Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011899

Physical Location & Seq

Genomic Coordinates Forward (+)

50386 .. 50877

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1000400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTGCAACCACCTCACCAAAAGTGTTACTCGAAGTCTTTCCATACCTCCAGGTCCTCAAAGATGGCACAATCGACAGACTCACCGGAACCCAAGTCGCTCCTCCCGGCTTAGACCCCGAAACCGGAGTTTTATCCAAAAACATCGTCATCTTACCCCAAACCGGCGTCTCAGCCCAACTGTACCGACCCATCACCACCAAACTTGGCACAAAACTCCCCCTAGTCGTATACCTCCATGGTGGCGCCTTCTGCATATCCTCAGCCACCGACCCGTATTACCACACCAGCCTCAACAACCTTGTTGCAGAAGCCAACGCCATCGCAATTTTAGTAAATTATAGATTAGCCCCTGAGTACCCGCTCCCCATTGCCTATGAAGACTGCTGGGCAGCCTCCAACTGGGTTATTAACGGCGACGAAGATCGTGATTCGGGGGTCAAGGACGACGTCGATTTCAGCCGCGTGTTTTTGGTCGGAGACAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

164

Amino Acids

17.61

Weight (kDa)

4.61

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	62 - 117	3e-06	Carboxylesterase family
BD-FAE	PF20434	68 - 163	8.3e-09	BD-FAE
Abhydrolase_3	PF07859	76 - 163	1.7e-25	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47480
fragaria_vesca	FvH4_2g34680 FvH4_2g34730
malus_domestica	MD00G1000400.v1.1 MD08G1104000.v1.1 MD15G1085200.v1.1
prunus_persica	Prupe.1G439300_v2.0.a1
pyrus_communis	pycom08g08530
rosa_chinensis	RchiOBHm_Chr6g0307411 RchiOBHm_Chr6g0307511
rosa_laevigata	RLG00000010716
rosa_multiflora	Rmu_sc0000031.1_g000015 Rmu_sc0000031.1_g000022 Rmu_sc0005715.1_g000008
rosa_rugosa	Rorug06G0358500 Rorug06G0359200
rosa_samantha	Rh6CG484100 Rh6CG484900
rosa_wichuraiana	Rw6G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	465
AciI	CCGC	2 cut(s)	362, 463
AcyI	GRCGYC	3 cut(s)	168, 246, 450
AfaI	GTAC	2 cut(s)	185, 359
AfiI	CCNNNNNNNGG	3 cut(s)	125, 164, 402
AjnI	CCWGG	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	175, 474
ApeKI	GCWGC	2 cut(s)	5, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	9, 76, 187
AvaII	GGWCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	59, 200, 329
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	175, 474
BfaI	CTAG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	3 cut(s)	6, 393, 463
BlsI	GCNGC	3 cut(s)	7, 394, 464
Bme1390I	CCNGG	2 cut(s)	53, 108
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	91, 247
BmrFI	CCNGG	2 cut(s)	53, 108
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	3 cut(s)	168, 246, 450
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	86, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 164, 402
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	125, 164, 402
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	186, 276, 345
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	404
BseYI	CCCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	87, 108, 126, 165
BslI	CCNNNNNNNGG	3 cut(s)	125, 164, 402
BsmAI	GTCTC	2 cut(s)	175, 474
BsmBI	CGTCTC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	424
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	2 cut(s)	362, 463
BspCNI	CTCAG	3 cut(s)	185, 275, 346
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	91, 247
BspT107I	GGYRCC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	424
BssNAI	GTATAC	1 cut(s)	232
BssNI	GRCGYC	3 cut(s)	168, 246, 450
BssT1I	CCWWGG	1 cut(s)	238
Bst1107I	GTATAC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	183, 485
BstACI	GRCGYC	3 cut(s)	168, 246, 450
BstDEI	CTNAG	4 cut(s)	112, 172, 262, 354
BstDSI	CCRYGG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	175, 474
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 106
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	387
BstZ17I	GTATAC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	184, 358
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	239, 489
CviJI	RGCY	9 cut(s)	5, 111, 176, 266, 291, 314, 350, 395, 462
CviKI_1	RGCY	9 cut(s)	5, 111, 176, 266, 291, 314, 350, 395, 462
CviQI	GTAC	2 cut(s)	184, 358
DdeI	CTNAG	4 cut(s)	112, 172, 262, 354
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	238
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	242, 492
FaiI	YATR	7 cut(s)	46, 232, 240, 257, 342, 378, 490
FatI	CATG	2 cut(s)	238, 488
FauI	CCCGC	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	6, 393, 463
Fsp4HI	GCNGC	3 cut(s)	6, 393, 463
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	6, 393, 463
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	249
HapII	CCGG	4 cut(s)	87, 108, 126, 165
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	3 cut(s)	168, 246, 450
Hin1II	CATG	2 cut(s)	242, 492
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	81, 431
HpaII	CCGG	4 cut(s)	87, 108, 126, 165
HphI	GGTGA	3 cut(s)	9, 76, 187
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	479
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	422, 452, 455
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	183, 485
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	8, 255, 308, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	4 cut(s)	112, 172, 262, 354
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	3 cut(s)	168, 246, 450
Hsp92II	CATG	2 cut(s)	242, 492
HspAI	GCGC	1 cut(s)	246
KasI	GGCGCC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	106, 369
Lsp1109I	GCAGC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	1 cut(s)	424
MboII	GAAGA	2 cut(s)	392, 434
MluCI	AATT	2 cut(s)	327, 337
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	423, 457
MnlI	CCTC	8 cut(s)	25, 59, 68, 114, 245, 271, 302, 406
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	411
MspI	CCGG	4 cut(s)	87, 108, 126, 165
MspR9I	CCNGG	2 cut(s)	53, 108
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	252
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	242, 492
NlaIV	GGNNCC	2 cut(s)	91, 247
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	7, 394, 464
PleI	GAGTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	91, 247
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	449
RsaI	GTAC	2 cut(s)	185, 359
RsaNI	GTAC	2 cut(s)	184, 358
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	6, 393, 463
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	53, 108
SetI	ASST	6 cut(s)	17, 51, 57, 237, 303, 453
SfoI	GGCGCC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	327, 337
SsiI	CCGC	2 cut(s)	362, 463
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	51, 106
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	183, 485
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	33, 75, 453
TasI	AATT	2 cut(s)	327, 337
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	2 cut(s)	5, 392
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	490
Tth111I	GACNNNGTC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.