Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

17169436 .. 17171472

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGCTTGGCTTCGATTCCCTCGTCGTCACCAGTGGCTTCACCGTACTTCCGCTGCCGTACTTACATCTTCTCCTTCTCTTCCTCACCTCTCTGTTTATATTTCCCGCGCGGTGACTCTACTTCTCTCAGGCCACGAGTTCGCGCCTTGCGAACGGAATCTGACGGTGCTAAAATCGGTAACTCGGAGTCTTACGGCTCCGAATTGCTTCGTCGGCCTCGTATTGCGTCGGAGGAAAGCTCCGAAGAAGAGGAGGAAGAGGAAGAAGAGAACAGCGAAGGTGATGAGTTCGTCGATTGGGAAGATAAAATCCTTGAGGTTACTGTTCCTCTTGTTGGCTTCGTCAGAATGATTCTTCACTCCGGAAAATATGCAAACCGAGATAGGCTAAGCCCCGAGCATGAGAGAACAATTATTGAGATGCTACTTCCTTATCATCCTGAATGTGAGAAGAAGATCGGATGTGGTATAGACTATATTATGGTAGGGCATCACCCGGATTTTGAGAGCTCTCGATGTATGTTTATAGTTCGAAAAGATGGAGAAGTAGTCGACTTTTCGTATTGGAAATGCATAAAAGGTCTTATAAAAAAGAAGTATCCTCTGTATGCAGACAGTTTCATCCTCAGACATTTTCGCAAACGTAGGCAGAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

219

Amino Acids

25.45

Weight (kDa)

6.12

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	116 - 192	1.6e-29	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	3 cut(s)	109, 111, 144
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	3 cut(s)	52, 107, 111
AfaI	GTAC	2 cut(s)	47, 61
AfiI	CCNNNNNNNGG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	6, 240, 510
AluI	AGCT	3 cut(s)	6, 240, 510
Alw21I	GWGCWC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	2 cut(s)	131, 215
ApeKI	GCWGC	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	111, 146
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	6 cut(s)	21, 33, 78, 125, 293, 485
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	512
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	2 cut(s)	42, 211
BciVI	GTATCC	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	411, 499
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu1102I	GCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	497
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	362
BseGI	GGATG	3 cut(s)	436, 467, 621
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	142, 640
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	3 cut(s)	109, 111, 144
BshFI	GGCC	2 cut(s)	133, 217
BsiHKAI	GWGCWC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	363, 497
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	2 cut(s)	133, 217
BsoBI	CYCGRG	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	456
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	3 cut(s)	52, 107, 111
BspANI	GGCC	2 cut(s)	133, 217
BspCNI	CTCAG	2 cut(s)	141, 639
BspEI	TCCGGA	1 cut(s)	362
BspFNI	CGCG	3 cut(s)	109, 111, 144
BspLI	GGNNCC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	45, 167, 325, 617
Bst6I	CTCTTC	4 cut(s)	85, 243, 252, 261
BstBI	TTCGAA	1 cut(s)	532
BstDEI	CTNAG	3 cut(s)	128, 389, 626
BstF5I	GGATG	3 cut(s)	436, 467, 621
BstFNI	CGCG	3 cut(s)	109, 111, 144
BstHHI	GCGC	2 cut(s)	111, 146
BstKTI	GATC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	495
BstUI	CGCG	3 cut(s)	109, 111, 144
BstV1I	GCAGC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	133, 217
BtsCI	GGATG	3 cut(s)	436, 467, 621
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	2 cut(s)	111, 146
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	46, 60
CviAII	CATG	1 cut(s)	401
CviQI	GTAC	2 cut(s)	46, 60
DdeI	CTNAG	3 cut(s)	128, 389, 626
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
Eam1104I	CTCTTC	4 cut(s)	85, 243, 252, 261
EarI	CTCTTC	4 cut(s)	85, 243, 252, 261
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	512
FaeI	CATG	1 cut(s)	404
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	3 cut(s)	423, 474, 608
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	55
GlaI	GCGC	2 cut(s)	110, 145
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	133, 217
HapII	CCGG	2 cut(s)	363, 497
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	111, 146
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	2 cut(s)	109, 144
HinP1I	GCGC	2 cut(s)	109, 144
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	5 cut(s)	16, 116, 158, 188, 352
HpaII	CCGG	2 cut(s)	363, 497
HphI	GGTGA	6 cut(s)	21, 33, 78, 125, 293, 485
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	8 cut(s)	163, 187, 202, 232, 244, 347, 461, 629
Hpy188III	TCNNGA	3 cut(s)	363, 440, 513
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	4 cut(s)	28, 216, 232, 296
HpyAV	CCTTC	2 cut(s)	85, 272
HpyCH4III	ACNGT	4 cut(s)	45, 167, 325, 617
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	3 cut(s)	374, 573, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	128, 389, 626
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	2 cut(s)	109, 144
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	203, 245
LpnPI	CCDG	5 cut(s)	45, 115, 376, 453, 510
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	411, 499
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	4 cut(s)	27, 113, 179, 319
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	2 cut(s)	203, 411
MlyI	GAGTC	2 cut(s)	110, 197
MmeI	TCCRAC	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	575
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	2 cut(s)	363, 497
MspR9I	CCNGG	1 cut(s)	497
MvnI	CGCG	3 cut(s)	109, 111, 144
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	27, 113
NsiI	ATGCAT	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 148, 217
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	16, 158, 352
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	110, 196
PpsI	GAGTC	2 cut(s)	110, 196
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	199
RsaI	GTAC	2 cut(s)	47, 61
RsaNI	GTAC	2 cut(s)	46, 60
SacI	GAGCTC	1 cut(s)	512
SalI	GTCGAC	1 cut(s)	551
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	456
SchI	GAGTC	2 cut(s)	110, 197
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	512
SetI	ASST	8 cut(s)	8, 91, 242, 283, 321, 512, 583, 646
SfaNI	GCATC	2 cut(s)	411, 499
SfuI	TTCGAA	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	203, 411
SsiI	CCGC	3 cut(s)	52, 107, 111
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	45, 167, 325, 617
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	5 cut(s)	14, 294, 514, 532, 552
TasI	AATT	2 cut(s)	203, 411
TfiI	GAWTC	3 cut(s)	16, 158, 352
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	27, 113
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	2 cut(s)	27, 113
TspDTI	ATGAA	1 cut(s)	610
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.