Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

25538630 .. 25540580

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCTCTCTCTCCAAACCACCGCTGCTCGTCCACAACCACCTCACCTCCTCCTCCCACGCTCTGATTGGTCCAGCAACTCTATCCTTCTCCAAAACGACGTCGTTGCTCCGCGCCCGCCTCTGCGCGCTGAAGACCGGGGCCGGGCGGCAGGAGTCGGACGGGCCGGAGCTGCTGCGGAAGCCGGTGGTGAAGGACTTGGATGGGAATTCGGAGGAAGACGAGGGAGAGGATGGGAAATGGGTTGATTGGGAGGATAAGATTCTAGAAGATACTGTTCCGTTGGTTGGGTTTGTGAGGATGATTCTTCATTCTGGAAAGTACGAGAGTGGGGATAGGTTGAGTCCTGAGCATCAGAAGACTGTTCTTGAGAGGTTGCTTCCTTTTCATCCTGAGGCTGCCAAGAAAATCGGCTGCGGTATTGATTACGTCACGGTTGGTTACCATCCGGATTTTGAAAGCTCAAGATGTTTGTTCATCGTTCAAAAAGATGGCACATTGGTCGACTTTTCATATTGGAAATGCATAAAGGGACTGATCAGGAAGAACTACCCCTTGTATGCTGACAGCTTCATTCTAAGACATTTCCGAAAGCGTAGACGTGGCGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

8.61

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	100 - 176	2.2e-30	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	504, 598
AccII	CGCG	2 cut(s)	114, 128
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	7 cut(s)	23, 112, 118, 148, 178, 417, 606
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	144, 287
AgsI	TTSAA	2 cut(s)	458, 485
AjiI	CACGTC	1 cut(s)	602
AluBI	AGCT	3 cut(s)	172, 462, 570
AluI	AGCT	3 cut(s)	172, 462, 570
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	3 cut(s)	3, 141, 164
ApeKI	GCWGC	5 cut(s)	25, 172, 175, 398, 414
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	116, 128, 130
AspS9I	GGNCC	3 cut(s)	71, 141, 164
AsuC2I	CCSGG	2 cut(s)	139, 145
AsuHPI	GGTGA	2 cut(s)	37, 202
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	393
BbsI	GAAGAC	3 cut(s)	140, 225, 365
BbvI	GCAGC	5 cut(s)	12, 159, 162, 385, 401
BccI	CCATC	4 cut(s)	197, 227, 453, 485
BcgI	CGANNNNNNTGC	4 cut(s)	88, 122, 484, 518
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	139, 145
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	6 cut(s)	26, 149, 173, 176, 399, 415
BlsI	GCNGC	6 cut(s)	27, 150, 174, 177, 400, 416
Bme1390I	CCNGG	2 cut(s)	139, 145
Bme18I	GGWCC	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	3 cut(s)	71, 141, 164
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	139, 145
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	3 cut(s)	140, 225, 365
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	389, 448
BpuMI	CCSGG	2 cut(s)	139, 145
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 287
Bse118I	RCCGGY	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	5 cut(s)	208, 238, 306, 388, 445
BseLI	CCNNNNNNNGG	2 cut(s)	144, 287
BseMII	CTCAG	2 cut(s)	339, 384
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	40, 43
BseXI	GCAGC	5 cut(s)	12, 159, 162, 385, 401
Bsh1236I	CGCG	2 cut(s)	114, 128
BshFI	GGCC	3 cut(s)	5, 143, 166
BsiSI	CCGG	5 cut(s)	138, 144, 167, 185, 449
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	144, 287
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	5, 143, 166
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	537
BspACI	CCGC	7 cut(s)	23, 112, 118, 148, 178, 417, 606
BspANI	GGCC	3 cut(s)	5, 143, 166
BspCNI	CTCAG	2 cut(s)	340, 385
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	2 cut(s)	114, 128
BspLI	GGNNCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	138
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	1 cut(s)	537
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	277, 364, 436
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	118, 128
BstDEI	CTNAG	3 cut(s)	348, 393, 578
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	5 cut(s)	208, 238, 306, 388, 445
BstFNI	CGCG	2 cut(s)	114, 128
BstHHI	GCGC	3 cut(s)	116, 128, 130
BstKTI	GATC	1 cut(s)	540
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 181
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	137, 143
BstUI	CGCG	2 cut(s)	114, 128
BstV1I	GCAGC	5 cut(s)	12, 159, 162, 385, 401
BstV2I	GAAGAC	3 cut(s)	140, 225, 365
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	5, 143, 166
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	5 cut(s)	208, 238, 306, 388, 445
Cac8I	GCNNGC	2 cut(s)	118, 128
CfoI	GCGC	3 cut(s)	116, 128, 130
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	71, 141, 164
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	612
CviJI	RGCY	9 cut(s)	5, 143, 166, 172, 184, 398, 414, 462, 570
CviKI_1	RGCY	9 cut(s)	5, 143, 166, 172, 184, 398, 414, 462, 570
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	348, 393, 578
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	393
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	527
FaeI	CATG	1 cut(s)	615
FaiI	YATR	4 cut(s)	514, 527, 561, 613
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	1 cut(s)	611
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	2 cut(s)	504, 598
Fnu4HI	GCNGC	6 cut(s)	26, 149, 173, 176, 399, 415
FokI	GGATG	5 cut(s)	215, 245, 313, 375, 432
Fsp4HI	GCNGC	6 cut(s)	26, 149, 173, 176, 399, 415
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	3 cut(s)	115, 127, 129
GluI	GCNGC	6 cut(s)	26, 149, 173, 176, 399, 415
HaeIII	GGCC	3 cut(s)	5, 143, 166
HapII	CCGG	5 cut(s)	138, 144, 167, 185, 449
HhaI	GCGC	3 cut(s)	116, 128, 130
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	615
Hin6I	GCGC	3 cut(s)	114, 126, 128
HinP1I	GCGC	3 cut(s)	114, 126, 128
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	155, 262, 304, 343
HpaII	CCGG	5 cut(s)	138, 144, 167, 185, 449
HphI	GGTGA	2 cut(s)	37, 202
Hpy166II	GTNNAC	3 cut(s)	34, 505, 599
Hpy188I	TCNGA	5 cut(s)	66, 160, 214, 357, 590
Hpy188III	TCNNGA	8 cut(s)	266, 315, 347, 368, 392, 449, 465, 541
Hpy8I	GTNNAC	3 cut(s)	34, 505, 599
Hpy99I	CGWCG	2 cut(s)	103, 106
HpyAV	CCTTC	2 cut(s)	97, 187
HpyCH4III	ACNGT	3 cut(s)	277, 364, 436
HpyCH4IV	ACGT	3 cut(s)	101, 429, 601
HpyCH4V	TGCA	2 cut(s)	525, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 181
HpyF3I	CTNAG	3 cut(s)	348, 393, 578
HpySE526I	ACGT	3 cut(s)	101, 429, 601
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	615
HspAI	GCGC	3 cut(s)	114, 126, 128
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	114, 169
Lsp1109I	GCAGC	5 cut(s)	12, 159, 162, 385, 401
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	3 cut(s)	101, 429, 601
MaeIII	GTNAC	2 cut(s)	430, 440
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	6 cut(s)	145, 230, 281, 299, 370, 556
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	164, 352
MmeI	TCCRAC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	527
MroI	TCCGGA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	5 cut(s)	138, 144, 167, 185, 449
MspR9I	CCNGG	2 cut(s)	139, 145
MvnI	CGCG	2 cut(s)	114, 128
MwoI	GCNNNNNNNGC	2 cut(s)	172, 181
NciI	CCSGG	2 cut(s)	139, 145
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	1 cut(s)	615
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	527
PauI	GCGCGC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	262, 304
PkrI	GCNGC	6 cut(s)	27, 150, 174, 177, 400, 416
PleI	GAGTC	2 cut(s)	163, 351
PpsI	GAGTC	2 cut(s)	163, 351
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	71, 141, 164
PteI	GCGCGC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	503
SatI	GCNGC	6 cut(s)	26, 149, 173, 176, 399, 415
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	3 cut(s)	71, 141, 164
SchI	GAGTC	2 cut(s)	164, 352
ScrFI	CCNGG	2 cut(s)	139, 145
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	368, 463
SmoI	CTYRAG	2 cut(s)	368, 463
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	7 cut(s)	23, 112, 118, 148, 178, 417, 606
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	137, 143
TaaI	ACNGT	3 cut(s)	277, 364, 436
TaiI	ACGT	3 cut(s)	104, 432, 604
TaqI	TCGA	1 cut(s)	504
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	262, 304
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	25, 172, 175, 398, 414
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	5 cut(s)	299, 377, 466, 501, 562
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	208
XbaI	TCTAGA	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	504, 598
XspI	CTAG	1 cut(s)	266
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.