Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Forward (+)

65597324 .. 65600327

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG488100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCTCTCTCTCCAAACCACCGCTGCTCGTCCACAACCACCTAAGCTCCCTCGCTCTGATTGGTCCCGCAACTCTATCCTTCCCCATCGCCAAAACGACGTCGCTCCGCACCCGCCTCTGCGCGCTGAAGACCGGCGCCGACGGCGGAAGTAGAACCGGGCGGCAGGAGGCGGACGGGCCGGAGCTGCTGCGGAAGCCGGTGGTGAAGGACTTGGACGTGGACGTGGACGTGGACGTGGATGGGATTTCGGAGGAAGATGAAGGTGAGGAAGGGAAATGGGTTGATTGGGAAGATAAGATTCTGGAAGACACGGTTCCGCTGGTTGGGTTTGTGAGGATGATTCTTCATTCTGGGAAATATGAGAGCGGAGATAGGTTGAGTCCCGAGCATGAGAAGACTGTTCTTGAGAGGCTGCTTCCGTTTCATCCTGAAGCTGCGAAGAAGATCGGTTCCGGAATTGATTACGTCACGGTTGGTTATCATCCAGATTTTGAAAGCTCAAGATGCTTGTTCATCGTTCAAAAAGATGGCACATTGGTCGACTTTTCATATTGGAAATGCATAAAGGGGCTGATTAGGAAGAACTATCCCTTATATGCTGACAGCTTCATTCTAAGACATTTTCGAAAGCGTAGACGCGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

6.39

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	113 - 189	8.4e-30	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	369
AccI	GTMKAC	2 cut(s)	543, 637
AccII	CGCG	2 cut(s)	125, 642
AccIII	TCCGGA	1 cut(s)	455
AcuI	CTGAAG	2 cut(s)	149, 453
AcyI	GRCGYC	2 cut(s)	101, 138
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	497, 524
AjiI	CACGTC	4 cut(s)	220, 226, 232, 238
AluBI	AGCT	5 cut(s)	48, 187, 437, 501, 609
AluI	AGCT	5 cut(s)	48, 187, 437, 501, 609
Ama87I	CYCGRG	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	455
AoxI	GGCC	2 cut(s)	3, 179
ApeKI	GCWGC	5 cut(s)	25, 187, 190, 415, 437
AspLEI	GCGC	3 cut(s)	125, 127, 140
AspS9I	GGNCC	2 cut(s)	65, 179
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	217, 278
AsuII	TTCGAA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	3 cut(s)	137, 315, 404
BbvI	GCAGC	5 cut(s)	12, 174, 177, 402, 424
BccI	CCATC	3 cut(s)	95, 236, 524
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BcnI	CCSGG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	6 cut(s)	26, 164, 188, 191, 416, 438
BlsI	GCNGC	6 cut(s)	27, 165, 189, 192, 417, 439
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	386
BmgBI	CACGTC	4 cut(s)	220, 226, 232, 238
BmgT120I	GGNCC	2 cut(s)	65, 179
BmiI	GGNNCC	4 cut(s)	67, 139, 318, 454
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	3 cut(s)	137, 315, 404
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	2 cut(s)	428, 487
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	101, 138
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	2 cut(s)	134, 199
BseAI	TCCGGA	1 cut(s)	455
BseGI	GGATG	4 cut(s)	247, 345, 427, 484
BseLI	CCNNNNNNNGG	1 cut(s)	326
BsePI	GCGCGC	1 cut(s)	123
BseXI	GCAGC	5 cut(s)	12, 174, 177, 402, 424
Bsh1236I	CGCG	2 cut(s)	125, 642
BshFI	GGCC	2 cut(s)	5, 181
BshNI	GGYRCC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	5 cut(s)	135, 159, 182, 200, 456
BslFI	GGGAC	2 cut(s)	51, 369
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	51, 369
BsnI	GGCC	2 cut(s)	5, 181
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	447
BspANI	GGCC	2 cut(s)	5, 181
BspEI	TCCGGA	1 cut(s)	455
BspFNI	CGCG	2 cut(s)	125, 642
BspLI	GGNNCC	4 cut(s)	67, 139, 318, 454
BspT104I	TTCGAA	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	369
BsrFI	RCCGGY	2 cut(s)	134, 199
BssAI	RCCGGY	2 cut(s)	134, 199
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	1 cut(s)	447
BssNI	GRCGYC	2 cut(s)	101, 138
Bst4CI	ACNGT	3 cut(s)	316, 403, 475
BstACI	GRCGYC	2 cut(s)	101, 138
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	44, 617
BstF5I	GGATG	4 cut(s)	247, 345, 427, 484
BstFNI	CGCG	2 cut(s)	125, 642
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	125, 127, 140
BstKTI	GATC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 187, 196, 507
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	125, 642
BstV1I	GCAGC	5 cut(s)	12, 174, 177, 402, 424
BstV2I	GAAGAC	3 cut(s)	137, 315, 404
BsuRI	GGCC	2 cut(s)	5, 181
BtgZI	GCGATG	1 cut(s)	73
BtrI	CACGTC	4 cut(s)	220, 226, 232, 238
BtsCI	GGATG	4 cut(s)	247, 345, 427, 484
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	3 cut(s)	125, 127, 140
Cfr10I	RCCGGY	2 cut(s)	134, 199
Cfr13I	GGNCC	2 cut(s)	65, 179
CviAII	CATG	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	44, 617
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
EciI	GGCGGA	2 cut(s)	162, 188
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	149, 453
Eco88I	CYCGRG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	566
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaeI	CATG	1 cut(s)	395
FaiI	YATR	7 cut(s)	363, 393, 553, 566, 598, 600, 649
FaqI	GGGAC	2 cut(s)	51, 369
FatI	CATG	1 cut(s)	391
FauI	CCCGC	2 cut(s)	76, 122
FblI	GTMKAC	2 cut(s)	543, 637
Fnu4HI	GCNGC	6 cut(s)	26, 164, 188, 191, 416, 438
FokI	GGATG	4 cut(s)	254, 352, 414, 471
Fsp4HI	GCNGC	6 cut(s)	26, 164, 188, 191, 416, 438
GlaI	GCGC	3 cut(s)	124, 126, 139
GluI	GCNGC	6 cut(s)	26, 164, 188, 191, 416, 438
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	5, 181
HapII	CCGG	5 cut(s)	135, 159, 182, 200, 456
HhaI	GCGC	3 cut(s)	125, 127, 140
Hin1I	GRCGYC	2 cut(s)	101, 138
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	3 cut(s)	123, 125, 138
HinP1I	GCGC	3 cut(s)	123, 125, 138
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	301, 343, 382
HpaII	CCGG	5 cut(s)	135, 159, 182, 200, 456
HphI	GGTGA	2 cut(s)	217, 278
Hpy166II	GTNNAC	6 cut(s)	34, 223, 229, 235, 544, 638
Hpy188I	TCNGA	2 cut(s)	60, 253
Hpy188III	TCNNGA	7 cut(s)	305, 386, 407, 431, 456, 488, 504
Hpy8I	GTNNAC	6 cut(s)	34, 223, 229, 235, 544, 638
Hpy99I	CGWCG	3 cut(s)	103, 106, 146
HpyAV	CCTTC	4 cut(s)	91, 202, 257, 266
HpyCH4III	ACNGT	3 cut(s)	316, 403, 475
HpyCH4IV	ACGT	6 cut(s)	101, 219, 225, 231, 237, 468
HpyCH4V	TGCA	1 cut(s)	564
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 187, 196, 507
HpyF3I	CTNAG	2 cut(s)	44, 617
HpySE526I	ACGT	6 cut(s)	101, 219, 225, 231, 237, 468
Hsp92I	GRCGYC	2 cut(s)	101, 138
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	3 cut(s)	123, 125, 138
KasI	GGCGCC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	447
LmnI	GCTCC	3 cut(s)	53, 111, 184
Lsp1109I	GCAGC	5 cut(s)	12, 174, 177, 402, 424
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	6 cut(s)	101, 219, 225, 231, 237, 468
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	449
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	1 cut(s)	447
MboII	GAAGA	9 cut(s)	142, 269, 305, 320, 338, 409, 454, 457, 595
MluCI	AATT	1 cut(s)	459
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	8 cut(s)	16, 62, 128, 163, 247, 262, 330, 405
Mph1103I	ATGCAT	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	25, 322
MspI	CCGG	5 cut(s)	135, 159, 182, 200, 456
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	2 cut(s)	125, 642
MwoI	GCNNNNNNNGC	4 cut(s)	144, 187, 196, 507
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	4 cut(s)	67, 139, 318, 454
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	628
PauI	GCGCGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	301, 343
PkrI	GCNGC	6 cut(s)	27, 165, 189, 192, 417, 439
PleI	GAGTC	1 cut(s)	390
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	390
PspN4I	GGNNCC	4 cut(s)	67, 139, 318, 454
PspPI	GGNCC	2 cut(s)	65, 179
PteI	GCGCGC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	542
SatI	GCNGC	6 cut(s)	26, 164, 188, 191, 416, 438
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	2 cut(s)	65, 179
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	497
SfoI	GGCGCC	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	628
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	407, 502
SmoI	CTYRAG	2 cut(s)	407, 502
Sse9I	AATT	1 cut(s)	459
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	3 cut(s)	316, 403, 475
TaiI	ACGT	6 cut(s)	104, 222, 228, 234, 240, 471
TaqI	TCGA	2 cut(s)	543, 628
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	301, 343
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	5 cut(s)	25, 187, 190, 415, 437
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	6 cut(s)	276, 338, 416, 505, 540, 601
TspGWI	ACGGA	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	543, 637
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.