Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

51115285 .. 51118383

Gene Structure 3099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGTACGTCGAGCGAGGCGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACGGACTTCTTCTGGGCCATCGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATCTGGTGCTAGCAAAAAATGGGATGGCGGGGGCCCCGGAGGGCCTGGAGGGGGACCGTATGGTGGTGGTCCGCGTGGCCCACCTCGTGGACTTGACAATGTTCGTGGCATCGACCATAGTTCCTTACCTGCCTGCGGTTCCTGCTGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

101

Amino Acids

10.64

Weight (kDa)

9.72

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelK_SelG	PF10961	2 - 80	8.5e-23	Selenoprotein SelK_SelG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	180, 224, 288
AclWI	GGATC	2 cut(s)	33, 160
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	203, 215, 239, 287
AjnI	CCWGG	1 cut(s)	196
AlwI	GGATC	2 cut(s)	33, 160
AoxI	GGCC	4 cut(s)	78, 184, 194, 229
ApaI	GGGCCC	1 cut(s)	188
AspS9I	GGNCC	7 cut(s)	78, 184, 185, 194, 206, 221, 230
AsuC2I	CCSGG	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	206, 221
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	237
BccI	CCATC	3 cut(s)	89, 118, 170
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	189, 198
Bme18I	GGWCC	2 cut(s)	206, 221
BmgT120I	GGNCC	7 cut(s)	78, 184, 185, 194, 206, 221, 230
BmiI	GGNNCC	5 cut(s)	185, 186, 187, 207, 292
BmrFI	CCNGG	2 cut(s)	189, 198
BmsI	GCATC	2 cut(s)	127, 270
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 215, 239, 287
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	142, 181
BseLI	CCNNNNNNNGG	4 cut(s)	203, 215, 239, 287
BseSI	GKGCMC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	4 cut(s)	80, 186, 196, 231
BsiSI	CCGG	1 cut(s)	189
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	4 cut(s)	203, 215, 239, 287
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	4 cut(s)	80, 186, 196, 231
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	38, 152
BspACI	CCGC	3 cut(s)	180, 224, 288
BspANI	GGCC	4 cut(s)	80, 186, 196, 231
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	5 cut(s)	185, 186, 187, 207, 292
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	33, 160
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	38, 152
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	163, 286
BstF5I	GGATG	2 cut(s)	142, 181
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	41, 155
BstMBI	GATC	2 cut(s)	38, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	187, 196
BstSLI	GKGCMC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	80, 186, 196, 231
BtsCI	GGATG	2 cut(s)	142, 181
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	163, 286
Cfr13I	GGNCC	7 cut(s)	78, 184, 185, 194, 206, 221, 230
Csp6I	GTAC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviJI	RGCY	4 cut(s)	80, 186, 196, 231
CviKI_1	RGCY	4 cut(s)	80, 186, 196, 231
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	2 cut(s)	40, 154
DpnII	GATC	2 cut(s)	38, 152
DraIII	CACNNNGTG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	206, 221
EcoO109I	RGGNCCY	3 cut(s)	184, 185, 194
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	188
FaiI	YATR	2 cut(s)	213, 270
FaqI	GGGAC	1 cut(s)	219
FauI	CCCGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	149, 188
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	80, 186, 196, 231
HapII	CCGG	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	88, 242
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	55, 121
Hpy8I	GTNNAC	2 cut(s)	88, 242
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	38, 152
LpnPI	CCDG	7 cut(s)	61, 141, 183, 202, 210, 294, 298
LweI	GCATC	2 cut(s)	127, 270
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	9
MalI	GATC	2 cut(s)	40, 154
MboI	GATC	2 cut(s)	38, 152
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	11, 185, 194, 246
MseI	TTAA	1 cut(s)	304
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	189, 198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	38, 152
NheI	GCTAGC	1 cut(s)	161
NlaIV	GGNNCC	5 cut(s)	185, 186, 187, 207, 292
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
Pfl23II	CGTACG	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	239
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	5 cut(s)	185, 186, 187, 207, 292
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	7 cut(s)	78, 184, 185, 194, 206, 221, 230
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	38, 152
Sau96I	GGNCC	7 cut(s)	78, 184, 185, 194, 206, 221, 230
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	189, 198
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	12, 238, 283
SfaNI	GCATC	2 cut(s)	127, 270
SinI	GGWCC	2 cut(s)	206, 221
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	3 cut(s)	180, 224, 288
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	187, 196
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	12, 122, 264
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	206, 221
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.