Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Reverse (-)

17704132 .. 17706460

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAATATAAGTAGAACAGAATTCGCAAACTGTAAAACCCTTATAAATCATAAAGAAGAAGTCGAAGAAGTCGAGAAAAAGATGGAAATAGAAATAAGGAGAGGTCCATGGACTGTGGAAGAAGACATGAAGCTCGTCAGTTACATTTCTCTTCACGGTGAAGGAAGATGGAACTCCCTCTCTCGTTCTGCTGGACTGAATAGAACGGGGAAAAGTTGCAGATTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCGTGGAGACATATCCCTTCAAGAACAATTTATCATCCTTGAACTCCATTCTCGTTGGGGAAATCGGTGGTCAAAGATTGCTCAACATTTACCGGGAAGAACAGATAACGAGATAAAGAATTATTGGAGAACACGTGTTCAAAAGCATGCAAAACTTCTAAAATGTGACGTGAACAGCAAGCAATTCAAAGACACCATCAAACATCTCTGGATGCCTCGTCTCATCGAGAGAATCGCCGCCACTCAAAGTGTCCAATTTACCTCTAACCACTACTCGCCTGAGAACTCCAGCGTCGCCACCGCCACGTCATCAACGTCGTCGTCTGAGGCTGTGAGATCGAGTTTCTACGGTGGTGATCAGGTGGAATTTGGAACGTTGGATCATATGACAAATGGTGGTTATTGGTTCAACGGCGGAGATACGTTTGAAACTTTGTGTAGTTTTGACGAGCTCAACAAGTGGCTCATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

243

Amino Acids

28.29

Weight (kDa)

8.84

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	34 - 81	8.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	37 - 94	6.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	87 - 130	1.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	93 - 132	3.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AciI	CCGC	5 cut(s)	226, 256, 495, 558, 672
AclI	AACGTT	1 cut(s)	632
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	20, 623
AcvI	CACGTG	1 cut(s)	392
AflIII	ACRYGT	2 cut(s)	389, 391
AgsI	TTSAA	6 cut(s)	278, 299, 398, 445, 667, 686
AjiI	CACGTC	2 cut(s)	427, 564
AluBI	AGCT	2 cut(s)	133, 709
AluI	AGCT	2 cut(s)	133, 709
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	258, 482
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	20, 623
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	170, 623
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	711
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	711
BccI	CCATC	3 cut(s)	76, 162, 461
BceAI	ACGGC	2 cut(s)	243, 685
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	258, 482
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	104
BmgBI	CACGTC	2 cut(s)	427, 564
BmgT120I	GGNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	107, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
BseDI	CCNNGG	2 cut(s)	107, 259
BseGI	GGATG	2 cut(s)	291, 474
BseMII	CTCAG	2 cut(s)	528, 573
BseX3I	CGGCCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	244, 248, 350
BsmAI	GTCTC	2 cut(s)	258, 482
BsmBI	CGTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	593, 613, 637
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	5 cut(s)	226, 256, 495, 558, 672
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	2 cut(s)	529, 574
BspPI	GGATC	1 cut(s)	645
BssECI	CCNNGG	2 cut(s)	107, 259
BssMI	GATC	3 cut(s)	593, 613, 637
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	5 cut(s)	32, 115, 158, 608, 729
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	405, 437
BstDEI	CTNAG	2 cut(s)	537, 582
BstDSI	CCRYGG	2 cut(s)	107, 259
BstF5I	GGATG	2 cut(s)	291, 474
BstKTI	GATC	3 cut(s)	596, 616, 640
BstMAI	GTCTC	2 cut(s)	258, 482
BstMBI	GATC	3 cut(s)	593, 613, 637
BstMCI	CGRYCG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	2 cut(s)	107, 259
BtrI	CACGTC	2 cut(s)	427, 564
BtsCI	GGATG	2 cut(s)	291, 474
Cac8I	GCNNGC	2 cut(s)	405, 437
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	538
CviAII	CATG	3 cut(s)	108, 127, 404
CviJI	RGCY	6 cut(s)	133, 232, 247, 587, 709, 721
CviKI_1	RGCY	6 cut(s)	133, 232, 247, 587, 709, 721
DdeI	CTNAG	2 cut(s)	537, 582
DpnI	GATC	3 cut(s)	595, 615, 639
DpnII	GATC	3 cut(s)	593, 613, 637
EaeI	YGGCCR	1 cut(s)	245
EagI	CGGCCG	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	2 cut(s)	245, 687
Ecl136II	GAGCTC	1 cut(s)	709
EclXI	CGGCCG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	711
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	104
Eco52I	CGGCCG	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	709
Eco72I	CACGTG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	3 cut(s)	111, 130, 407
FatI	CATG	3 cut(s)	107, 126, 403
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	2 cut(s)	278, 481
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	3 cut(s)	244, 248, 350
HgaI	GACGC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	111, 130, 407
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	3 cut(s)	244, 248, 350
HphI	GGTGA	2 cut(s)	170, 623
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	73, 278, 466, 484
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	3 cut(s)	554, 577, 580
HpyAV	CCTTC	2 cut(s)	155, 284
HpyCH4III	ACNGT	5 cut(s)	32, 115, 158, 608, 729
HpyCH4IV	ACGT	6 cut(s)	391, 426, 563, 572, 632, 680
HpyCH4V	TGCA	2 cut(s)	219, 407
HpyF3I	CTNAG	2 cut(s)	537, 582
HpySE526I	ACGT	6 cut(s)	391, 426, 563, 572, 632, 680
Hsp92II	CATG	3 cut(s)	111, 130, 407
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	593, 613, 637
LpnPI	CCDG	8 cut(s)	177, 257, 261, 363, 451, 549, 559, 602
LweI	GCATC	1 cut(s)	459
MaeII	ACGT	6 cut(s)	391, 426, 563, 572, 632, 680
MaeIII	GTNAC	2 cut(s)	140, 422
MalI	GATC	3 cut(s)	595, 615, 639
MboI	GATC	3 cut(s)	593, 613, 637
MboII	GAAGA	7 cut(s)	68, 77, 131, 134, 143, 177, 366
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	7 cut(s)	20, 235, 284, 376, 440, 512, 623
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	5 cut(s)	95, 188, 483, 529, 577
MspI	CCGG	3 cut(s)	244, 248, 350
MspR9I	CCNGG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	3 cut(s)	593, 613, 637
NlaIII	CATG	3 cut(s)	111, 130, 407
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 569
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	496
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	711
Psp1406I	AACGTT	1 cut(s)	632
PspCI	CACGTG	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	711
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	593, 613, 637
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	104
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	7 cut(s)	20, 235, 284, 376, 440, 512, 623
SsiI	CCGC	5 cut(s)	226, 256, 495, 558, 672
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	5 cut(s)	32, 115, 158, 608, 729
TaiI	ACGT	6 cut(s)	394, 429, 566, 575, 635, 683
TaqI	TCGA	4 cut(s)	63, 72, 483, 596
TasI	AATT	7 cut(s)	20, 235, 284, 376, 440, 512, 623
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	17, 143
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	2 cut(s)	20, 623
XceI	RCATGY	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.