Rh4BG272300
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010023
Physical Location & Seq
Reverse (-)
44599010 .. 44601060
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG272300.1

Sequence Viewer

Length: 1032 bp
ATGGATGTCAAACCAGGAAGGGTTTCGGACACTATTAGAAACAGTTCTGAAGAAGACGAAGATGCTATGATGATGGACCTGAGAAGAGGGCCATGGACGGTTGAGGAAGACCTTGCTCTCATGAATTACATTGCTAACCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTGTGCAGGTCTGAAAAGAACTGGAAAGAGCTGCAGATTAAGGTGGCTCAACTATCTCCGACCCGACGTTCGACGTGGCAACATCACTCTCGAAGAACAGCTTCTCATTCTTGAGCTTCATTCTCGCTGGGGCAACCGATGGTCCAAAATTGCACAGCACTTGCCCGGAAGGACTGACAATGAAATCAAAAACTACTGGAGGACTCGCGTGCAAAAACACGCAAAGCAGCTCAAGTGTGACGTCAACAGCAAGCAGTTCAAGGACACCATGCGCTACCTCTGGATGCCGAGATTGGTCGAGAGAATTCAAGCCGCCGCGTCCGCCTCCACCGCCACCACCGGAGCCTCTTCTTCTATCACAACCGCCGCGGCCAACACTTATCATTTCAACAATAACAATAACAGCTTCCAAACCGCCGCGGGAGCAGGACACGTCGCTTTACAACAGGCAACGCTCATTGGCAATAACAATGACTTGGCCGGAAGTTACACCACTCCGGAAAACTCCAGCACTGCGGCGTCATCGGACTCGTTTGGGACTCAGGTCTCGCCGGTGTCGGAGCTAACCGACTATTACAGTAATATGTCGGTTAACAATAATAAACCTAGTAGTCAGGCTCTGGATTACTTCCAAGCCACCAATCCTCATCACCAAGTCGGTTATCATGATTCCATGACTAGTCCATCTGGTTACTCATTCAATCAAGGAGGACTAAACAGCCATAGCTTTCAAGCTGCTTCGGCGCCGGAGCAAAACAACAACGGTCAGTGGGGCATGGACGGTGGGGACTTTTCGGACAATCTGTGGAACGTTGAGGAATCCGACATGTGGTTCTTACAGCAGCAACTCGGCAATATTTGA

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

6.2

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 76 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 89 2.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 125 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 86 - 128 4.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca FvH4_4g20750 FvH4_4g20750
malus_domestica MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica Prupe.1G111700_v2.0.a1
pyrus_communis pycom13g12760 pycom16g12660
rosa_chinensis RchiOBHm_Chr4g0426181
rosa_laevigata RLG00000007312
rosa_multiflora Rmu_sc0000730.1_g000023
rosa_roxburghii Rroxscaffold_5G00368200
rosa_rugosa Rorug04G0209500
rosa_samantha Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana Rw4G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 913
AccII CGCG 4 cut(s) 378, 488, 539, 590
AccIII TCCGGA 1 cut(s) 667
AclI AACGTT 1 cut(s) 981
AcoI YGGCCR 2 cut(s) 540, 648
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 3 cut(s) 411, 689, 914
AfiI CCNNNNNNNGG 1 cut(s) 999
AflIII ACRYGT 2 cut(s) 601, 996
AgsI TTSAA 5 cut(s) 430, 479, 559, 871, 902
AhlI ACTAGT 1 cut(s) 848
AjiI CACGTC 2 cut(s) 245, 604
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 8 cut(s) 201, 271, 286, 400, 576, 733, 897, 905
AluI AGCT 8 cut(s) 201, 271, 286, 400, 576, 733, 897, 905
Alw26I GTCTC 1 cut(s) 721
AlwNI CAGNNNCTG 1 cut(s) 790
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 3 cut(s) 89, 540, 648
ApeKI GCWGC 4 cut(s) 201, 397, 905, 1012
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 3 cut(s) 22, 43, 270
AspLEI GCGC 2 cut(s) 444, 916
AspS9I GGNCC 3 cut(s) 76, 89, 312
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 812
AvaII GGWCC 2 cut(s) 76, 312
BanI GGYRCC 1 cut(s) 913
BbsI GAAGAC 2 cut(s) 60, 114
BbvI GCAGC 4 cut(s) 188, 409, 892, 1024
BccI CCATC 3 cut(s) 67, 303, 862
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 721
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 2 cut(s) 777, 849
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 917
BfuAI ACCTGC 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 15, 336
Bme18I GGWCC 2 cut(s) 76, 312
BmgBI CACGTC 2 cut(s) 245, 604
BmgT120I GGNCC 3 cut(s) 76, 89, 312
BmiI GGNNCC 2 cut(s) 514, 915
BmrFI CCNGG 2 cut(s) 15, 336
BmsI GCATC 2 cut(s) 52, 444
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 60, 114
BpmI CTGGAG 2 cut(s) 388, 661
BpuEI CTTGAG 2 cut(s) 302, 386
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 3 cut(s) 411, 689, 914
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 4 cut(s) 92, 139, 537, 588
BsaWI WCCGGW 2 cut(s) 509, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 999
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 196, 371
Bse3DI GCAATG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 4 cut(s) 92, 139, 537, 588
BseGI GGATG 2 cut(s) 10, 459
BseLI CCNNNNNNNGG 1 cut(s) 999
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 71, 725
BseNI ACTGG 2 cut(s) 196, 371
BseXI GCAGC 4 cut(s) 188, 409, 892, 1024
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 4 cut(s) 378, 488, 539, 590
BshFI GGCC 3 cut(s) 91, 542, 650
BshNI GGYRCC 1 cut(s) 913
BsiSI CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
BslFI GGGAC 2 cut(s) 721, 971
BslI CCNNNNNNNGG 1 cut(s) 999
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 721, 971
BsnI GGCC 3 cut(s) 91, 542, 650
Bso31I GGTCTC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 92
BspANI GGCC 3 cut(s) 91, 542, 650
BspCNI CTCAG 2 cut(s) 72, 724
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 4 cut(s) 378, 488, 539, 590
BspHI TCATGA 2 cut(s) 120, 835
BspLI GGNNCC 2 cut(s) 514, 915
BspMAI CTGCAG 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 913
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 196, 371
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 92, 139, 537, 588
BssNI GRCGYC 3 cut(s) 411, 689, 914
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 5 cut(s) 44, 100, 749, 935, 953
Bst6I CTCTTC 2 cut(s) 79, 523
BstACI GRCGYC 3 cut(s) 411, 689, 914
BstC8I GCNNGC 3 cut(s) 169, 380, 422
BstDEI CTNAG 2 cut(s) 80, 711
BstDSI CCRYGG 4 cut(s) 92, 139, 537, 588
BstF5I GGATG 2 cut(s) 10, 459
BstFNI CGCG 4 cut(s) 378, 488, 539, 590
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 2 cut(s) 444, 916
BstMAI GTCTC 1 cut(s) 721
BstMWI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 1000
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 13, 334
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 4 cut(s) 378, 488, 539, 590
BstV1I GCAGC 4 cut(s) 188, 409, 892, 1024
BstV2I GAAGAC 2 cut(s) 60, 114
BsuRI GGCC 3 cut(s) 91, 542, 650
BtgI CCRYGG 4 cut(s) 92, 139, 537, 588
BtrI CACGTC 2 cut(s) 245, 604
BtsCI GGATG 2 cut(s) 10, 459
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 681, 944
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 169, 380, 422
CaiI CAGNNNCTG 1 cut(s) 790
CciI TCATGA 2 cut(s) 120, 835
CfoI GCGC 2 cut(s) 444, 916
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 76, 89, 312
Cfr42I CCGCGG 2 cut(s) 540, 591
CseI GACGC 2 cut(s) 477, 678
CviAII CATG 7 cut(s) 93, 121, 439, 836, 844, 946, 997
DdeI CTNAG 2 cut(s) 80, 711
DinI GGCGCC 1 cut(s) 915
EaeI YGGCCR 2 cut(s) 540, 648
Eam1104I CTCTTC 2 cut(s) 79, 523
EarI CTCTTC 2 cut(s) 79, 523
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 76, 312
Eco57I CTGAAG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 915
EheI GGCGCC 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 2 cut(s) 721, 971
FatI CATG 7 cut(s) 92, 120, 438, 835, 843, 945, 996
FauI CCCGC 1 cut(s) 583
FokI GGATG 2 cut(s) 17, 466
FspBI CTAG 2 cut(s) 777, 849
GlaI GCGC 2 cut(s) 443, 915
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 388, 661
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 3 cut(s) 91, 542, 650
HapII CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
HgaI GACGC 2 cut(s) 477, 678
HhaI GCGC 2 cut(s) 444, 916
Hin1I GRCGYC 3 cut(s) 411, 689, 914
Hin1II CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
Hin6I GCGC 2 cut(s) 442, 914
HinP1I GCGC 2 cut(s) 442, 914
HincII GTYRAC 2 cut(s) 415, 763
HindII GTYRAC 2 cut(s) 415, 763
HinfI GANTC 5 cut(s) 373, 698, 709, 839, 989
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 2 cut(s) 415, 763
Hpy188I TCNGA 8 cut(s) 28, 49, 183, 230, 697, 730, 967, 994
Hpy188III TCNNGA 8 cut(s) 121, 260, 281, 451, 469, 668, 791, 836
Hpy8I GTNNAC 2 cut(s) 415, 763
Hpy99I CGWCG 3 cut(s) 239, 246, 608
HpyAV CCTTC 3 cut(s) 12, 140, 333
HpyCH4III ACNGT 5 cut(s) 44, 100, 749, 935, 953
HpyCH4IV ACGT 5 cut(s) 237, 244, 411, 603, 981
HpyCH4V TGCA 4 cut(s) 176, 204, 323, 382
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
HpyF3I CTNAG 2 cut(s) 80, 711
HpySE526I ACGT 5 cut(s) 237, 244, 411, 603, 981
Hsp92I GRCGYC 3 cut(s) 411, 689, 914
Hsp92II CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
HspAI GCGC 2 cut(s) 442, 914
KasI GGCGCC 1 cut(s) 913
Kpn2I TCCGGA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 763
KspI CCGCGG 2 cut(s) 540, 591
LmnI GCTCC 4 cut(s) 512, 593, 730, 919
Lsp1109I GCAGC 4 cut(s) 188, 409, 892, 1024
LweI GCATC 2 cut(s) 52, 444
MaeI CTAG 2 cut(s) 777, 849
MaeII ACGT 5 cut(s) 237, 244, 411, 603, 981
MaeIII GTNAC 3 cut(s) 407, 656, 860
MboII GAAGA 8 cut(s) 62, 65, 71, 96, 119, 275, 510, 513
MluCI AATT 3 cut(s) 124, 318, 474
Mly113I GGCGCC 1 cut(s) 914
MlyI GAGTC 3 cut(s) 367, 692, 703
MmeI TCCRAC 3 cut(s) 253, 708, 1017
MnlI CCTC 9 cut(s) 80, 97, 363, 458, 505, 526, 825, 872, 979
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 3 cut(s) 22, 43, 270
MseI TTAA 2 cut(s) 209, 762
MspA1I CMGCKG 2 cut(s) 539, 590
MspI CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
MspR9I CCNGG 2 cut(s) 15, 336
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 4 cut(s) 378, 488, 539, 590
MwoI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
NarI GGCGCC 1 cut(s) 914
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 92
NlaIII CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
NlaIV GGNNCC 2 cut(s) 514, 915
NmeAIII GCCGAG 2 cut(s) 483, 999
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 1000
PagI TCATGA 2 cut(s) 120, 835
PciI ACATGT 1 cut(s) 996
PdmI GAANNNNTTC 3 cut(s) 22, 43, 270
PfeI GAWTC 2 cut(s) 839, 989
PleI GAGTC 3 cut(s) 367, 692, 703
PluTI GGCGCC 1 cut(s) 917
PpsI GAGTC 3 cut(s) 367, 692, 703
PscI ACATGT 1 cut(s) 996
PshAI GACNNNNGTC 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 981
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 514, 915
PspPI GGNCC 3 cut(s) 76, 89, 312
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 790
SacII CCGCGG 2 cut(s) 540, 591
SaqAI TTAA 2 cut(s) 209, 762
Sau96I GGNCC 3 cut(s) 76, 89, 312
SchI GAGTC 3 cut(s) 367, 692, 703
ScrFI CCNGG 2 cut(s) 15, 336
SfaNI GCATC 2 cut(s) 52, 444
SfcI CTRYAG 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 915
Sfr303I CCGCGG 2 cut(s) 540, 591
SgrAI CRCCGGYG 1 cut(s) 721
SgrBI CCGCGG 2 cut(s) 540, 591
SinI GGWCC 2 cut(s) 76, 312
SmlI CTYRAG 2 cut(s) 281, 401
SmoI CTYRAG 2 cut(s) 281, 401
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 3 cut(s) 124, 318, 474
SspDI GGCGCC 1 cut(s) 913
SspI AATATT 1 cut(s) 1027
SspMI CTAG 2 cut(s) 777, 849
StyD4I CCNGG 2 cut(s) 13, 334
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 5 cut(s) 44, 100, 749, 935, 953
TaiI ACGT 5 cut(s) 240, 247, 414, 606, 984
TaqI TCGA 3 cut(s) 241, 261, 468
TasI AATT 3 cut(s) 124, 318, 474
TauI GCSGC 6 cut(s) 485, 488, 539, 542, 590, 689
TfiI GAWTC 2 cut(s) 839, 989
Tru1I TTAA 2 cut(s) 209, 762
Tru9I TTAA 2 cut(s) 209, 762
TscAI CASTG 2 cut(s) 688, 944
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 201, 397, 905, 1012
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 137, 278, 366
TspRI CASTG 2 cut(s) 688, 944
VpaK11BI GGWCC 2 cut(s) 76, 312
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 1000
XmnI GAANNNNTTC 3 cut(s) 22, 43, 270
XspI CTAG 2 cut(s) 777, 849
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.