AT1G47480

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011899
Physical Location & Seq
Forward (+)
17417492 .. 17419442
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47480.1

Sequence Viewer

Length: 945 bp
ATGGAATCAACAAAGAAGCAAGTCTCGTTGGAGCTACTTCCATGGTTAGTTGTCCACACCGATGGAACGGTAGAGAGACTAGCGGGAACCGAGGTTTGTCCTCCCGGTTTGGATCCAATAACCGGGGTTTTCTCTAAAGATATCATTATCGAACCGAAAACCGGTTTATCTGCCCGAATCTATCGACCCTTCTCGATTCAACCCGGTCAGAAGATTCCTCTCATGCTCTATTTTCATGGCGGTGCATTTCTCATCTCCTCCACTTCCTTCCCCTCTTACCACACCAGTCTTAACAAAATTGTCAATCAGGCTAACGTCATAGCCGTCTCTGTCAATTACAGACTAGCACCAGAACATCCACTTCCTACAGCGTACGAAGACTCATGGACTGCGCTAAAGAATATCCAAGCCATAAACGAGCCGTGGATCAACGACTACGCCGACTTGGACAGTTTATTCCTAGTGGGAGATAGCGCGGGAGCTAATATCTCGCACCACCTCGCATTTCGAGCCAAACAATCTGACCAAACCTTGAAAATCAAAGGCATTGGAATGATCCACCCATATTTTTGGGGGACACAACCTATCGGAGCAGAGATCAAAGACGAAGCGAGGAAACAAATGGTGGACGGATGGTGGGAATTCGTGTGCCCATCCGAGAAAGGATCCGATGACCCGTGGATTAATCCGTTTGCGGACGGGTCACCGGATCTTGGAGGGTTAGGGTGTGAGAGAGTGATGATTACTGTGGCGGAGAAAGATATATTGAATGAGAGAGGGAAGATGTATTACGAAAGATTGGTGAAGAGTGAGTGGAAAGGAAAGGTTGAGATTATGGAGACGAAAGAGAAAGATCATGTTTTTCATATTTTCGAGCCAGATTGTGATGAAGCTATGGAGATGGTACGATGCTTGGCTCTCTTTATAAACCAAGTTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

314

Amino Acids

35.25

Weight (kDa)

5.17

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 59 - 116 3.3e-07 Carboxylesterase family
BD-FAE PF20434 69 - 172 3.8e-09 BD-FAE
Abhydrolase_3 PF07859 75 - 289 5.2e-53 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 926
AccII CGCG 1 cut(s) 476
AciI CCGC 5 cut(s) 83, 240, 476, 695, 752
AclWI GGATC 7 cut(s) 107, 120, 434, 550, 660, 673, 717
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 2 cut(s) 374, 906
AfiI CCNNNNNNNGG 3 cut(s) 122, 161, 713
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 4 cut(s) 200, 535, 769, 938
AluBI AGCT 4 cut(s) 34, 482, 893, 941
AluI AGCT 4 cut(s) 34, 482, 893, 941
Alw26I GTCTC 4 cut(s) 28, 70, 331, 833
AlwI GGATC 7 cut(s) 107, 120, 434, 550, 660, 673, 717
ApoI RAATTY 1 cut(s) 641
AseI ATTAAT 1 cut(s) 684
AsiGI ACCGGT 1 cut(s) 161
AspLEI GCGC 2 cut(s) 394, 476
AsuC2I CCSGG 3 cut(s) 105, 124, 204
AsuHPI GGTGA 2 cut(s) 696, 814
BaeGI GKGCMC 1 cut(s) 653
BamHI GGATCC 2 cut(s) 112, 665
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
BbsI GAAGAC 1 cut(s) 384
BccI CCATC 4 cut(s) 56, 627, 661, 895
BceAI ACGGC 2 cut(s) 308, 406
BcnI CCSGG 3 cut(s) 105, 124, 204
BcoDI GTCTC 4 cut(s) 28, 70, 331, 833
BfaI CTAG 3 cut(s) 80, 344, 461
BfmI CTRYAG 1 cut(s) 366
Bme1390I CCNGG 3 cut(s) 105, 124, 204
BmiI GGNNCC 3 cut(s) 88, 114, 667
BmrFI CCNGG 3 cut(s) 105, 124, 204
BmsI GCATC 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 384
BpuMI CCSGG 3 cut(s) 105, 124, 204
BsaJI CCNNGG 5 cut(s) 41, 90, 123, 422, 677
BsaWI WCCGGW 2 cut(s) 161, 706
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 161, 713
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 285
BseDI CCNNGG 5 cut(s) 41, 90, 123, 422, 677
BseGI GGATG 3 cut(s) 355, 638, 653
BseLI CCNNNNNNNGG 3 cut(s) 122, 161, 713
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 476
BshTI ACCGGT 1 cut(s) 161
BsiSI CCGG 5 cut(s) 105, 123, 162, 204, 707
BsiWI CGTACG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 3 cut(s) 122, 161, 713
BsmAI GTCTC 4 cut(s) 28, 70, 331, 833
BsmBI CGTCTC 2 cut(s) 331, 833
BsmFI GGGAC 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 5 cut(s) 83, 240, 476, 695, 752
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 3 cut(s) 88, 114, 667
BspPI GGATC 7 cut(s) 107, 120, 434, 550, 660, 673, 717
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 5 cut(s) 41, 90, 123, 422, 677
BssMI GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 3 cut(s) 70, 452, 748
Bst6I CTCTTC 1 cut(s) 800
BstDSI CCRYGG 3 cut(s) 41, 422, 677
BstEII GGTNACC 1 cut(s) 702
BstF5I GGATG 3 cut(s) 355, 638, 653
BstFNI CGCG 1 cut(s) 476
BstHHI GCGC 2 cut(s) 394, 476
BstKTI GATC 7 cut(s) 115, 429, 558, 600, 668, 712, 856
BstMAI GTCTC 4 cut(s) 28, 70, 331, 833
BstMBI GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstPI GGTNACC 1 cut(s) 702
BstSCI CCNGG 3 cut(s) 103, 122, 202
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 1 cut(s) 476
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 3 cut(s) 112, 665, 709
BstXI CCANNNNNNTGG 2 cut(s) 62, 570
BstYI RGATCY 3 cut(s) 112, 665, 709
BtgI CCRYGG 3 cut(s) 41, 422, 677
BtsCI GGATG 3 cut(s) 355, 638, 653
CfoI GCGC 2 cut(s) 394, 476
Cfr10I RCCGGY 1 cut(s) 161
Csp6I GTAC 2 cut(s) 373, 905
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 5 cut(s) 42, 223, 236, 384, 857
CviQI GTAC 2 cut(s) 373, 905
DpnI GATC 7 cut(s) 114, 428, 557, 599, 667, 711, 855
DpnII GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
EciI GGCGGA 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 41
Eco32I GATATC 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 702
EcoO65I GGTNACC 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 641
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 2 cut(s) 331, 833
FaeI CATG 5 cut(s) 45, 226, 239, 387, 860
FaqI GGGAC 1 cut(s) 589
FatI CATG 5 cut(s) 41, 222, 235, 383, 856
FauI CCCGC 2 cut(s) 76, 469
FokI GGATG 3 cut(s) 342, 640, 645
FspBI CTAG 3 cut(s) 80, 344, 461
GlaI GCGC 2 cut(s) 393, 475
HapII CCGG 5 cut(s) 105, 123, 162, 204, 707
HhaI GCGC 2 cut(s) 394, 476
Hin1II CATG 5 cut(s) 45, 226, 239, 387, 860
Hin6I GCGC 2 cut(s) 392, 474
HinP1I GCGC 2 cut(s) 392, 474
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 5 cut(s) 5, 177, 196, 214, 380
HpaII CCGG 5 cut(s) 105, 123, 162, 204, 707
HphI GGTGA 2 cut(s) 696, 814
Hpy166II GTNNAC 2 cut(s) 55, 628
Hpy188I TCNGA 5 cut(s) 210, 523, 590, 658, 670
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 2 cut(s) 55, 628
HpyAV CCTTC 2 cut(s) 199, 277
HpyCH4III ACNGT 3 cut(s) 70, 452, 748
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 5 cut(s) 45, 226, 239, 387, 860
HspAI GCGC 2 cut(s) 392, 474
Kzo9I GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
LmnI GCTCC 3 cut(s) 31, 479, 590
LpnPI CCDG 9 cut(s) 118, 136, 175, 217, 293, 298, 363, 720, 891
LweI GCATC 1 cut(s) 899
MaeI CTAG 3 cut(s) 80, 344, 461
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 702
MalI GATC 7 cut(s) 114, 428, 557, 599, 667, 711, 855
MboI GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
MboII GAAGA 4 cut(s) 223, 389, 793, 817
MflI RGATCY 3 cut(s) 112, 665, 709
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 3 cut(s) 297, 334, 641
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 9 cut(s) 85, 111, 228, 268, 283, 509, 606, 710, 770
MseI TTAA 2 cut(s) 291, 684
MslI CAYNNNNRTG 3 cut(s) 60, 240, 551
MspI CCGG 5 cut(s) 105, 123, 162, 204, 707
MspR9I CCNGG 3 cut(s) 105, 124, 204
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 509
NciI CCSGG 3 cut(s) 105, 124, 204
NcoI CCATGG 1 cut(s) 41
NdeII GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
NlaIII CATG 5 cut(s) 45, 226, 239, 387, 860
NlaIV GGNNCC 3 cut(s) 88, 114, 667
NmuCI GTSAC 1 cut(s) 702
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 438
PfeI GAWTC 4 cut(s) 5, 177, 196, 214
Pfl23II CGTACG 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 161
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 684
PsiI TTATAA 1 cut(s) 926
PspEI GGTNACC 1 cut(s) 702
PspLI CGTACG 1 cut(s) 372
PspN4I GGNNCC 3 cut(s) 88, 114, 667
PsuI RGATCY 3 cut(s) 112, 665, 709
RsaI GTAC 2 cut(s) 374, 906
RsaNI GTAC 2 cut(s) 373, 905
RseI CAYNNNNRTG 3 cut(s) 60, 240, 551
SaqAI TTAA 2 cut(s) 291, 684
Sau3AI GATC 7 cut(s) 112, 426, 555, 597, 665, 709, 853
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 105, 124, 204
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 1 cut(s) 899
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 3 cut(s) 60, 240, 551
Sse9I AATT 3 cut(s) 297, 334, 641
SsiI CCGC 5 cut(s) 83, 240, 476, 695, 752
SspMI CTAG 3 cut(s) 80, 344, 461
StyD4I CCNGG 3 cut(s) 103, 122, 202
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 70, 452, 748
TaiI ACGT 1 cut(s) 318
TaqI TCGA 5 cut(s) 150, 184, 194, 508, 873
TasI AATT 3 cut(s) 297, 334, 641
TfiI GAWTC 4 cut(s) 5, 177, 196, 214
Tru1I TTAA 2 cut(s) 291, 684
Tru9I TTAA 2 cut(s) 291, 684
TseFI GTSAC 1 cut(s) 702
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 3 cut(s) 224, 854, 903
TspGWI ACGGA 2 cut(s) 645, 678
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 641
XspI CTAG 3 cut(s) 80, 344, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.