Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Forward (+)

11600669 .. 11602793

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1148200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGACATGGCGAAAGGAACCAGAGGCTGCAACAGCCCATCGTCACAAGTCTCGGCAGAAATCCTCAATGAAACTGGCTCTCATGATCATGAGGAAGCTGAGGATCAGATGATGGACCTGCGAAGAGGGCCTTGGACTGTTGAGGAAGACCTAGCTCTCATGAATTACATTGCTAACCACGGCGAAGGCCGCTGGAACTCCCTCGCTCGCTGCGCAGGTCTGAAAAGAACTGGAAAGAGCTGCAGATTGCGGTGGCTCAACTATCTCCGCCCTGATGTCCGTCGTGGTAACATCAGTCTTGAAGAACAGCTTTTGATTCTGGAACTTCATTCTCGCTGGGGTAACAGATGGTCGAAAATTGCACAGCACTTGCCAGGAAGGACTGACAATGAGATAAAAAACTATTGGAGGACCCGTGTCCAAAAACATGCCAAGCAACTCAAATGTGATGTCAACAGCAAGCAGTTCAAGGACACCATGAGATACCTCTGGATGCCTAGATTGGTCGAAAGAATCCAAGCCGCCGCGGCCACCTCCACTGCCACTAACGCCACCGCCACTAATTCCTCTATCGCTGCCCCAGCTACCACTCACCACTTCAACAACAACATTAACAACAACTTCCAATCATCAGCACAAATGTTATTACAGCCAAGTCACCATCACTTCGGGGTTTCATCACACTCCCAACTCACACCGAGTTACAGTACCCCGGAGAATTCTAGTACGGCGGCCTCATCGGACTCGTTTGGGACTCAGGTATCACCTGTTTCCGACCTCACTGATTATTACACCCCTACTACTGCTGCTACGGCTATCTCGGTTAACAATAACCCTACCCCGGATAATAGTTACTTCGTCCAGGCCAATCATCAAGTTGGTACTTACGACAACTACTCGGGGTACTTCAGTAATCAAGGGTTCGGATTAGAACATTTCCAAAACATGGACGAGCAAAACAACAATGATCAGTGGGGCACTGTGGACAGTGGGGACATATCGGACAATTTGTGGAATGTTGAGGACATGTGGTTCTTACAACAGCAGCTCAGCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

354

Amino Acids

39.88

Weight (kDa)

5.94

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	42 - 89	3.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	45 - 103	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	95 - 138	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	100 - 141	8.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	214
Acc36I	ACCTGC	2 cut(s)	126, 206
AccB7I	CCANNNNNTGG	1 cut(s)	946
AccII	CGCG	1 cut(s)	527
AciI	CCGC	8 cut(s)	190, 250, 268, 522, 525, 527, 555, 731
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	892
AfaI	GTAC	4 cut(s)	709, 727, 883, 905
AfiI	CCNNNNNNNGG	2 cut(s)	841, 946
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	3 cut(s)	302, 469, 601
AjnI	CCWGG	2 cut(s)	373, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AloI	GAACNNNNNNTCC	2 cut(s)	1016, 1048
AluBI	AGCT	6 cut(s)	98, 155, 240, 310, 584, 1048
AluI	AGCT	6 cut(s)	98, 155, 240, 310, 584, 1048
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	898
AoxI	GGCC	5 cut(s)	128, 187, 528, 732, 864
ApeKI	GCWGC	6 cut(s)	27, 210, 240, 575, 806, 1045
ApoI	RAATTY	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	115, 128, 411
AsuC2I	CCSGG	2 cut(s)	713, 842
AsuHPI	GGTGA	3 cut(s)	584, 650, 756
AvaI	CYCGRG	1 cut(s)	898
AvaII	GGWCC	2 cut(s)	115, 411
BaeGI	GKGCMC	1 cut(s)	980
BaeI	ACNNNNGTAYC	4 cut(s)	744, 777, 895, 928
BbsI	GAAGAC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	6 cut(s)	14, 197, 227, 562, 793, 1057
BccI	CCATC	4 cut(s)	46, 106, 342, 669
BceAI	ACGGC	3 cut(s)	196, 744, 828
BciT130I	CCWGG	2 cut(s)	375, 863
BclI	TGATCA	2 cut(s)	85, 967
BcnI	CCSGG	2 cut(s)	713, 842
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	152, 498, 723
BfmI	CTRYAG	1 cut(s)	241
BfuAI	ACCTGC	2 cut(s)	126, 206
BglI	GCCNNNNNGGC	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	1049
Bme1390I	CCNGG	4 cut(s)	375, 713, 842, 863
Bme18I	GGWCC	2 cut(s)	115, 411
BmeT110I	CYCGRG	1 cut(s)	898
BmgT120I	GGNCC	3 cut(s)	115, 128, 411
BmiI	GGNNCC	2 cut(s)	19, 413
BmrFI	CCNGG	4 cut(s)	375, 713, 842, 863
BmsI	GCATC	1 cut(s)	483
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	1049
BpuMI	CCSGG	2 cut(s)	713, 842
BsaJI	CCNNGG	5 cut(s)	131, 178, 525, 711, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	841, 946
Bse1I	ACTGG	2 cut(s)	79, 235
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	375, 863
BseDI	CCNNGG	5 cut(s)	131, 178, 525, 711, 840
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	841, 946
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	90, 770
BseNI	ACTGG	2 cut(s)	79, 235
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	6 cut(s)	14, 197, 227, 562, 793, 1057
BseYI	CCCAGC	2 cut(s)	336, 580
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	5 cut(s)	130, 189, 530, 734, 866
BsiHKCI	CYCGRG	1 cut(s)	898
BsiSI	CCGG	2 cut(s)	713, 842
BslFI	GGGAC	2 cut(s)	766, 1007
BslI	CCNNNNNNNGG	2 cut(s)	841, 946
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	766, 1007
BsnI	GGCC	5 cut(s)	130, 189, 530, 734, 866
BsoBI	CYCGRG	1 cut(s)	898
Bsp1286I	GDGCHC	1 cut(s)	980
Bsp143I	GATC	3 cut(s)	85, 103, 967
Bsp1720I	GCTNAGC	1 cut(s)	1049
BspACI	CCGC	8 cut(s)	190, 250, 268, 522, 525, 527, 555, 731
BspANI	GGCC	5 cut(s)	130, 189, 530, 734, 866
BspCNI	CTCAG	3 cut(s)	91, 769, 1062
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	3 cut(s)	82, 88, 159
BspLI	GGNNCC	2 cut(s)	19, 413
BspMAI	CTGCAG	1 cut(s)	245
BspMI	ACCTGC	2 cut(s)	126, 206
BspPI	GGATC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	79, 235
BssECI	CCNNGG	5 cut(s)	131, 178, 525, 711, 840
BssMI	GATC	3 cut(s)	85, 103, 967
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	375, 863
Bst4CI	ACNGT	4 cut(s)	139, 707, 982, 989
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	208, 461
BstDEI	CTNAG	3 cut(s)	99, 756, 1049
BstDSI	CCRYGG	2 cut(s)	178, 525
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	88, 106, 970
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	85, 103, 967
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 127, 189, 212, 527, 548, 581, 812
BstNI	CCWGG	2 cut(s)	375, 863
BstNSI	RCATGY	2 cut(s)	431, 1030
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	373, 711, 840, 861
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	6 cut(s)	14, 197, 227, 562, 793, 1057
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	5 cut(s)	130, 189, 530, 734, 866
BtgI	CCRYGG	2 cut(s)	178, 525
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	5 cut(s)	537, 780, 977, 978, 994
BveI	ACCTGC	2 cut(s)	126, 206
Cac8I	GCNNGC	2 cut(s)	208, 461
CaiI	CAGNNNCTG	1 cut(s)	27
CciI	TCATGA	3 cut(s)	82, 88, 159
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	115, 128, 411
Cfr42I	CCGCGG	1 cut(s)	528
Csp6I	GTAC	4 cut(s)	708, 726, 882, 904
CviAII	CATG	8 cut(s)	7, 83, 89, 160, 428, 478, 946, 1027
CviQI	GTAC	4 cut(s)	708, 726, 882, 904
DdeI	CTNAG	3 cut(s)	99, 756, 1049
DpnI	GATC	3 cut(s)	87, 105, 969
DpnII	GATC	3 cut(s)	85, 103, 967
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	115, 411
Eco57I	CTGAAG	1 cut(s)	892
Eco88I	CYCGRG	1 cut(s)	898
EcoO109I	RGGNCCY	2 cut(s)	128, 411
EcoRI	GAATTC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	373, 861
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	8 cut(s)	10, 86, 92, 163, 431, 481, 949, 1030
FaiI	YATR	9 cut(s)	8, 84, 90, 161, 429, 479, 947, 998, 1028
FalI	AAGNNNNNCTT	4 cut(s)	115, 147, 294, 326
FaqI	GGGAC	2 cut(s)	766, 1007
FatI	CATG	8 cut(s)	6, 82, 88, 159, 427, 477, 945, 1026
FbaI	TGATCA	2 cut(s)	85, 967
FokI	GGATG	1 cut(s)	505
FspBI	CTAG	3 cut(s)	152, 498, 723
FspI	TGCGCA	1 cut(s)	214
GlaI	GCGC	1 cut(s)	214
GsaI	CCCAGC	2 cut(s)	340, 584
HaeIII	GGCC	5 cut(s)	130, 189, 530, 734, 866
HapII	CCGG	2 cut(s)	713, 842
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	8 cut(s)	10, 86, 92, 163, 431, 481, 949, 1030
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	2 cut(s)	454, 826
HindII	GTYRAC	2 cut(s)	454, 826
HinfI	GANTC	4 cut(s)	316, 513, 743, 754
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	2 cut(s)	713, 842
HphI	GGTGA	3 cut(s)	584, 650, 756
Hpy166II	GTNNAC	3 cut(s)	454, 826, 985
Hpy188I	TCNGA	6 cut(s)	108, 222, 742, 775, 926, 1003
Hpy188III	TCNNGA	6 cut(s)	83, 89, 160, 299, 320, 490
Hpy8I	GTNNAC	3 cut(s)	454, 826, 985
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	179, 372
HpyCH4III	ACNGT	4 cut(s)	139, 707, 982, 989
HpyCH4V	TGCA	3 cut(s)	30, 243, 362
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 127, 189, 212, 527, 548, 581, 812
HpyF3I	CTNAG	3 cut(s)	99, 756, 1049
Hsp92II	CATG	8 cut(s)	10, 86, 92, 163, 431, 481, 949, 1030
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	85, 967
KspAI	GTTAAC	1 cut(s)	826
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	85, 103, 967
Lsp1109I	GCAGC	6 cut(s)	14, 197, 227, 562, 793, 1057
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	3 cut(s)	152, 498, 723
MaeIII	GTNAC	6 cut(s)	42, 287, 341, 656, 701, 851
MalI	GATC	3 cut(s)	87, 105, 969
MboI	GATC	3 cut(s)	85, 103, 967
MboII	GAAGA	3 cut(s)	135, 158, 314
MhlI	GDGCHC	1 cut(s)	980
MluCI	AATT	5 cut(s)	163, 357, 562, 718, 1006
MlyI	GAGTC	2 cut(s)	737, 748
MmeI	TCCRAC	1 cut(s)	798
MseI	TTAA	2 cut(s)	612, 825
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	192, 527
MspI	CCGG	2 cut(s)	713, 842
MspR9I	CCNGG	4 cut(s)	375, 713, 842, 863
MvaI	CCWGG	2 cut(s)	375, 863
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	8 cut(s)	33, 127, 189, 212, 527, 548, 581, 812
NciI	CCSGG	2 cut(s)	713, 842
NdeII	GATC	3 cut(s)	85, 103, 967
NlaIII	CATG	8 cut(s)	10, 86, 92, 163, 431, 481, 949, 1030
NlaIV	GGNNCC	2 cut(s)	19, 413
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	42, 656
NsbI	TGCGCA	1 cut(s)	214
NspI	RCATGY	2 cut(s)	431, 1030
PagI	TCATGA	3 cut(s)	82, 88, 159
PciI	ACATGT	1 cut(s)	1026
PfeI	GAWTC	2 cut(s)	316, 513
PflMI	CCANNNNNTGG	1 cut(s)	946
PleI	GAGTC	2 cut(s)	737, 748
PpsI	GAGTC	2 cut(s)	737, 748
PpuMI	RGGWCCY	1 cut(s)	411
PscI	ACATGT	1 cut(s)	1026
PshAI	GACNNNNGTC	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	373, 861
PspFI	CCCAGC	2 cut(s)	336, 580
PspGI	CCWGG	2 cut(s)	373, 861
PspN4I	GGNNCC	2 cut(s)	19, 413
PspPI	GGNCC	3 cut(s)	115, 128, 411
PspPPI	RGGWCCY	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	27
RsaI	GTAC	4 cut(s)	709, 727, 883, 905
RsaNI	GTAC	4 cut(s)	708, 726, 882, 904
RseI	CAYNNNNRTG	1 cut(s)	87
SacII	CCGCGG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	612, 825
Sau3AI	GATC	3 cut(s)	85, 103, 967
Sau96I	GGNCC	3 cut(s)	115, 128, 411
SchI	GAGTC	2 cut(s)	737, 748
ScrFI	CCNGG	4 cut(s)	375, 713, 842, 863
SduI	GDGCHC	1 cut(s)	980
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	241
Sfr303I	CCGCGG	1 cut(s)	528
SgrBI	CCGCGG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	115, 411
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	163, 357, 562, 718, 1006
SsiI	CCGC	8 cut(s)	190, 250, 268, 522, 525, 527, 555, 731
SspMI	CTAG	3 cut(s)	152, 498, 723
StyD4I	CCNGG	4 cut(s)	373, 711, 840, 861
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	4 cut(s)	139, 707, 982, 989
TaqI	TCGA	2 cut(s)	353, 507
TasI	AATT	5 cut(s)	163, 357, 562, 718, 1006
TauI	GCSGC	5 cut(s)	192, 524, 527, 530, 734
TfiI	GAWTC	2 cut(s)	316, 513
Tru1I	TTAA	2 cut(s)	612, 825
Tru9I	TTAA	2 cut(s)	612, 825
TscAI	CASTG	5 cut(s)	544, 787, 977, 985, 994
TseFI	GTSAC	2 cut(s)	42, 656
TseI	GCWGC	6 cut(s)	27, 210, 240, 575, 806, 1045
Tsp45I	GTSAC	2 cut(s)	42, 656
TspDTI	ATGAA	4 cut(s)	84, 176, 317, 666
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	5 cut(s)	544, 787, 977, 985, 994
Van91I	CCANNNNNTGG	1 cut(s)	946
VpaK11BI	GGWCC	2 cut(s)	115, 411
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	2 cut(s)	431, 1030
XspI	CTAG	3 cut(s)	152, 498, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.