(s) 180, 455, 597
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 2 cut(s) 177, 465
BlsI GCNGC 2 cut(s) 178, 466
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 2 cut(s) 191, 440
BmgT120I GGNCC 3 cut(s) 191, 440, 632
BmiI GGNNCC 3 cut(s) 192, 442, 633
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 562, 634, 698
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 623, 660
BsaJI CCNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 6 cut(s) 264, 279, 362, 376, 553, 649
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 163, 476
BseYI CCCAGC 1 cut(s) 627
BshFI GGCC 3 cut(s) 5, 634, 730
BslFI GGGAC 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 3 cut(s) 5, 634, 730
Bsp143I GATC 2 cut(s) 667, 697
BspACI CCGC 1 cut(s) 438
BspANI GGCC 3 cut(s) 5, 634, 730
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 192, 442, 633
BspPI GGATC 2 cut(s) 675, 692
BsrBI CCGCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 424
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 2 cut(s) 667, 697
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 158, 348
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 6 cut(s) 264, 279, 362, 376, 553, 649
BstKTI GATC 2 cut(s) 670, 700
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 2 cut(s) 667, 697
BstMWI GCNNNNNNNGC 2 cut(s) 435, 559
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 163, 476
BstV2I GAAGAC 1 cut(s) 77
BstXI CCANNNNNNTGG 1 cut(s) 720
BsuRI GGCC 3 cut(s) 5, 634, 730
BtsCI GGATG 6 cut(s) 264, 279, 362, 376, 553, 649
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 191, 440, 632
CseI GACGC 1 cut(s) 215
Csp6I GTAC 5 cut(s) 159, 361, 509, 610, 672
CviAII CATG 2 cut(s) 404, 527
CviQI GTAC 5 cut(s) 159, 361, 509, 610, 672
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 669, 699
DpnII GATC 2 cut(s) 667, 697
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 662
Eco32I GATATC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 191, 440
Eco57I CTGAAG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 2 cut(s) 407, 530
FaiI YATR 6 cut(s) 255, 405, 420, 432, 485, 528
FaqI GGGAC 1 cut(s) 426
FatI CATG 2 cut(s) 403, 526
Fnu4HI GCNGC 2 cut(s) 177, 465
FokI GGATG 6 cut(s) 251, 266, 369, 383, 540, 656
Fsp4HI GCNGC 2 cut(s) 177, 465
FspBI CTAG 3 cut(s) 180, 455, 597
GluI GCNGC 2 cut(s) 177, 465
GsaI CCCAGC 1 cut(s) 631
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 3 cut(s) 5, 634, 730
HgaI GACGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 407, 530
HinfI GANTC 5 cut(s) 149, 261, 400, 533, 569
HphI GGTGA 3 cut(s) 30, 409, 528
Hpy188I TCNGA 4 cut(s) 172, 260, 476, 548
Hpy188III TCNNGA 3 cut(s) 404, 557, 713
HpyCH4III ACNGT 2 cut(s) 158, 348
HpyCH4V TGCA 3 cut(s) 383, 418, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 559
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 407, 530
Kzo9I GATC 2 cut(s) 667, 697
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 8 cut(s) 19, 94, 207, 446, 473, 570, 613, 726
Lsp1109I GCAGC 2 cut(s) 163, 476
LweI GCATC 3 cut(s) 562, 634, 698
MaeI CTAG 3 cut(s) 180, 455, 597
MaeIII GTNAC 2 cut(s) 293, 682
MalI GATC 2 cut(s) 669, 699
MbiI CCGCTC 1 cut(s) 438
MboI GATC 2 cut(s) 667, 697
MboII GAAGA 4 cut(s) 77, 80, 251, 616
MluCI AATT 2 cut(s) 112, 618
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 6 cut(s) 39, 166, 645, 646, 714, 720
MseI TTAA 2 cut(s) 317, 350
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 435, 559
NdeII GATC 2 cut(s) 667, 697
NlaIII CATG 2 cut(s) 407, 530
NlaIV GGNNCC 3 cut(s) 192, 442, 633
NmuCI GTSAC 1 cut(s) 293
PagI TCATGA 1 cut(s) 403
PctI GAATGC 1 cut(s) 629
PfeI GAWTC 4 cut(s) 149, 261, 400, 569
PkrI GCNGC 2 cut(s) 178, 466
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 627
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 3 cut(s) 192, 442, 633
PspPI GGNCC 3 cut(s) 191, 440, 632
RsaI GTAC 5 cut(s) 160, 362, 510, 611, 673
RsaNI GTAC 5 cut(s) 159, 361, 509, 610, 672
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 317, 350
SatI GCNGC 2 cut(s) 177, 465
Sau3AI GATC 2 cut(s) 667, 697
Sau96I GGNCC 3 cut(s) 191, 440, 632
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 461
SfaNI GCATC 3 cut(s) 562, 634, 698
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 2 cut(s) 191, 440
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 638, 675
SmoI CTYRAG 2 cut(s) 638, 675
Sse9I AATT 2 cut(s) 112, 618
SsiI CCGC 1 cut(s) 438
SspMI CTAG 3 cut(s) 180, 455, 597
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 2 cut(s) 158, 348
TasI AATT 2 cut(s) 112, 618
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 4 cut(s) 149, 261, 400, 569
Tru1I TTAA 2 cut(s) 317, 350
Tru9I TTAA 2 cut(s) 317, 350
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 176, 464
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 15, 87, 260, 420, 581
VpaK11BI GGWCC 2 cut(s) 191, 440
XspI CTAG 3 cut(s) 180, 455, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.