Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

25545586 .. 25546785

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTCTCTCTCCAAACCACCGCTGCTCGTCCACAACCACCTCACCTCCTCTTCCCACGCTCTGATTGGTCCAGCAACTCTATCCTTCTCCAAAACGACGTCGTTGCTCCGCACCCGCTTATGTGCGCTGAAGACCGGGGCCGGGCGGCAGGAGGCAGACGGGCTGGAGCTGCTGCGGAAGCCGGTGGAAGATGAGGGAGAGGATGGGAAATGGGTTGATTGGGAAGATAAGATTCTAGAAGATACTGTTCCGCTGGTTGGGTTTGTGAGGATGATTCTTCACTCTGGAAAGTATGAGAGTGGGGATAGGTTGAGTCCTGAGCATCAAAAGACTGTTCTTGAGAGGTTGCTACCTTTTCATCCTGAGGTTGCCAAGAAAATCGGCTGCGATATTGATTACGTCACGGTATTGATTACGTCAAGGAACGTTTCTTTCCCTTCAAGTTGTTATTTTGGGCCGGTTCATAAATTTGGTATTGGGGCTGGAAATCTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

167

Amino Acids

18.24

Weight (kDa)

6.65

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	91 - 152	4e-11	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AciI	CCGC	6 cut(s)	23, 112, 118, 148, 178, 254
AclI	AACGTT	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	144, 260
AgsI	TTSAA	1 cut(s)	444
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 141, 458
ApeKI	GCWGC	4 cut(s)	25, 172, 175, 387
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	71, 141, 458
AsuC2I	CCSGG	2 cut(s)	139, 145
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	12, 159, 162, 374
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	2 cut(s)	139, 145
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	5 cut(s)	26, 149, 173, 176, 388
BlsI	GCNGC	5 cut(s)	27, 150, 174, 177, 389
Bme1390I	CCNGG	2 cut(s)	139, 145
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	71, 141, 458
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	139, 145
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	139, 145
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 260
Bse118I	RCCGGY	2 cut(s)	184, 460
Bse21I	CCTNAGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	211, 279, 361
BseLI	CCNNNNNNNGG	2 cut(s)	144, 260
BseMII	CTCAG	2 cut(s)	312, 357
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	12, 159, 162, 374
BshFI	GGCC	3 cut(s)	5, 143, 460
BsiSI	CCGG	4 cut(s)	138, 144, 185, 461
BslI	CCNNNNNNNGG	2 cut(s)	144, 260
BsnI	GGCC	3 cut(s)	5, 143, 460
BspACI	CCGC	6 cut(s)	23, 112, 118, 148, 178, 254
BspANI	GGCC	3 cut(s)	5, 143, 460
BspCNI	CTCAG	2 cut(s)	313, 358
BspLI	GGNNCC	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	184, 460
BssAI	RCCGGY	2 cut(s)	184, 460
BssECI	CCNNGG	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	250, 337, 409
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	321, 366
BstF5I	GGATG	3 cut(s)	211, 279, 361
BstHHI	GCGC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 181
BstSCI	CCNGG	2 cut(s)	137, 143
BstV1I	GCAGC	4 cut(s)	12, 159, 162, 374
BstV2I	GAAGAC	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	5, 143, 460
BtsCI	GGATG	3 cut(s)	211, 279, 361
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	184, 460
Cfr13I	GGNCC	3 cut(s)	71, 141, 458
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	8 cut(s)	5, 143, 166, 172, 184, 387, 460, 485
CviKI_1	RGCY	8 cut(s)	5, 143, 166, 172, 184, 387, 460, 485
DdeI	CTNAG	2 cut(s)	321, 366
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	501
FaiI	YATR	4 cut(s)	124, 297, 468, 499
FatI	CATG	1 cut(s)	497
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	5 cut(s)	26, 149, 173, 176, 388
FokI	GGATG	3 cut(s)	218, 286, 348
Fsp4HI	GCNGC	5 cut(s)	26, 149, 173, 176, 388
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	26, 149, 173, 176, 388
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	5, 143, 460
HapII	CCGG	4 cut(s)	138, 144, 185, 461
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	501
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	235, 277, 316
HpaII	CCGG	4 cut(s)	138, 144, 185, 461
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	5 cut(s)	239, 288, 320, 341, 365
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	103, 106
HpyAV	CCTTC	2 cut(s)	97, 450
HpyCH4III	ACNGT	3 cut(s)	250, 337, 409
HpyCH4IV	ACGT	4 cut(s)	101, 402, 419, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 181
HpyF3I	CTNAG	2 cut(s)	321, 366
HpySE526I	ACGT	4 cut(s)	101, 402, 419, 429
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	501
HspAI	GCGC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	114, 169
Lsp1109I	GCAGC	4 cut(s)	12, 159, 162, 374
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	4 cut(s)	101, 402, 419, 429
MaeIII	GTNAC	1 cut(s)	403
MboII	GAAGA	6 cut(s)	45, 145, 203, 239, 254, 272
MluCI	AATT	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	325
MspA1I	CMGCKG	2 cut(s)	25, 256
MspI	CCGG	4 cut(s)	138, 144, 185, 461
MspR9I	CCNGG	2 cut(s)	139, 145
MwoI	GCNNNNNNNGC	2 cut(s)	172, 181
NciI	CCSGG	2 cut(s)	139, 145
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	235, 277
PkrI	GCNGC	5 cut(s)	27, 150, 174, 177, 389
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	71, 141, 458
SatI	GCNGC	5 cut(s)	26, 149, 173, 176, 388
Sau96I	GGNCC	3 cut(s)	71, 141, 458
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	139, 145
SfaNI	GCATC	1 cut(s)	334
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	470
SsiI	CCGC	6 cut(s)	23, 112, 118, 148, 178, 254
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	137, 143
TaaI	ACNGT	3 cut(s)	250, 337, 409
TaiI	ACGT	4 cut(s)	104, 405, 422, 432
TasI	AATT	1 cut(s)	470
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	235, 277
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	4 cut(s)	25, 172, 175, 387
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	350, 455
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	470
XbaI	TCTAGA	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.