Rh6CG009100

Protein STAY-GREEN LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009103
Physical Location & Seq
Forward (+)
1101779 .. 1104436
2658 bp
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UTR
Exon/CDS
Intron
Rh6CG009100.1

Sequence Viewer

Length: 624 bp
ATGCTTACATGTTCTTATAATTGGCAGGCTGCTAGGCTTTTGGGTCCAGCAAGATTTGACGCTTCAAAGCTAAAGGTTGAGTTTATTGGAGAAGAGATGAACAACTATGTCGGAATCATCCCAAGAACTTACATCCTATCTCATTGTGACTTCACAGCTAACTTGACCTTAACCATCTCCAATGTCATCAACCTTGAACAGTTAAAAGGATGGTACAGCAAGGATGATGTTGTTGCAGAGTGGAAAAGGGTGAATCATGAAATGTGTCTGCATATCCATTGCTATGTGAGCGGTCCCAATCTCTTGCTAGACCTGGCAGCAGAGTTCAGATATCACATATTTTCCAAAGAAATGCCTTTGGTACTGAAAGCTGTGCTACATGGAGACTCACCACTTTTCAGAGAGCATCCAGAGCTACTTGATTCTTTGGTTCGGGTTTATTTTCATTCTAGTTTGAAGAAGTACAATAGAATTGAATGCTGGGGGCCTCTCAAGGATGCTGTAGAGGAAAGACCAAGGGATCGTACTCAAGGAGTAACTGCATCTATTGATCCCCCTCGTCCTCCAGACAAGTGGGCAAGGCCAAAAACCTTATTTCAAGTTCTATTTGCGTTCCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko00860 ko01110 map00860 map01110
Pfam Domains
Protein Families
Staygreen

Protein Analysis

207

Amino Acids

23.99

Weight (kDa)

7.69

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Staygreen PF12638 18 - 167 2.3e-59 Staygreen protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 291
AciI CCGC 1 cut(s) 291
AclWI GGATC 2 cut(s) 528, 545
AfaI GTAC 4 cut(s) 215, 363, 464, 526
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 5 cut(s) 66, 197, 457, 476, 599
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 4 cut(s) 70, 158, 371, 415
AluI AGCT 4 cut(s) 70, 158, 371, 415
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 528, 545
AoxI GGCC 2 cut(s) 485, 581
ApeKI GCWGC 2 cut(s) 29, 317
AspS9I GGNCC 3 cut(s) 44, 293, 485
AsuHPI GGTGA 2 cut(s) 262, 381
AvaII GGWCC 2 cut(s) 44, 293
BbvI GCAGC 2 cut(s) 16, 329
BccI CCATC 2 cut(s) 182, 204
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 3 cut(s) 33, 308, 450
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 2 cut(s) 30, 318
BlsI GCNGC 2 cut(s) 31, 319
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 2 cut(s) 44, 293
BmgT120I GGNCC 3 cut(s) 44, 293, 485
BmiI GGNNCC 3 cut(s) 45, 295, 486
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 415, 487, 551
BpmI CTGGAG 1 cut(s) 549
BpuEI CTTGAG 2 cut(s) 476, 513
BsaJI CCNNGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 6 cut(s) 117, 132, 215, 229, 406, 502
BseMI GCAATG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 16, 329
BseYI CCCAGC 1 cut(s) 480
BshFI GGCC 2 cut(s) 487, 583
BslFI GGGAC 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 2 cut(s) 487, 583
Bsp143I GATC 2 cut(s) 520, 550
BspACI CCGC 1 cut(s) 291
BspANI GGCC 2 cut(s) 487, 583
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 45, 295, 486
BspPI GGATC 2 cut(s) 528, 545
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 2 cut(s) 520, 550
BssT1I CCWWGG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 6 cut(s) 117, 132, 215, 229, 406, 502
BstKTI GATC 2 cut(s) 523, 553
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 520, 550
BstMWI GCNNNNNNNGC 2 cut(s) 288, 412
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 16, 329
BstXI CCANNNNNNTGG 1 cut(s) 573
BsuRI GGCC 2 cut(s) 487, 583
BtsCI GGATG 6 cut(s) 117, 132, 215, 229, 406, 502
Cac8I GCNNGC 1 cut(s) 27
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 44, 293, 485
CseI GACGC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 214, 362, 463, 525
CviAII CATG 3 cut(s) 9, 257, 380
CviJI RGCY 8 cut(s) 29, 37, 70, 158, 371, 415, 487, 583
CviKI_1 RGCY 8 cut(s) 29, 37, 70, 158, 371, 415, 487, 583
CviQI GTAC 4 cut(s) 214, 362, 463, 525
DpnI GATC 2 cut(s) 522, 552
DpnII GATC 2 cut(s) 520, 550
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 515
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 44, 293
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 3 cut(s) 12, 260, 383
FaiI YATR 8 cut(s) 10, 18, 108, 258, 273, 285, 338, 381
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 8, 256, 379
Fnu4HI GCNGC 2 cut(s) 30, 318
FokI GGATG 6 cut(s) 104, 119, 222, 236, 393, 509
Fsp4HI GCNGC 2 cut(s) 30, 318
FspBI CTAG 3 cut(s) 33, 308, 450
GluI GCNGC 2 cut(s) 30, 318
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 487, 583
HgaI GACGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 12, 260, 383
HinfI GANTC 4 cut(s) 114, 253, 386, 422
HphI GGTGA 2 cut(s) 262, 381
Hpy188I TCNGA 3 cut(s) 113, 329, 401
Hpy188III TCNNGA 3 cut(s) 257, 410, 566
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 236, 271, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 412
Hsp92II CATG 3 cut(s) 12, 260, 383
Kzo9I GATC 2 cut(s) 520, 550
LpnPI CCDG 7 cut(s) 11, 60, 299, 326, 423, 466, 579
Lsp1109I GCAGC 2 cut(s) 16, 329
LweI GCATC 3 cut(s) 415, 487, 551
MaeI CTAG 3 cut(s) 33, 308, 450
MaeIII GTNAC 2 cut(s) 146, 535
MalI GATC 2 cut(s) 522, 552
MbiI CCGCTC 1 cut(s) 291
MboI GATC 2 cut(s) 520, 550
MboII GAAGA 2 cut(s) 104, 469
MluCI AATT 2 cut(s) 19, 471
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 4 cut(s) 498, 499, 567, 573
MseI TTAA 2 cut(s) 170, 203
MslI CAYNNNNRTG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 288, 412
NdeII GATC 2 cut(s) 520, 550
NlaIII CATG 3 cut(s) 12, 260, 383
NlaIV GGNNCC 3 cut(s) 45, 295, 486
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 12
PagI TCATGA 1 cut(s) 256
PciI ACATGT 1 cut(s) 8
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 114, 253, 422
PkrI GCNGC 2 cut(s) 31, 319
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PscI ACATGT 1 cut(s) 8
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 45, 295, 486
PspPI GGNCC 3 cut(s) 44, 293, 485
RsaI GTAC 4 cut(s) 215, 363, 464, 526
RsaNI GTAC 4 cut(s) 214, 362, 463, 525
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 170, 203
SatI GCNGC 2 cut(s) 30, 318
Sau3AI GATC 2 cut(s) 520, 550
Sau96I GGNCC 3 cut(s) 44, 293, 485
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 314
SetI ASST 9 cut(s) 72, 78, 160, 170, 195, 315, 373, 417, 593
SfaNI GCATC 3 cut(s) 415, 487, 551
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 44, 293
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 2 cut(s) 491, 528
SmoI CTYRAG 2 cut(s) 491, 528
Sse9I AATT 2 cut(s) 19, 471
SsiI CCGC 1 cut(s) 291
SspMI CTAG 3 cut(s) 33, 308, 450
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 201
TasI AATT 2 cut(s) 19, 471
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 3 cut(s) 114, 253, 422
Tru1I TTAA 2 cut(s) 170, 203
Tru9I TTAA 2 cut(s) 170, 203
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 29, 317
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 113, 273, 434
VpaK11BI GGWCC 2 cut(s) 44, 293
XceI RCATGY 1 cut(s) 12
XspI CTAG 3 cut(s) 33, 308, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.