Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005715.1

Orthogroup ID

OG0011899

Physical Location & Seq

Genomic Coordinates Reverse (-)

29815 .. 30759

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005715.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgggttccagtgaagtctctcttgaagttcctccatacgcgcgagtactcaaagatggaacaattgagagacttgccggaacccaagttgttccggccgggttagaccctcaaaccggagttttgtccaaagacatcgtgattttcccacaaaccggtgtctcagctagactttaccgaccaaatatcaccgctaccgaccaaaagcgtcctttgatcgtttactatcatggtggagctttttgcatagcttcagctgccgaaccactctaccacaactgccttaacatgcttgttgctgaggccagagccattgctgtttctgttaattacagattagcccctgagcatccactgccgattgcctatgaggattcttgggcagtgcttcaatgggtttttggtggtgaagatcgtgacggttgggttaaggatcatgttgattttgagcgagtgttcttggtgggagatagtgctggggctaatattgcgcaccacttggccttgcgggtcaagaagtccgacccggatccgaagctgaagattgctgggattgggctgatccatccttatttctgggggaaagatccgattggccgggaggtcgcggactcgttcaggaagtcaatggtggacacgtggtggaatttcgtctgcccatcagagaaagggggcgatgacccgcttatcaacccgtttcttgacggagccccgggtctcgaggggttggcttgtggtaaggtgcttgttcttgttgcaggaaatgacatattgagggacagagggaggctttattatgatgaattggtgaagaccaactgggcaggaagcaaagagttgattgaaacagaaggcgaagaccatgtgttccatatcttcaatcccaattgtgaaaaggccaagagcttgatcaagcatttgggttctttcataaaccaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

314

Amino Acids

34.61

Weight (kDa)

5.69

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47480
fragaria_vesca	FvH4_2g34680 FvH4_2g34730
malus_domestica	MD00G1000400.v1.1 MD08G1104000.v1.1 MD15G1085200.v1.1
prunus_persica	Prupe.1G439300_v2.0.a1
pyrus_communis	pycom08g08530
rosa_chinensis	RchiOBHm_Chr6g0307411 RchiOBHm_Chr6g0307511
rosa_laevigata	RLG00000010716
rosa_multiflora	Rmu_sc0000031.1_g000015 Rmu_sc0000031.1_g000022 Rmu_sc0005715.1_g000008
rosa_rugosa	Rorug06G0358500 Rorug06G0359200
rosa_samantha	Rh6CG484100 Rh6CG484900
rosa_wichuraiana	Rw6G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
AccII	CGCG	3 cut(s)	41, 43, 608
AciI	CCGC	4 cut(s)	192, 508, 608, 683
AclWI	GGATC	5 cut(s)	441, 524, 537, 556, 581
AcoI	YGGCCR	2 cut(s)	96, 595
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	237, 560
AcvI	CACGTG	1 cut(s)	639
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	116, 155
AflIII	ACRYGT	1 cut(s)	636
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	26, 392, 845, 880
AluBI	AGCT	6 cut(s)	167, 239, 251, 257, 538, 906
AluI	AGCT	6 cut(s)	167, 239, 251, 257, 538, 906
Alw26I	GTCTC	4 cut(s)	22, 64, 166, 722
AlwI	GGATC	5 cut(s)	441, 524, 537, 556, 581
Ama87I	CYCGRG	2 cut(s)	712, 719
AoxI	GGCC	5 cut(s)	96, 303, 501, 595, 897
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	646
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	43, 493
AsuC2I	CCSGG	5 cut(s)	100, 527, 599, 713, 714
AsuHPI	GGTGA	3 cut(s)	181, 419, 820
AvaI	CYCGRG	2 cut(s)	712, 719
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	712
BbrPI	CACGTG	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	818, 864
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	50, 573, 667
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	5 cut(s)	100, 527, 599, 713, 714
BcoDI	GTCTC	4 cut(s)	22, 64, 166, 722
BfaI	CTAG	2 cut(s)	168, 943
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	5 cut(s)	100, 527, 599, 713, 714
BmeT110I	CYCGRG	2 cut(s)	712, 719
BmiI	GGNNCC	4 cut(s)	7, 82, 531, 709
BmrFI	CCNGG	5 cut(s)	100, 527, 599, 713, 714
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	2 cut(s)	818, 864
Bpu10I	CCTNAGC	2 cut(s)	300, 345
BpuMI	CCSGG	5 cut(s)	100, 527, 599, 713, 714
BsaAI	YACGTR	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	711, 712
BsaWI	WCCGGW	2 cut(s)	116, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 155
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	9, 824
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	711, 712
BseGI	GGATG	2 cut(s)	349, 565
BseLI	CCNNNNNNNGG	2 cut(s)	116, 155
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	177, 291, 336
BseNI	ACTGG	2 cut(s)	9, 824
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	2 cut(s)	476, 548
Bsh1236I	CGCG	3 cut(s)	41, 43, 608
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	98, 305, 503, 597, 899
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	712, 719
BsiSI	CCGG	8 cut(s)	78, 95, 99, 117, 156, 527, 598, 713
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	116, 155
BsmAI	GTCTC	4 cut(s)	22, 64, 166, 722
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	5 cut(s)	98, 305, 503, 597, 899
Bso31I	GGTCTC	1 cut(s)	722
BsoBI	CYCGRG	2 cut(s)	712, 719
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
BspACI	CCGC	4 cut(s)	192, 508, 608, 683
BspANI	GGCC	5 cut(s)	98, 305, 503, 597, 899
BspCNI	CTCAG	3 cut(s)	176, 292, 337
BspFNI	CGCG	3 cut(s)	41, 43, 608
BspLI	GGNNCC	4 cut(s)	7, 82, 531, 709
BspPI	GGATC	5 cut(s)	441, 524, 537, 556, 581
BspTNI	GGTCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	9, 824
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	711, 712
BssMI	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
Bst4CI	ACNGT	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	163, 300, 345
BstF5I	GGATG	2 cut(s)	349, 565
BstFNI	CGCG	3 cut(s)	41, 43, 608
BstHHI	GCGC	2 cut(s)	43, 493
BstKTI	GATC	7 cut(s)	219, 415, 436, 532, 564, 589, 912
BstMAI	GTCTC	4 cut(s)	22, 64, 166, 722
BstMBI	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	5 cut(s)	98, 525, 597, 711, 712
BstUI	CGCG	3 cut(s)	41, 43, 608
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	818, 864
BstX2I	RGATCY	2 cut(s)	529, 586
BstYI	RGATCY	2 cut(s)	529, 586
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	5 cut(s)	98, 305, 503, 597, 899
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	349, 565
BtsI	GCAGTG	2 cut(s)	353, 390
BtsIMutI	CAGTG	3 cut(s)	16, 353, 390
CfoI	GCGC	2 cut(s)	43, 493
Cfr10I	RCCGGY	1 cut(s)	155
Cfr9I	CCCGGG	1 cut(s)	712
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	4 cut(s)	230, 289, 437, 863
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	163, 300, 345
DpnI	GATC	7 cut(s)	218, 414, 435, 531, 563, 588, 911
DpnII	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	2 cut(s)	96, 595
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	712
Eco31I	GGTCTC	1 cut(s)	722
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	237, 560
Eco72I	CACGTG	1 cut(s)	639
Eco88I	CYCGRG	2 cut(s)	712, 719
EcoT38I	GRGCYC	1 cut(s)	712
FaeI	CATG	4 cut(s)	233, 292, 440, 866
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	229, 288, 436, 862
FauI	CCCGC	2 cut(s)	501, 690
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	336, 552
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	168, 943
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	2 cut(s)	42, 492
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	2 cut(s)	480, 552
HaeIII	GGCC	5 cut(s)	98, 305, 503, 597, 899
HapII	CCGG	8 cut(s)	78, 95, 99, 117, 156, 527, 598, 713
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	43, 493
Hin1II	CATG	4 cut(s)	233, 292, 440, 866
Hin6I	GCGC	2 cut(s)	41, 491
HinP1I	GCGC	2 cut(s)	41, 491
HinfI	GANTC	2 cut(s)	374, 611
HpaII	CCGG	8 cut(s)	78, 95, 99, 117, 156, 527, 598, 713
HphI	GGTGA	3 cut(s)	181, 419, 820
Hpy166II	GTNNAC	2 cut(s)	223, 634
Hpy188I	TCNGA	4 cut(s)	523, 534, 591, 664
Hpy188III	TCNNGA	7 cut(s)	23, 139, 416, 514, 619, 701, 719
Hpy8I	GTNNAC	2 cut(s)	223, 634
HpyAV	CCTTC	1 cut(s)	845
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	2 cut(s)	246, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
HpyF3I	CTNAG	3 cut(s)	163, 300, 345
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	4 cut(s)	233, 292, 440, 866
HspAI	GCGC	2 cut(s)	41, 491
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
LmnI	GCTCC	2 cut(s)	236, 707
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	168, 943
MaeII	ACGT	1 cut(s)	638
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	7 cut(s)	218, 414, 435, 531, 563, 588, 911
MboI	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
MboII	GAAGA	5 cut(s)	422, 553, 823, 868, 869
MfeI	CAATTG	2 cut(s)	63, 886
MflI	RGATCY	2 cut(s)	529, 586
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	5 cut(s)	63, 328, 646, 803, 886
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	9 cut(s)	42, 120, 295, 364, 595, 715, 768, 776, 780
MseI	TTAA	3 cut(s)	285, 327, 429
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	8 cut(s)	78, 95, 99, 117, 156, 527, 598, 713
MspR9I	CCNGG	5 cut(s)	100, 527, 599, 713, 714
MunI	CAATTG	2 cut(s)	63, 886
MvnI	CGCG	3 cut(s)	41, 43, 608
MwoI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
NciI	CCSGG	5 cut(s)	100, 527, 599, 713, 714
NdeII	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
NlaIII	CATG	4 cut(s)	233, 292, 440, 866
NlaIV	GGNNCC	4 cut(s)	7, 82, 531, 709
NmuCI	GTSAC	1 cut(s)	416
NsbI	TGCGCA	1 cut(s)	492
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	605
PmaCI	CACGTG	1 cut(s)	639
PmlI	CACGTG	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	639
PspCI	CACGTG	1 cut(s)	639
PspFI	CCCAGC	2 cut(s)	476, 548
PspN4I	GGNNCC	4 cut(s)	7, 82, 531, 709
PsuI	RGATCY	2 cut(s)	529, 586
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	285, 327, 429
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	7 cut(s)	216, 412, 433, 529, 561, 586, 909
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	5 cut(s)	100, 527, 599, 713, 714
SduI	GDGCHC	1 cut(s)	712
SetI	ASST	9 cut(s)	169, 241, 253, 259, 540, 606, 641, 744, 908
SfaNI	GCATC	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmaI	CCCGGG	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	5 cut(s)	63, 328, 646, 803, 886
SsiI	CCGC	4 cut(s)	192, 508, 608, 683
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	168, 943
StyD4I	CCNGG	5 cut(s)	98, 525, 597, 711, 712
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	1 cut(s)	720
TasI	AATT	5 cut(s)	63, 328, 646, 803, 886
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	285, 327, 429
Tru9I	TTAA	3 cut(s)	285, 327, 429
TscAI	CASTG	3 cut(s)	16, 360, 390
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	816, 919
TspGWI	ACGGA	1 cut(s)	720
TspMI	CCCGGG	1 cut(s)	712
TspRI	CASTG	3 cut(s)	16, 360, 390
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	719
XmaI	CCCGGG	1 cut(s)	712
XspI	CTAG	2 cut(s)	168, 943
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.