Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011899

Physical Location & Seq

Genomic Coordinates Forward (+)

25680422 .. 25681366

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGTTCCAATGAAGTCTTACTCGATGTTTCTCCGTATGCGAGAGTACTTAAAGATGGAACAATCGAGAGACTTAACGGAACCCAAGTTGTTCCGGCCGGGTTAGACCCTCTAACCGGAGTTCTATCCAAAGACATCGTCATTTGCCCGCAAACCGGTGTCTCAGCCAGACTTTACAAACCCAATATCACTGAAACCAGTCAAAAGCTTCCTTTGATCGTTTACTATCACGGTGGAGCTTTCTGTATAGCTTCAGCTGCTGAGCCACTCTACCACAACTGCCTCAACATGCTTGTTGCTGAGGCCAGAGCCATTGCTGTTTCTGTAAACTACAGATTAGCCCCTGAGCATCCCCTGCCGATTGCCTACGAGGATTCTTGGGCTGCGCTTGAATGGGTCTTCGGTGGTGAAGAACTTGACGAGTGGGTTAAGGATCATGTTGATTTGGAGCGAGTGTTTTTGGTGGGAGATAGTGCTGGGGCTAATATTGCACACCATTTGGCCTTGCGGGTCAAGAAGTCCGACCCGGATCCGAAGGTGAAGATTGCTGGGATTGGGATGATACATCCTTACTTCTGGGGGAAAGATCCGATTGGCCGGGAGGTGGCAGATTCGTTCAGAAAGTCGATGGTGGATACATGGTGGAGTTTTGTGTGCCCATCGGAGAAAGGGAGTGATGACCCGCTTATTAACCCGTTTATCGACGGATCCCCAAGTCTGGAGGGGTTGGCTTGTGGTAAGGTGCTTGTTCTTGTTGCAGGAGAAGACATACTGAGGGACAGAGGGAGGCTTTACTATGATGAACTGGTGAAGAGCAACGGGGCAGGAAGCAAAGAGTTGATTGAAACAGAAGGGGAAGATCATGTGTTCCATATCTTCAATCCTAATAGTGAAAAGGCTAAGAGCTTGATCAAGGATTTGGGTTCTTTCATAAATCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

315

Amino Acids

34.47

Weight (kDa)

5.16

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	59 - 174	5.5e-12	BD-FAE
COesterase	PF00135	59 - 170	3e-07	Carboxylesterase family
Abhydrolase_3	PF07859	73 - 291	1.3e-53	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47480
fragaria_vesca	FvH4_2g34680 FvH4_2g34730
malus_domestica	MD00G1000400.v1.1 MD08G1104000.v1.1 MD15G1085200.v1.1
prunus_persica	Prupe.1G439300_v2.0.a1
pyrus_communis	pycom08g08530
rosa_chinensis	RchiOBHm_Chr6g0307411 RchiOBHm_Chr6g0307511
rosa_laevigata	RLG00000010716
rosa_multiflora	Rmu_sc0000031.1_g000015 Rmu_sc0000031.1_g000022 Rmu_sc0005715.1_g000008
rosa_rugosa	Rorug06G0358500 Rorug06G0359200
rosa_samantha	Rh6CG484100 Rh6CG484900
rosa_wichuraiana	Rw6G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	149, 508, 683
AclWI	GGATC	6 cut(s)	441, 524, 537, 581, 702, 715
AcoI	YGGCCR	2 cut(s)	96, 595
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	4 cut(s)	116, 155, 604, 718
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	392, 845, 880
AluBI	AGCT	5 cut(s)	208, 239, 251, 257, 906
AluI	AGCT	5 cut(s)	208, 239, 251, 257, 906
Alw26I	GTCTC	2 cut(s)	64, 166
AlwI	GGATC	6 cut(s)	441, 524, 537, 581, 702, 715
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	96, 303, 501, 595
ApeKI	GCWGC	2 cut(s)	257, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	388
AsuC2I	CCSGG	3 cut(s)	100, 527, 599
AsuHPI	GGTGA	3 cut(s)	419, 550, 820
BaeGI	GKGCMC	1 cut(s)	659
BamHI	GGATCC	2 cut(s)	529, 707
BbsI	GAAGAC	2 cut(s)	391, 771
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	244, 370
BccI	CCATC	3 cut(s)	50, 622, 667
BciVI	GTATCC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	3 cut(s)	100, 527, 599
BcoDI	GTCTC	2 cut(s)	64, 166
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	258, 384
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	259, 385
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	100, 527, 599
BmiI	GGNNCC	4 cut(s)	7, 82, 531, 709
BmrFI	CCNGG	3 cut(s)	100, 527, 599
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	391, 771
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	2 cut(s)	300, 345
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	3 cut(s)	100, 527, 599
BsaWI	WCCGGW	2 cut(s)	116, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 155, 604, 718
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	198, 810
Bse3DI	GCAATG	1 cut(s)	312
BseGI	GGATG	3 cut(s)	349, 564, 565
BseLI	CCNNNNNNNGG	4 cut(s)	116, 155, 604, 718
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	5 cut(s)	177, 252, 291, 336, 764
BseNI	ACTGG	2 cut(s)	198, 810
BseSI	GKGCMC	1 cut(s)	659
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	244, 370
BseYI	CCCAGC	2 cut(s)	476, 548
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	98, 305, 503, 597
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	6 cut(s)	95, 99, 117, 156, 527, 598
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	4 cut(s)	116, 155, 604, 718
BsmAI	GTCTC	2 cut(s)	64, 166
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	4 cut(s)	98, 305, 503, 597
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	149, 508, 683
BspANI	GGCC	4 cut(s)	98, 305, 503, 597
BspCNI	CTCAG	5 cut(s)	176, 253, 292, 337, 765
BspLI	GGNNCC	4 cut(s)	7, 82, 531, 709
BspPI	GGATC	6 cut(s)	441, 524, 537, 581, 702, 715
BspQI	GCTCTTC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	198, 810
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	6 cut(s)	163, 261, 300, 345, 773, 900
BstF5I	GGATG	3 cut(s)	349, 564, 565
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	7 cut(s)	219, 436, 532, 589, 710, 862, 912
BstMAI	GTCTC	2 cut(s)	64, 166
BstMBI	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	98, 525, 597
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	244, 370
BstV2I	GAAGAC	2 cut(s)	391, 771
BstX2I	RGATCY	3 cut(s)	529, 586, 707
BstYI	RGATCY	3 cut(s)	529, 586, 707
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	98, 305, 503, 597
BtsCI	GGATG	3 cut(s)	349, 564, 565
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	149
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	4 cut(s)	289, 437, 639, 863
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	6 cut(s)	163, 261, 300, 345, 773, 900
DpnI	GATC	7 cut(s)	218, 435, 531, 588, 709, 861, 911
DpnII	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
EaeI	YGGCCR	2 cut(s)	96, 595
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	806
EclXI	CGGCCG	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	237
FaeI	CATG	4 cut(s)	292, 440, 642, 866
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	288, 436, 638, 862
FauI	CCCGC	3 cut(s)	156, 501, 690
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	2 cut(s)	258, 384
FokI	GGATG	3 cut(s)	336, 552, 571
Fsp4HI	GCNGC	2 cut(s)	258, 384
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	258, 384
GsaI	CCCAGC	2 cut(s)	480, 552
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	4 cut(s)	98, 305, 503, 597
HapII	CCGG	6 cut(s)	95, 99, 117, 156, 527, 598
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	292, 440, 642, 866
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	374, 611
HpaII	CCGG	6 cut(s)	95, 99, 117, 156, 527, 598
HphI	GGTGA	3 cut(s)	419, 550, 820
Hpy166II	GTNNAC	2 cut(s)	223, 328
Hpy188I	TCNGA	5 cut(s)	523, 534, 591, 620, 664
Hpy188III	TCNNGA	3 cut(s)	67, 514, 719
Hpy8I	GTNNAC	2 cut(s)	223, 328
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	2 cut(s)	529, 845
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	491, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
HpyF3I	CTNAG	6 cut(s)	163, 261, 300, 345, 773, 900
Hsp92II	CATG	4 cut(s)	292, 440, 642, 866
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
LguI	GCTCTTC	1 cut(s)	806
LmnI	GCTCC	2 cut(s)	236, 448
Lsp1109I	GCAGC	2 cut(s)	244, 370
LweI	GCATC	1 cut(s)	358
MalI	GATC	7 cut(s)	218, 435, 531, 588, 709, 861, 911
MboI	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
MboII	GAAGA	7 cut(s)	391, 422, 553, 776, 823, 868, 869
MflI	RGATCY	3 cut(s)	529, 586, 707
MhlI	GDGCHC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	9 cut(s)	120, 293, 295, 364, 595, 715, 768, 776, 780
MseI	TTAA	4 cut(s)	51, 75, 429, 690
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	6 cut(s)	95, 99, 117, 156, 527, 598
MspR9I	CCNGG	3 cut(s)	100, 527, 599
MwoI	GCNNNNNNNGC	3 cut(s)	257, 355, 488
NciI	CCSGG	3 cut(s)	100, 527, 599
NdeII	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
NlaIII	CATG	4 cut(s)	292, 440, 642, 866
NlaIV	GGNNCC	4 cut(s)	7, 82, 531, 709
NspI	RCATGY	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	374, 611
PflFI	GACNNNGTC	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	259, 385
PspFI	CCCAGC	2 cut(s)	476, 548
PspN4I	GGNNCC	4 cut(s)	7, 82, 531, 709
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	529, 586, 707
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	806
SaqAI	TTAA	4 cut(s)	51, 75, 429, 690
SatI	GCNGC	2 cut(s)	258, 384
Sau3AI	GATC	7 cut(s)	216, 433, 529, 586, 707, 859, 909
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	100, 527, 599
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	8 cut(s)	210, 241, 253, 259, 540, 606, 744, 908
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	331
SsiI	CCGC	3 cut(s)	149, 508, 683
SspI	AATATT	1 cut(s)	487
StyD4I	CCNGG	3 cut(s)	98, 525, 597
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	24, 66, 626, 702
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	374, 611
Tru1I	TTAA	4 cut(s)	51, 75, 429, 690
Tru9I	TTAA	4 cut(s)	51, 75, 429, 690
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	257, 383
TspDTI	ATGAA	3 cut(s)	27, 816, 919
TspGWI	ACGGA	3 cut(s)	24, 93, 720
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.