Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002624.1

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Forward (+)

900 .. 2384

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002624.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggcctctctctccaaaccaccgctgctcgtccacaaccacctaacctccctcgctctgattggtcccgcaactctctccttccccatcgccaaaacgacgtcgctccgcacccgcctctgcgcgctgaagaccggggccgacggcggaagcagaaccgggcggcaggaggcggacgggccggagctgctgcggaagccggtggtgaaggacgtggacgtggacgtggacgggatttcggaggaagatgaaggtgaggaagggaaatgggttgattgggaagataagattctggaggacacggttccgctggttgggtttgtgaggatgattcttcattctgggaaatatgagagcggagataggttgagtcccgagcatgagaagactgttcttgagaggctgcttccgtttcatcctgaagctgcaaagaagatcggttccggaattgattacgtcacggtaggttatcatccagattttgaaagctcaagatgtttgttcatcgttcaaaaagatggcacattggtcgacttttcatattggaaatgcataaaggggctgattaggaagaactatcccttatatgctgacagcttcattctaagacattttcgaaagcgtagacgcggtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

7.06

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	531, 625
AccII	CGCG	2 cut(s)	125, 630
AccIII	TCCGGA	1 cut(s)	443
AcuI	CTGAAG	2 cut(s)	149, 441
AcyI	GRCGYC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	485, 512
AjiI	CACGTC	3 cut(s)	214, 220, 226
AluBI	AGCT	4 cut(s)	187, 425, 489, 597
AluI	AGCT	4 cut(s)	187, 425, 489, 597
Ama87I	CYCGRG	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	443
AoxI	GGCC	3 cut(s)	3, 138, 179
ApeKI	GCWGC	5 cut(s)	25, 187, 190, 403, 425
AspLEI	GCGC	2 cut(s)	125, 127
AspS9I	GGNCC	3 cut(s)	65, 138, 179
AsuC2I	CCSGG	2 cut(s)	136, 160
AsuHPI	GGTGA	2 cut(s)	217, 266
AsuII	TTCGAA	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	137, 392
BbvI	GCAGC	5 cut(s)	12, 174, 177, 390, 412
BccI	CCATC	2 cut(s)	95, 512
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BcnI	CCSGG	2 cut(s)	136, 160
BisI	GCNGC	6 cut(s)	26, 164, 188, 191, 404, 426
BlsI	GCNGC	6 cut(s)	27, 165, 189, 192, 405, 427
Bme1390I	CCNGG	2 cut(s)	136, 160
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	374
BmgBI	CACGTC	3 cut(s)	214, 220, 226
BmgT120I	GGNCC	3 cut(s)	65, 138, 179
BmiI	GGNNCC	4 cut(s)	67, 139, 306, 442
BmrFI	CCNGG	2 cut(s)	136, 160
BpiI	GAAGAC	2 cut(s)	137, 392
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	616
BpuEI	CTTGAG	2 cut(s)	416, 475
BpuMI	CCSGG	2 cut(s)	136, 160
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	333, 415, 472
BseLI	CCNNNNNNNGG	1 cut(s)	314
BsePI	GCGCGC	1 cut(s)	123
BseXI	GCAGC	5 cut(s)	12, 174, 177, 390, 412
Bsh1236I	CGCG	2 cut(s)	125, 630
BshFI	GGCC	3 cut(s)	5, 140, 181
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	5 cut(s)	135, 159, 182, 200, 444
BslFI	GGGAC	2 cut(s)	51, 357
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	2 cut(s)	51, 357
BsnI	GGCC	3 cut(s)	5, 140, 181
BsoBI	CYCGRG	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	5, 140, 181
BspEI	TCCGGA	1 cut(s)	443
BspFNI	CGCG	2 cut(s)	125, 630
BspLI	GGNNCC	4 cut(s)	67, 139, 306, 442
BspT104I	TTCGAA	1 cut(s)	616
BsrBI	CCGCTC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	135
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	304, 391, 463
BstACI	GRCGYC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	333, 415, 472
BstFNI	CGCG	2 cut(s)	125, 630
BstHHI	GCGC	2 cut(s)	125, 127
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 196
BstSCI	CCNGG	2 cut(s)	134, 158
BstUI	CGCG	2 cut(s)	125, 630
BstV1I	GCAGC	5 cut(s)	12, 174, 177, 390, 412
BstV2I	GAAGAC	2 cut(s)	137, 392
BsuRI	GGCC	3 cut(s)	5, 140, 181
BtgZI	GCGATG	1 cut(s)	73
BtrI	CACGTC	3 cut(s)	214, 220, 226
BtsCI	GGATG	3 cut(s)	333, 415, 472
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	2 cut(s)	125, 127
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	65, 138, 179
CviAII	CATG	1 cut(s)	380
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EciI	GGCGGA	2 cut(s)	162, 188
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	149, 441
Eco88I	CYCGRG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	554
FaeI	CATG	1 cut(s)	383
FaiI	YATR	7 cut(s)	351, 381, 541, 554, 586, 588, 637
FaqI	GGGAC	2 cut(s)	51, 357
FatI	CATG	1 cut(s)	379
FauI	CCCGC	2 cut(s)	76, 122
FblI	GTMKAC	2 cut(s)	531, 625
Fnu4HI	GCNGC	6 cut(s)	26, 164, 188, 191, 404, 426
FokI	GGATG	3 cut(s)	340, 402, 459
Fsp4HI	GCNGC	6 cut(s)	26, 164, 188, 191, 404, 426
GlaI	GCGC	2 cut(s)	124, 126
GluI	GCNGC	6 cut(s)	26, 164, 188, 191, 404, 426
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	5, 140, 181
HapII	CCGG	5 cut(s)	135, 159, 182, 200, 444
HhaI	GCGC	2 cut(s)	125, 127
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	2 cut(s)	123, 125
HinP1I	GCGC	2 cut(s)	123, 125
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	3 cut(s)	289, 331, 370
HpaII	CCGG	5 cut(s)	135, 159, 182, 200, 444
HphI	GGTGA	2 cut(s)	217, 266
Hpy166II	GTNNAC	6 cut(s)	34, 217, 223, 229, 532, 626
Hpy188I	TCNGA	2 cut(s)	60, 241
Hpy188III	TCNNGA	7 cut(s)	293, 374, 395, 419, 444, 476, 492
Hpy8I	GTNNAC	6 cut(s)	34, 217, 223, 229, 532, 626
Hpy99I	CGWCG	3 cut(s)	103, 106, 146
HpyAV	CCTTC	4 cut(s)	91, 202, 245, 254
HpyCH4III	ACNGT	3 cut(s)	304, 391, 463
HpyCH4IV	ACGT	5 cut(s)	101, 213, 219, 225, 456
HpyCH4V	TGCA	2 cut(s)	428, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 196
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	5 cut(s)	101, 213, 219, 225, 456
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	2 cut(s)	123, 125
Kpn2I	TCCGGA	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	111, 184
Lsp1109I	GCAGC	5 cut(s)	12, 174, 177, 390, 412
MaeII	ACGT	5 cut(s)	101, 213, 219, 225, 456
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	1 cut(s)	435
MboII	GAAGA	7 cut(s)	142, 257, 293, 326, 397, 445, 583
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	379
Mph1103I	ATGCAT	1 cut(s)	554
MroI	TCCGGA	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	25, 310
MspI	CCGG	5 cut(s)	135, 159, 182, 200, 444
MspR9I	CCNGG	2 cut(s)	136, 160
MvnI	CGCG	2 cut(s)	125, 630
MwoI	GCNNNNNNNGC	2 cut(s)	187, 196
NciI	CCSGG	2 cut(s)	136, 160
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	4 cut(s)	67, 139, 306, 442
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	554
NspV	TTCGAA	1 cut(s)	616
PauI	GCGCGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	289, 331
PkrI	GCNGC	6 cut(s)	27, 165, 189, 192, 405, 427
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	67, 139, 306, 442
PspPI	GGNCC	3 cut(s)	65, 138, 179
PteI	GCGCGC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	530
SatI	GCNGC	6 cut(s)	26, 164, 188, 191, 404, 426
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	65, 138, 179
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	136, 160
SfuI	TTCGAA	1 cut(s)	616
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	395, 490
SmoI	CTYRAG	2 cut(s)	395, 490
Sse9I	AATT	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	134, 158
TaaI	ACNGT	3 cut(s)	304, 391, 463
TaiI	ACGT	5 cut(s)	104, 216, 222, 228, 459
TaqI	TCGA	2 cut(s)	531, 616
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	289, 331
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	5 cut(s)	25, 187, 190, 403, 425
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	6 cut(s)	264, 326, 404, 493, 528, 589
TspGWI	ACGGA	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	531, 625
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.