Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011899

Physical Location & Seq

Genomic Coordinates Reverse (-)

64642243 .. 64643186

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGTTCCAGTGAAGTCTCTCTTGAAGTTCCTCCATACGCGCGAGTACTCAAAGATGGAACAATTGAGAGACTTGCCGGAACCCAAGTTGTTCCGGCCGGGTTAGACCCTCAAACCGGAGTTTTGTCCAAAGACATCGTGATTTTCCCACAAACCGGTGTCTCAGCTAGACTTTACCGACCAAATATCACCGCTACCGACCAAAAGGGTCCTTTGATCGTTTACTATCATGGTGGAGCTTTTTGCATAGCTTCAGCTGCCGAACCACTCTACCACAACTGCCTTAACATGCTTGTTGCTGAGGCCAGAGCCATTGCTGTTTCTGTTAATTACAGATTAGCCCCTGAGCATCCACTGCCGATTGCCTATGAGGATTCTTGGGCAGTGCTTCAATGGGTTTTTGGTGGTGAAGATCGTGACGATTGGGTTAAGGATCATGTTGATTTTGAGCGAGTGTTCTTGGTGGGAGATAGTGCTGGGGCTAATATTGCGCACCACTTGGCCTTGCGGGTCAAGAAGTCCGACCCGGATCTGAAGCTGAAGATTGCTGGGATTGGGCTGATCCATCCTTATTTCTGGGGGAAAATCCGATTGTCAATGGTGGACACGTGGTGGAATTTCGTCTGCCCATCAGAGAAAGGGGGCGATGACCCGCTTATCAACCCGTTTCTTGACGGAGCCCCGGGTCTCGAGGGGTTGGCTTGTGGTAAGGTGCTTGTTCTTGTTGCAGGAAATGACATATTGAGGGACAGAGGGAGGCTTTATTATGATGAATTGGTGAAGACCAACTGGGCAGGAAGCAAAGAGTTGATTGAAACAGAAGGGGAAGACCATGTGTTCCATATCTTCAATCCCAATTGTGAAAAGGCCAAGAGCTTGATCAAGCATTTGGGTTCTTTCATAAACCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

33.5

Weight (kDa)

5.57

Isoelectric Point (pI)

26.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	65 - 173	1.6e-10	BD-FAE
Abhydrolase_3	PF07859	73 - 281	2.5e-50	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47480
fragaria_vesca	FvH4_2g34680 FvH4_2g34730
malus_domestica	MD00G1000400.v1.1 MD08G1104000.v1.1 MD15G1085200.v1.1
prunus_persica	Prupe.1G439300_v2.0.a1
pyrus_communis	pycom08g08530
rosa_chinensis	RchiOBHm_Chr6g0307411 RchiOBHm_Chr6g0307511
rosa_laevigata	RLG00000010716
rosa_multiflora	Rmu_sc0000031.1_g000015 Rmu_sc0000031.1_g000022 Rmu_sc0005715.1_g000008
rosa_rugosa	Rorug06G0358500 Rorug06G0359200
rosa_samantha	Rh6CG484100 Rh6CG484900
rosa_wichuraiana	Rw6G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
AccII	CGCG	2 cut(s)	41, 43
AciI	CCGC	3 cut(s)	192, 508, 653
AclWI	GGATC	3 cut(s)	441, 537, 556
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	3 cut(s)	237, 554, 560
AcvI	CACGTG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	116, 155
AflIII	ACRYGT	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	26, 392, 815, 850
AluBI	AGCT	6 cut(s)	167, 239, 251, 257, 538, 876
AluI	AGCT	6 cut(s)	167, 239, 251, 257, 538, 876
Alw26I	GTCTC	4 cut(s)	22, 64, 166, 692
AlwI	GGATC	3 cut(s)	441, 537, 556
Ama87I	CYCGRG	2 cut(s)	682, 689
AoxI	GGCC	4 cut(s)	96, 303, 501, 867
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	616
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	43, 493
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	4 cut(s)	100, 527, 683, 684
AsuHPI	GGTGA	3 cut(s)	181, 419, 790
AvaI	CYCGRG	2 cut(s)	682, 689
AvaII	GGWCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	682
BbrPI	CACGTG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	788, 834
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	50, 573, 637
BclI	TGATCA	1 cut(s)	879
BcnI	CCSGG	4 cut(s)	100, 527, 683, 684
BcoDI	GTCTC	4 cut(s)	22, 64, 166, 692
BfaI	CTAG	2 cut(s)	168, 913
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	4 cut(s)	100, 527, 683, 684
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	2 cut(s)	682, 689
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	4 cut(s)	7, 82, 210, 679
BmrFI	CCNGG	4 cut(s)	100, 527, 683, 684
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	2 cut(s)	788, 834
Bpu10I	CCTNAGC	2 cut(s)	300, 345
BpuMI	CCSGG	4 cut(s)	100, 527, 683, 684
BsaAI	YACGTR	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	681, 682
BsaWI	WCCGGW	2 cut(s)	116, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 155
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	9, 794
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	681, 682
BseGI	GGATG	2 cut(s)	349, 565
BseLI	CCNNNNNNNGG	2 cut(s)	116, 155
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	177, 291, 336
BseNI	ACTGG	2 cut(s)	9, 794
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	2 cut(s)	476, 548
Bsh1236I	CGCG	2 cut(s)	41, 43
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	98, 305, 503, 869
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	682, 689
BsiSI	CCGG	7 cut(s)	78, 95, 99, 117, 156, 527, 683
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	2 cut(s)	116, 155
BsmAI	GTCTC	4 cut(s)	22, 64, 166, 692
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	98, 305, 503, 869
Bso31I	GGTCTC	1 cut(s)	692
BsoBI	CYCGRG	2 cut(s)	682, 689
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
BspACI	CCGC	3 cut(s)	192, 508, 653
BspANI	GGCC	4 cut(s)	98, 305, 503, 869
BspCNI	CTCAG	3 cut(s)	176, 292, 337
BspFNI	CGCG	2 cut(s)	41, 43
BspLI	GGNNCC	4 cut(s)	7, 82, 210, 679
BspPI	GGATC	3 cut(s)	441, 537, 556
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	9, 794
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	681, 682
BssMI	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	609
BstDEI	CTNAG	3 cut(s)	163, 300, 345
BstF5I	GGATG	2 cut(s)	349, 565
BstFNI	CGCG	2 cut(s)	41, 43
BstHHI	GCGC	2 cut(s)	43, 493
BstKTI	GATC	6 cut(s)	219, 415, 436, 532, 564, 882
BstMAI	GTCTC	4 cut(s)	22, 64, 166, 692
BstMBI	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	4 cut(s)	98, 525, 681, 682
BstUI	CGCG	2 cut(s)	41, 43
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	788, 834
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	98, 305, 503, 869
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	349, 565
BtsI	GCAGTG	2 cut(s)	353, 390
BtsIMutI	CAGTG	3 cut(s)	16, 353, 390
CfoI	GCGC	2 cut(s)	43, 493
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	209
Cfr9I	CCCGGG	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	4 cut(s)	230, 289, 437, 833
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	163, 300, 345
DpnI	GATC	6 cut(s)	218, 414, 435, 531, 563, 881
DpnII	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
DraIII	CACNNNGTG	1 cut(s)	612
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	682
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	237, 554, 560
Eco72I	CACGTG	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	682, 689
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	682
FaeI	CATG	4 cut(s)	233, 292, 440, 836
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	4 cut(s)	229, 288, 436, 832
FauI	CCCGC	2 cut(s)	501, 660
FbaI	TGATCA	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	336, 552
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	168, 913
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	2 cut(s)	42, 492
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	2 cut(s)	480, 552
HaeIII	GGCC	4 cut(s)	98, 305, 503, 869
HapII	CCGG	7 cut(s)	78, 95, 99, 117, 156, 527, 683
HhaI	GCGC	2 cut(s)	43, 493
Hin1II	CATG	4 cut(s)	233, 292, 440, 836
Hin6I	GCGC	2 cut(s)	41, 491
HinP1I	GCGC	2 cut(s)	41, 491
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	7 cut(s)	78, 95, 99, 117, 156, 527, 683
HphI	GGTGA	3 cut(s)	181, 419, 790
Hpy166II	GTNNAC	2 cut(s)	223, 604
Hpy188I	TCNGA	4 cut(s)	523, 534, 590, 634
Hpy188III	TCNNGA	6 cut(s)	23, 139, 416, 514, 671, 689
Hpy8I	GTNNAC	2 cut(s)	223, 604
HpyAV	CCTTC	1 cut(s)	815
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	2 cut(s)	246, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
HpyF3I	CTNAG	3 cut(s)	163, 300, 345
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	233, 292, 440, 836
HspAI	GCGC	2 cut(s)	41, 491
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
LmnI	GCTCC	2 cut(s)	236, 677
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	168, 913
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	6 cut(s)	218, 414, 435, 531, 563, 881
MboI	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
MboII	GAAGA	5 cut(s)	422, 553, 793, 838, 839
MfeI	CAATTG	2 cut(s)	63, 856
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	5 cut(s)	63, 328, 616, 773, 856
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	42, 120, 295, 364, 685, 738, 746, 750
MseI	TTAA	3 cut(s)	285, 327, 429
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	7 cut(s)	78, 95, 99, 117, 156, 527, 683
MspR9I	CCNGG	4 cut(s)	100, 527, 683, 684
MunI	CAATTG	2 cut(s)	63, 856
MvnI	CGCG	2 cut(s)	41, 43
MwoI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
NciI	CCSGG	4 cut(s)	100, 527, 683, 684
NdeII	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
NlaIII	CATG	4 cut(s)	233, 292, 440, 836
NlaIV	GGNNCC	4 cut(s)	7, 82, 210, 679
NmuCI	GTSAC	1 cut(s)	416
NsbI	TGCGCA	1 cut(s)	492
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	259
PmaCI	CACGTG	1 cut(s)	609
PmlI	CACGTG	1 cut(s)	609
Ppu21I	YACGTR	1 cut(s)	609
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	609
PspFI	CCCAGC	2 cut(s)	476, 548
PspN4I	GGNNCC	4 cut(s)	7, 82, 210, 679
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	285, 327, 429
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	6 cut(s)	216, 412, 433, 529, 561, 879
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	100, 527, 683, 684
SduI	GDGCHC	1 cut(s)	682
SetI	ASST	8 cut(s)	169, 241, 253, 259, 540, 611, 714, 878
SfaNI	GCATC	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	689
SinI	GGWCC	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	689
SmaI	CCCGGG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	5 cut(s)	63, 328, 616, 773, 856
SsiI	CCGC	3 cut(s)	192, 508, 653
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	168, 913
StyD4I	CCNGG	4 cut(s)	98, 525, 681, 682
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	1 cut(s)	690
TasI	AATT	5 cut(s)	63, 328, 616, 773, 856
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	285, 327, 429
Tru9I	TTAA	3 cut(s)	285, 327, 429
TscAI	CASTG	3 cut(s)	16, 360, 390
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	786, 889
TspGWI	ACGGA	1 cut(s)	690
TspMI	CCCGGG	1 cut(s)	682
TspRI	CASTG	3 cut(s)	16, 360, 390
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	689
XmaI	CCCGGG	1 cut(s)	682
XspI	CTAG	2 cut(s)	168, 913
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.