Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

37150373 .. 37152828

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCATCTCTCTCTAGATCACCGCCACTAGTCCACCACCAGATAAACTCCCTCACTCTCAACCCGTGCCCCGTAACTCTATCTTTCCCTTTCCTCAAAACGACTGCGCTCCAGGCCCGTCTCTGTGCCCTGAAGACCGGGGCGGACGGGGGCAGCAGAACCGGGAGGCCAGGAACGCAGGGACCCGACCCGGGATTGCTTCGGAAGCCGGTGGTGTCGTCCGGGAAGGACATGGATGGAATTTCGGATGAAGATGAAGGAGAAGACGGGAAATGGGTCGATTGGGAAGATAAGATTTTGGAAGACACGGTTCCTCTGGTTGGGTTCGTGAGGATGATACTTCATTCTGGGAAATACGAGAGCGGAGATAGATTGAGCCCTGAGCATGAGAAGACTGTTCTTGAGAGGTTGCTTCCATTTCACCCTGAAGCTCAGAAGAAGATCGGTTCTGGGATTGATTATATCACAGTTGGTTATCATCCTGATTTTGAAAGCTCAAGATGTTTGTTCATTGTTCAAAAGGATGGAACATTGGTCGACTTTTCATACTGGAAGTGCATAAAGGGGCTGATCAGGAAGAACTATCCTCTATACGCAGACAGCTTCATCCTCAGACATTTCCGAAAGCGCAGACGCGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

215

Amino Acids

23.99

Weight (kDa)

8.62

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	636
AciI	CCGC	4 cut(s)	23, 143, 363, 636
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	152, 447
AfiI	CCNNNNNNNGG	2 cut(s)	191, 320
AgsI	TTSAA	2 cut(s)	491, 518
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	111, 169
AluBI	AGCT	3 cut(s)	431, 495, 603
AluI	AGCT	3 cut(s)	431, 495, 603
Alw26I	GTCTC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	114, 167
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	109, 630
AspS9I	GGNCC	2 cut(s)	115, 182
AsuC2I	CCSGG	5 cut(s)	139, 163, 191, 192, 223
AsuHPI	GGTGA	2 cut(s)	12, 413
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	71, 130
BanII	GRGCYC	1 cut(s)	380
BbsI	GAAGAC	4 cut(s)	140, 270, 309, 398
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	230, 518
BciT130I	CCWGG	2 cut(s)	113, 171
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	5 cut(s)	139, 163, 191, 192, 223
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	2 cut(s)	15, 29
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	7 cut(s)	113, 139, 163, 171, 191, 192, 223
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	115, 182
BmiI	GGNNCC	3 cut(s)	183, 184, 312
BmrFI	CCNGG	7 cut(s)	113, 139, 163, 171, 191, 192, 223
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	4 cut(s)	140, 270, 309, 398
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	422, 481
BpuMI	CCSGG	5 cut(s)	139, 163, 191, 192, 223
BsaJI	CCNNGG	2 cut(s)	138, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 320
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	113, 171
BseDI	CCNNGG	2 cut(s)	138, 190
BseGI	GGATG	6 cut(s)	241, 253, 339, 478, 529, 606
BseLI	CCNNNNNNNGG	2 cut(s)	191, 320
BseMII	CTCAG	3 cut(s)	372, 446, 625
BseNI	ACTGG	1 cut(s)	554
BseSI	GKGCMC	2 cut(s)	71, 130
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	116, 169
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	5 cut(s)	138, 162, 191, 209, 222
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	191, 320
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	116, 169
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	71, 130, 380
Bsp143I	GATC	3 cut(s)	17, 441, 570
BspACI	CCGC	4 cut(s)	23, 143, 363, 636
BspANI	GGCC	2 cut(s)	116, 169
BspCNI	CTCAG	3 cut(s)	373, 445, 624
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	3 cut(s)	183, 184, 312
BsrBI	CCGCTC	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	138, 190
BssMI	GATC	3 cut(s)	17, 441, 570
Bst2UI	CCWGG	2 cut(s)	113, 171
Bst4CI	ACNGT	3 cut(s)	310, 397, 469
BstDEI	CTNAG	3 cut(s)	381, 432, 611
BstF5I	GGATG	6 cut(s)	241, 253, 339, 478, 529, 606
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	2 cut(s)	109, 630
BstKTI	GATC	3 cut(s)	20, 444, 573
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	17, 441, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 175, 205
BstNI	CCWGG	2 cut(s)	113, 171
BstSCI	CCNGG	7 cut(s)	111, 137, 161, 169, 189, 190, 221
BstSLI	GKGCMC	2 cut(s)	71, 130
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	4 cut(s)	140, 270, 309, 398
BsuRI	GGCC	2 cut(s)	116, 169
BtsCI	GGATG	6 cut(s)	241, 253, 339, 478, 529, 606
CfoI	GCGC	2 cut(s)	109, 630
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	115, 182
Cfr9I	CCCGGG	1 cut(s)	190
CviAII	CATG	2 cut(s)	232, 386
CviJI	RGCY	8 cut(s)	116, 169, 208, 378, 431, 495, 568, 603
CviKI_1	RGCY	8 cut(s)	116, 169, 208, 378, 431, 495, 568, 603
DdeI	CTNAG	3 cut(s)	381, 432, 611
DpnI	GATC	3 cut(s)	19, 443, 572
DpnII	GATC	3 cut(s)	17, 441, 570
EciI	GGCGGA	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	152, 447
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	111, 169
EcoT38I	GRGCYC	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	235, 389
FaiI	YATR	7 cut(s)	233, 387, 462, 547, 560, 592, 643
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	2 cut(s)	231, 385
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	6 cut(s)	248, 260, 346, 465, 536, 593
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	2 cut(s)	15, 29
GlaI	GCGC	2 cut(s)	108, 629
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	116, 169
HapII	CCGG	5 cut(s)	138, 162, 191, 209, 222
HhaI	GCGC	2 cut(s)	109, 630
Hin1II	CATG	2 cut(s)	235, 389
Hin6I	GCGC	2 cut(s)	107, 628
HinP1I	GCGC	2 cut(s)	107, 628
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HpaII	CCGG	5 cut(s)	138, 162, 191, 209, 222
HphI	GGTGA	2 cut(s)	12, 413
Hpy166II	GTNNAC	2 cut(s)	34, 538
Hpy188I	TCNGA	5 cut(s)	204, 247, 435, 614, 623
Hpy188III	TCNNGA	6 cut(s)	15, 328, 401, 482, 498, 574
Hpy8I	GTNNAC	2 cut(s)	34, 538
HpyAV	CCTTC	2 cut(s)	220, 251
HpyCH4III	ACNGT	3 cut(s)	310, 397, 469
HpyCH4V	TGCA	1 cut(s)	558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 175, 205
HpyF3I	CTNAG	3 cut(s)	381, 432, 611
Hsp92II	CATG	2 cut(s)	235, 389
HspAI	GCGC	2 cut(s)	107, 628
KflI	GGGWCCC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	17, 441, 570
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	15, 29
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	19, 443, 572
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	3 cut(s)	17, 441, 570
MboII	GAAGA	9 cut(s)	145, 263, 275, 299, 314, 403, 448, 451, 589
MhlI	GDGCHC	3 cut(s)	71, 130, 380
MluCI	AATT	1 cut(s)	240
MnlI	CCTC	8 cut(s)	62, 104, 159, 324, 324, 399, 597, 620
MspI	CCGG	5 cut(s)	138, 162, 191, 209, 222
MspR9I	CCNGG	7 cut(s)	113, 139, 163, 171, 191, 192, 223
MvaI	CCWGG	2 cut(s)	113, 171
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	3 cut(s)	113, 175, 205
NciI	CCSGG	5 cut(s)	139, 163, 191, 192, 223
NdeII	GATC	3 cut(s)	17, 441, 570
NlaIII	CATG	2 cut(s)	235, 389
NlaIV	GGNNCC	3 cut(s)	183, 184, 312
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	111, 169
PspGI	CCWGG	2 cut(s)	111, 169
PspN4I	GGNNCC	3 cut(s)	183, 184, 312
PspPI	GGNCC	2 cut(s)	115, 182
PspPPI	RGGWCCY	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	17, 441, 570
Sau96I	GGNCC	2 cut(s)	115, 182
ScrFI	CCNGG	7 cut(s)	113, 139, 163, 171, 191, 192, 223
SduI	GDGCHC	3 cut(s)	71, 130, 380
SetI	ASST	4 cut(s)	410, 433, 497, 605
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	182
SmaI	CCCGGG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	401, 496
SmoI	CTYRAG	2 cut(s)	401, 496
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	4 cut(s)	23, 143, 363, 636
SspMI	CTAG	2 cut(s)	15, 29
StyD4I	CCNGG	7 cut(s)	111, 137, 161, 169, 189, 190, 221
TaaI	ACNGT	3 cut(s)	310, 397, 469
TaqI	TCGA	2 cut(s)	279, 537
TasI	AATT	1 cut(s)	240
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	6 cut(s)	264, 270, 332, 499, 534, 595
TspMI	CCCGGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	240
XbaI	TCTAGA	1 cut(s)	14
XmaI	CCCGGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	15, 29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.