Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010127

Physical Location & Seq

Genomic Coordinates Reverse (-)

5623046 .. 5625992

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCATCTCTCTCCAGATCACCGCCGCTCCTCCACCACCACATAAACTCCCTCATCCTCCACCCCTGCCCCCTAACTCTATCCTTCCCTTTCCTCAAAGCGAAGTCGCCCCACCCCCGCCTCTGCGCCCTGAAGACCGGAGCCGACGGGGGAAGCAGAATTGGGAGGCCCGAGACGCCGGGGCCCGACCCGGAACTGCTCCGGAAGCCGGTGGTGTCGTCTGGGAAGGACATGGATGGGAATTCGGAGGAAGATGAGGGAGAAGACGGGAAGTGGGTCGATTGGGAGGATAAGATTTTGGAGGACACGGTTCCGCTGGTAGGGTTTGTGAGGATGATTCTTCATTCGGGGAAGTATGAGAGTGGAGATAGATTGAGTCCTGAACATCAGAAGACTGTTCTCCAAAGGCTGCTTCCGTTTCATCCTGATGCTAAGAAGAAGATCGGTTCTGGGATCGATTATATCACGGTTGGTTATCACCCGGATTTTGAAAGCTCAAGATGTTTGTTCATTGTTCAAAAGGACGGAACACTAGTCGACTTTTCATATTGGAAATGCATAAAGGGGCTGATAAGGAAGAATTATCCTTTATACGCAGACAGCTTCATTCTCAGACATTTCCGAAAGCGCAGACGCGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

215

Amino Acids

24.22

Weight (kDa)

8.99

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	111 - 187	9.5e-30	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45230 AT1G45230
fragaria_vesca	FvH4_2g34340 FvH4_2g34340 FvH4_2g34360
malus_domestica	MD08G1099700.v1.1 MD15G1082000.v1.1
prunus_persica	Prupe.1G434700_v2.0.a1
pyrus_communis	pycom08g08100 pycom15g07660
rosa_chinensis	RchiOBHm_Chr6g0308021
rosa_laevigata	RLG00000010675
rosa_multiflora	Rmu_sc0002624.1_g000001 Rmu_sc0034030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160670
rosa_rugosa	Rorug06G0363100
rosa_samantha	Rh6AG471800 Rh6BG482900 Rh6CG488100 Rh6DG474300
rosa_wichuraiana	Rw6G041190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	5 cut(s)	23, 26, 118, 314, 636
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	208, 320
AgsI	TTSAA	2 cut(s)	491, 518
AhlI	ACTAGT	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	2 cut(s)	495, 603
AluI	AGCT	2 cut(s)	495, 603
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	2 cut(s)	167, 182
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	128, 630
AspS9I	GGNCC	3 cut(s)	168, 182, 183
AsuC2I	CCSGG	3 cut(s)	180, 191, 482
AsuHPI	GGTGA	2 cut(s)	12, 470
AvaI	CYCGRG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	3 cut(s)	140, 270, 398
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	230
BcnI	CCSGG	3 cut(s)	180, 191, 482
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	26, 410
BlsI	GCNGC	2 cut(s)	27, 411
Bme1390I	CCNGG	3 cut(s)	180, 191, 482
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	168, 182, 183
BmiI	GGNNCC	4 cut(s)	142, 183, 184, 312
BmrFI	CCNGG	3 cut(s)	180, 191, 482
BmsI	GCATC	2 cut(s)	14, 418
BpiI	GAAGAC	3 cut(s)	140, 270, 398
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	3 cut(s)	180, 191, 482
Bsa29I	ATCGAT	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	2 cut(s)	137, 201
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 32, 42, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 320
Bse118I	RCCGGY	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	4 cut(s)	54, 241, 339, 421
BseLI	CCNNNNNNNGG	2 cut(s)	208, 320
BseMII	CTCAG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	169, 184
BshVI	ATCGAT	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	6 cut(s)	138, 179, 191, 202, 209, 482
BslI	CCNNNNNNNGG	2 cut(s)	208, 320
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	169, 184
BsoBI	CYCGRG	1 cut(s)	170
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	17, 441, 453
BspACI	CCGC	5 cut(s)	23, 26, 118, 314, 636
BspANI	GGCC	2 cut(s)	169, 184
BspCNI	CTCAG	1 cut(s)	624
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	4 cut(s)	142, 183, 184, 312
BspPI	GGATC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	3 cut(s)	17, 441, 453
BssNI	GRCGYC	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	310, 397, 469
BstACI	GRCGYC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	432, 611
BstF5I	GGATG	4 cut(s)	54, 241, 339, 421
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	2 cut(s)	128, 630
BstKTI	GATC	3 cut(s)	20, 444, 456
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	17, 441, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 205
BstSCI	CCNGG	3 cut(s)	178, 189, 480
BstSLI	GKGCMC	1 cut(s)	186
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	3 cut(s)	140, 270, 398
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	169, 184
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	54, 241, 339, 421
CfoI	GCGC	2 cut(s)	128, 630
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	168, 182, 183
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	184
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	8 cut(s)	143, 169, 184, 208, 409, 495, 568, 603
CviKI_1	RGCY	8 cut(s)	143, 169, 184, 208, 409, 495, 568, 603
DdeI	CTNAG	2 cut(s)	432, 611
DpnI	GATC	3 cut(s)	19, 443, 455
DpnII	GATC	3 cut(s)	17, 441, 453
Eco24I	GRGCYC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	235
FaiI	YATR	8 cut(s)	44, 233, 357, 462, 547, 560, 592, 643
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	26, 410
FokI	GGATG	4 cut(s)	41, 248, 346, 408
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	26, 410
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	2 cut(s)	127, 629
GluI	GCNGC	2 cut(s)	26, 410
HaeIII	GGCC	2 cut(s)	169, 184
HapII	CCGG	6 cut(s)	138, 179, 191, 202, 209, 482
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	128, 630
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	2 cut(s)	126, 628
HinP1I	GCGC	2 cut(s)	126, 628
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	337, 376
HpaII	CCGG	6 cut(s)	138, 179, 191, 202, 209, 482
HphI	GGTGA	2 cut(s)	12, 470
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	247, 390, 614, 623
Hpy188III	TCNNGA	5 cut(s)	15, 202, 380, 425, 498
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	94, 220
HpyCH4III	ACNGT	3 cut(s)	310, 397, 469
HpyCH4V	TGCA	1 cut(s)	558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 205
HpyF3I	CTNAG	2 cut(s)	432, 611
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	2 cut(s)	126, 628
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	17, 441, 453
LmnI	GCTCC	3 cut(s)	33, 140, 204
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	14, 418
MaeI	CTAG	1 cut(s)	533
MalI	GATC	3 cut(s)	19, 443, 455
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	3 cut(s)	17, 441, 453
MboII	GAAGA	8 cut(s)	145, 263, 275, 332, 403, 448, 451, 589
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	159, 241, 580
MlyI	GAGTC	1 cut(s)	385
Mph1103I	ATGCAT	1 cut(s)	560
MroI	TCCGGA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	6 cut(s)	138, 179, 191, 202, 209, 482
MspR9I	CCNGG	3 cut(s)	180, 191, 482
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	175, 205
NciI	CCSGG	3 cut(s)	180, 191, 482
NdeII	GATC	3 cut(s)	17, 441, 453
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	4 cut(s)	142, 183, 184, 312
NsiI	ATGCAT	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	27, 411
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspN4I	GGNNCC	4 cut(s)	142, 183, 184, 312
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	3 cut(s)	168, 182, 183
RseI	CAYNNNNRTG	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	2 cut(s)	26, 410
Sau3AI	GATC	3 cut(s)	17, 441, 453
Sau96I	GGNCC	3 cut(s)	168, 182, 183
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	180, 191, 482
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	2 cut(s)	497, 605
SfaNI	GCATC	2 cut(s)	14, 418
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	3 cut(s)	159, 241, 580
SsiI	CCGC	5 cut(s)	23, 26, 118, 314, 636
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	3 cut(s)	178, 189, 480
TaaI	ACNGT	3 cut(s)	310, 397, 469
TaqI	TCGA	3 cut(s)	279, 456, 537
TasI	AATT	3 cut(s)	159, 241, 580
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	332, 410, 499, 534, 595
TspGWI	ACGGA	2 cut(s)	405, 540
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.