Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011899

Physical Location & Seq

Genomic Coordinates Forward (+)

25724909 .. 25726542

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTTCCAATGAAGTCTTACTCGATGTTTCTCCGTACGCGAGAGTACTTAAAGATGGAACAATCGAGAGACTTAACGGAACCCAAGTTGTTCCGGCCGGCCAGACTTACAAACCCAATATCACTGAAACCAGTCCAAAGCTTCCTTTGATAGTTTACTATCACGGTGGAGCTTTCTGCATAGCTTCAGCTGCTGAGCCACTCTACCACAACTGCCTCAACATGCTTGTTGCTGGGGCTAGAGCCATTGCTATTTCTGTTAGTTACAGATTAGCCCCTGAGCACCCACTGCCAATTGCCTACGAGGATTCATGGGCTGCGCTTGAATATGTCTTCGGTGGTGAAGAACTTGATGAGTGGGTCAAGGATCATGTTGATTTGAAGCGAGTGTTTTTGGTGGGATATAGTGTTGGGGCTAATATTGCACACCATTTGGCCTTGCGGGTCAAGAAGTCCAACCCGGATCCGAAGGTGAAGATCGTTGAGGAAGTCGATGGTGGATACATGGTTTTTGTGTGCCCATCGGAGAAAGGGGGTGATGACCGGCTTATTAACCCGTTTATCAACGGATCCCCAAGTCTGGAGGGGTTGGCTTGTGGTAAGGTGCTTGTTCTTGTTGTAGGAGAAGACATACTGAGGGACAGAGGGAGGCTTTACTATGATGAACTGGTGAAGAGCAACCGGGCAGGAAGCAAAGAGTTGATTGAAACAGAAGGGGAAGATCATGTGTTCCATATCTTCAATCCTAATGAAGAAAAGGCTAAGACCTTGATCAAGGATTTGGGTTCTTTCATAAATCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

269

Amino Acids

29.52

Weight (kDa)

5.42

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	43 - 158	9.4e-10	BD-FAE
Abhydrolase_3	PF07859	51 - 158	2.1e-32	alpha/beta hydrolase fold
Abhydrolase_3	PF07859	171 - 245	2.3e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47480
fragaria_vesca	FvH4_2g34680 FvH4_2g34730
malus_domestica	MD00G1000400.v1.1 MD08G1104000.v1.1 MD15G1085200.v1.1
prunus_persica	Prupe.1G439300_v2.0.a1
pyrus_communis	pycom08g08530
rosa_chinensis	RchiOBHm_Chr6g0307411 RchiOBHm_Chr6g0307511
rosa_laevigata	RLG00000010716
rosa_multiflora	Rmu_sc0000031.1_g000015 Rmu_sc0000031.1_g000022 Rmu_sc0005715.1_g000008
rosa_rugosa	Rorug06G0358500 Rorug06G0359200
rosa_samantha	Rh6CG484100 Rh6CG484900
rosa_wichuraiana	Rw6G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	5 cut(s)	375, 458, 471, 564, 577
AcoI	YGGCCR	2 cut(s)	96, 100
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	38, 48
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	326, 382, 707, 742
AluBI	AGCT	4 cut(s)	142, 173, 185, 191
AluI	AGCT	4 cut(s)	142, 173, 185, 191
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	5 cut(s)	375, 458, 471, 564, 577
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	96, 100, 435
ApeKI	GCWGC	2 cut(s)	191, 317
AspLEI	GCGC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	461, 683
AsuHPI	GGTGA	4 cut(s)	353, 484, 548, 682
BaeGI	GKGCMC	1 cut(s)	521
BamHI	GGATCC	2 cut(s)	463, 569
BbsI	GAAGAC	2 cut(s)	325, 633
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	178, 304
BccI	CCATC	3 cut(s)	50, 488, 529
BciVI	GTATCC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	2 cut(s)	461, 683
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	192, 318
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	2 cut(s)	193, 319
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	461, 683
BmiI	GGNNCC	4 cut(s)	7, 82, 465, 571
BmrFI	CCNGG	2 cut(s)	461, 683
BpiI	GAAGAC	2 cut(s)	325, 633
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	461, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	2 cut(s)	98, 543
Bse1I	ACTGG	2 cut(s)	132, 672
Bse3DI	GCAATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	186, 270, 626
BseNI	ACTGG	2 cut(s)	132, 672
BseSI	GKGCMC	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	178, 304
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	98, 102, 437
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	5 cut(s)	95, 99, 461, 544, 682
BsiWI	CGTACG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	3 cut(s)	98, 102, 437
Bsp1286I	GDGCHC	2 cut(s)	285, 521
Bsp143I	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	3 cut(s)	98, 102, 437
BspCNI	CTCAG	3 cut(s)	187, 271, 627
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	7, 82, 465, 571
BspPI	GGATC	5 cut(s)	375, 458, 471, 564, 577
BspQI	GCTCTTC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	98, 543
BsrI	ACTGG	2 cut(s)	132, 672
BssAI	RCCGGY	2 cut(s)	98, 543
BssMI	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	4 cut(s)	195, 279, 635, 762
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	6 cut(s)	370, 466, 480, 572, 724, 774
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 289, 422
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	459, 681
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	178, 304
BstV2I	GAAGAC	2 cut(s)	325, 633
BstX2I	RGATCY	2 cut(s)	463, 569
BstYI	RGATCY	2 cut(s)	463, 569
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	98, 102, 437
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	123, 287
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	2 cut(s)	98, 543
Csp6I	GTAC	2 cut(s)	37, 47
CviAII	CATG	5 cut(s)	223, 312, 371, 505, 725
CviQI	GTAC	2 cut(s)	37, 47
DdeI	CTNAG	4 cut(s)	195, 279, 635, 762
DpnI	GATC	6 cut(s)	369, 465, 479, 571, 723, 773
DpnII	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
EaeI	YGGCCR	2 cut(s)	96, 100
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EclXI	CGGCCG	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	171
FaeI	CATG	5 cut(s)	226, 315, 374, 508, 728
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	5 cut(s)	222, 311, 370, 504, 724
FauI	CCCGC	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	2 cut(s)	192, 318
FseI	GGCCGGCC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	192, 318
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	192, 318
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	98, 102, 437
HapII	CCGG	5 cut(s)	95, 99, 461, 544, 682
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	5 cut(s)	226, 315, 374, 508, 728
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	5 cut(s)	95, 99, 461, 544, 682
HphI	GGTGA	4 cut(s)	353, 484, 548, 682
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	468, 526
Hpy188III	TCNNGA	3 cut(s)	67, 448, 581
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	463, 707
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	180, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 289, 422
HpyF3I	CTNAG	4 cut(s)	195, 279, 635, 762
Hsp92II	CATG	5 cut(s)	226, 315, 374, 508, 728
HspAI	GCGC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	178, 304
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	6 cut(s)	369, 465, 479, 571, 723, 773
MboI	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
MboII	GAAGA	8 cut(s)	325, 356, 487, 638, 685, 730, 731, 764
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	2 cut(s)	463, 569
MhlI	GDGCHC	2 cut(s)	285, 521
MluCI	AATT	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	227, 298, 478, 577, 630, 638, 642
MroNI	GCCGGC	1 cut(s)	98
MseI	TTAA	3 cut(s)	51, 75, 552
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	5 cut(s)	95, 99, 461, 544, 682
MspR9I	CCNGG	2 cut(s)	461, 683
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	191, 289, 422
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	2 cut(s)	461, 683
NdeII	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	5 cut(s)	226, 315, 374, 508, 728
NlaIV	GGNNCC	4 cut(s)	7, 82, 465, 571
NspI	RCATGY	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	308
Pfl23II	CGTACG	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	193, 319
PspFI	CCCAGC	1 cut(s)	233
PspLI	CGTACG	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	7, 82, 465, 571
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	463, 569
PvuII	CAGCTG	1 cut(s)	191
RigI	GGCCGGCC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	38, 48
RsaNI	GTAC	2 cut(s)	37, 47
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	51, 75, 552
SatI	GCNGC	2 cut(s)	192, 318
Sau3AI	GATC	6 cut(s)	367, 463, 477, 569, 721, 771
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	461, 683
SduI	GDGCHC	2 cut(s)	285, 521
SetI	ASST	7 cut(s)	144, 175, 187, 193, 474, 606, 770
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	1 cut(s)	442
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	459, 681
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	24, 66, 492
TasI	AATT	1 cut(s)	294
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	51, 75, 552
Tru9I	TTAA	3 cut(s)	51, 75, 552
TscAI	CASTG	2 cut(s)	130, 294
TseI	GCWGC	2 cut(s)	191, 317
TspDTI	ATGAA	5 cut(s)	27, 300, 678, 765, 781
TspGWI	ACGGA	3 cut(s)	24, 93, 582
TspRI	CASTG	2 cut(s)	130, 294
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.