Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Forward (+)

8923251 .. 8925194

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATGAAGCGGATGGATCAGATGATGGACCTGCGAAGAGGTCCTTGGACGGTTGAGGAGGACCTAGCTCTCATGAATTACATTGCTAACCACGGCGAAGGCCGCTGGAACTCCCTCGCTCGCAGCGCAGGTCTGAAAAGAACCGGAAAGAGCTGCAGATTACGGTGGCTCAACTATCTCCGCCCCGATGTCCGTCGTGGCAACATCACCCTTGAAGAACAGCTTCTGATTCTTGAGCTTCATTCTCGCTGGGGTAACAGATGGTCAAAAATTGCACAGCACTTGCCAGGAAGGACTGACAATGAGATAAAAAACTATTGGAGGACCCGTGTCCAAAAACACGCCAAGCAACTCAAATGTGATGTCAACAGCAAGCAGTTCAAGGACACCATGAGGTACCTCTGGATGCCTAGATTGGTTGAAAGAATTCAAGCCGCCGCGGCTGCCTCCACCACCACCAACGCCACCGCAACAGATTCCTCTATTGCCGCCCCGGCTACCTCTCACCACTTCAGCAACAACTTCCAGTCTTCAGCACAAATGTTATTACAGCCAAGTCATCATCATCACTTCGGGGTTTCCTCACAGTCACAACTCACACCGAGTTACAATACCCCGGAGAATTCTAGTACGGCAGCCTCATCGGACTCGTTTGGGACTCAGGTGTCACCTGTTTCCGACCTCACTGATTATTACACCCCTACTGCTGCTGCTGCTGCTATCTCGGTTAACAATAACCCTACCCCGGATAATAGTTACTTCGTCCAAGACAATCATCAAGTTGGTAATTACGACAACTACTCGGGGTCCTTCGGTAATCAAGGGTTGGTATTAGAACATTTCCAAACCATGGACGAGCAAAACAACAATTATCAGTGGGGCACTGTGGAAGGCGGGGACATATCGGACAATTGGTGGAATGTTGAGGACATGTGGTTCTTACAACAGCAGCTCAGCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

36.58

Weight (kDa)

6.63

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 73	9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 112	4.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc36I	ACCTGC	2 cut(s)	39, 119
Acc65I	GGTACC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	850
AccII	CGCG	1 cut(s)	440
AciI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	426, 622
AcuI	CTGAAG	2 cut(s)	496, 516
AfaI	GTAC	2 cut(s)	398, 631
AfiI	CCNNNNNNNGG	2 cut(s)	745, 850
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	4 cut(s)	215, 382, 422, 431
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AloI	GAACNNNNNNTCC	2 cut(s)	920, 952
AluBI	AGCT	5 cut(s)	68, 153, 223, 238, 952
AluI	AGCT	5 cut(s)	68, 153, 223, 238, 952
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	802
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	426, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	2 cut(s)	222, 426
Asp718I	GGTACC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
AsuC2I	CCSGG	3 cut(s)	494, 617, 746
AsuHPI	GGTGA	3 cut(s)	199, 497, 660
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	5 cut(s)	28, 41, 61, 324, 807
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BccI	CCATC	3 cut(s)	7, 19, 255
BceAI	ACGGC	2 cut(s)	109, 648
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	3 cut(s)	494, 617, 746
BfaI	CTAG	3 cut(s)	65, 411, 627
BfmI	CTRYAG	1 cut(s)	154
BfuAI	ACCTGC	2 cut(s)	39, 119
BglI	GCCNNNNNGGC	2 cut(s)	440, 494
BlpI	GCTNAGC	1 cut(s)	953
Bme1390I	CCNGG	4 cut(s)	288, 494, 617, 746
Bme18I	GGWCC	5 cut(s)	28, 41, 61, 324, 807
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
BmiI	GGNNCC	3 cut(s)	326, 398, 808
BmrFI	CCNGG	4 cut(s)	288, 494, 617, 746
BmsI	GCATC	1 cut(s)	396
BoxI	GACNNNNGTC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	953
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	3 cut(s)	494, 617, 746
BsaJI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 850
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BseGI	GGATG	2 cut(s)	18, 411
BseLI	CCNNNNNNNGG	2 cut(s)	745, 850
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	4 cut(s)	144, 494, 617, 746
BslFI	GGGAC	2 cut(s)	670, 911
BslI	CCNNNNNNNGG	2 cut(s)	745, 850
BsmFI	GGGAC	2 cut(s)	670, 911
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	1 cut(s)	953
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	673, 966
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	326, 398, 808
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	2 cut(s)	39, 119
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	44, 849
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	52, 165, 588, 886
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	121, 374
BstDEI	CTNAG	2 cut(s)	660, 953
BstDSI	CCRYGG	3 cut(s)	91, 438, 849
BstF5I	GGATG	2 cut(s)	18, 411
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	934
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	4 cut(s)	286, 492, 615, 744
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BstV2I	GAAGAC	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	91, 438, 849
BtsCI	GGATG	2 cut(s)	18, 411
BtsIMutI	CAGTG	3 cut(s)	684, 881, 882
BveI	ACCTGC	2 cut(s)	39, 119
Cac8I	GCNNGC	2 cut(s)	121, 374
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
Cfr42I	CCGCGG	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	397, 630
CviAII	CATG	4 cut(s)	73, 391, 850, 931
CviQI	GTAC	2 cut(s)	397, 630
DdeI	CTNAG	2 cut(s)	660, 953
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	44, 849
Eco47I	GGWCC	5 cut(s)	28, 41, 61, 324, 807
Eco57I	CTGAAG	2 cut(s)	496, 516
Eco88I	CYCGRG	1 cut(s)	802
EcoO109I	RGGNCCY	4 cut(s)	41, 61, 324, 807
EcoRI	GAATTC	2 cut(s)	426, 622
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	44, 849
ErhI	CCWWGG	2 cut(s)	44, 849
FaeI	CATG	4 cut(s)	76, 394, 853, 934
FaiI	YATR	5 cut(s)	74, 392, 851, 902, 932
FalI	AAGNNNNNCTT	4 cut(s)	28, 60, 207, 239
FaqI	GGGAC	2 cut(s)	670, 911
FatI	CATG	4 cut(s)	72, 390, 849, 930
FauI	CCCGC	1 cut(s)	887
FokI	GGATG	2 cut(s)	25, 418
FspBI	CTAG	3 cut(s)	65, 411, 627
GlaI	GCGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	4 cut(s)	144, 494, 617, 746
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	76, 394, 853, 934
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	367, 730
HindII	GTYRAC	2 cut(s)	367, 730
HinfI	GANTC	4 cut(s)	229, 476, 647, 658
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	4 cut(s)	144, 494, 617, 746
HphI	GGTGA	3 cut(s)	199, 497, 660
Hpy166II	GTNNAC	2 cut(s)	367, 730
Hpy188I	TCNGA	6 cut(s)	21, 135, 228, 646, 679, 907
Hpy188III	TCNNGA	3 cut(s)	73, 233, 403
Hpy8I	GTNNAC	2 cut(s)	367, 730
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	4 cut(s)	92, 285, 820, 884
HpyCH4III	ACNGT	4 cut(s)	52, 165, 588, 886
HpyCH4V	TGCA	2 cut(s)	156, 275
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
HpyF3I	CTNAG	2 cut(s)	660, 953
Hsp92II	CATG	4 cut(s)	76, 394, 853, 934
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	730
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	16
Lsp1109I	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	3 cut(s)	65, 411, 627
MaeIII	GTNAC	5 cut(s)	254, 588, 605, 666, 755
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	48, 227, 522
MfeI	CAATTG	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
MlyI	GAGTC	2 cut(s)	641, 652
MmeI	TCCRAC	1 cut(s)	702
MroXI	GAANNNNTTC	2 cut(s)	222, 426
MseI	TTAA	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	105, 440
MspI	CCGG	4 cut(s)	144, 494, 617, 746
MspR9I	CCNGG	4 cut(s)	288, 494, 617, 746
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
NciI	CCSGG	3 cut(s)	494, 617, 746
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	76, 394, 853, 934
NlaIV	GGNNCC	3 cut(s)	326, 398, 808
NmuCI	GTSAC	2 cut(s)	588, 666
NspI	RCATGY	1 cut(s)	934
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	930
PdmI	GAANNNNTTC	2 cut(s)	222, 426
PfeI	GAWTC	2 cut(s)	229, 476
PflMI	CCANNNNNTGG	1 cut(s)	850
PleI	GAGTC	2 cut(s)	641, 652
PpsI	GAGTC	2 cut(s)	641, 652
PpuMI	RGGWCCY	4 cut(s)	41, 61, 324, 807
PscI	ACATGT	1 cut(s)	930
PshAI	GACNNNNGTC	1 cut(s)	329
Psp5II	RGGWCCY	4 cut(s)	41, 61, 324, 807
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	326, 398, 808
PspPI	GGNCC	5 cut(s)	28, 41, 61, 324, 807
PspPPI	RGGWCCY	4 cut(s)	41, 61, 324, 807
PstI	CTGCAG	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	398, 631
RsaNI	GTAC	2 cut(s)	397, 630
SacII	CCGCGG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	729
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
SchI	GAGTC	2 cut(s)	641, 652
ScrFI	CCNGG	4 cut(s)	288, 494, 617, 746
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SinI	GGWCC	5 cut(s)	28, 41, 61, 324, 807
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
SsiI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
SspMI	CTAG	3 cut(s)	65, 411, 627
StyD4I	CCNGG	4 cut(s)	286, 492, 615, 744
StyI	CCWWGG	2 cut(s)	44, 849
TaaI	ACNGT	4 cut(s)	52, 165, 588, 886
TasI	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
TauI	GCSGC	5 cut(s)	105, 437, 440, 443, 491
TfiI	GAWTC	2 cut(s)	229, 476
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	3 cut(s)	691, 881, 889
TseFI	GTSAC	2 cut(s)	588, 666
Tsp45I	GTSAC	2 cut(s)	588, 666
TspDTI	ATGAA	3 cut(s)	20, 89, 230
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	3 cut(s)	691, 881, 889
Van91I	CCANNNNNTGG	1 cut(s)	850
VpaK11BI	GGWCC	5 cut(s)	28, 41, 61, 324, 807
XapI	RAATTY	2 cut(s)	426, 622
XceI	RCATGY	1 cut(s)	934
XmnI	GAANNNNTTC	2 cut(s)	222, 426
XspI	CTAG	3 cut(s)	65, 411, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.