Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Reverse (-)

48872053 .. 48872646

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCGCTACCTCTGGATGCCGAGATTGGTCGAAAGAATTCAAGCCGCCGCGTCGGCCGCCACCGCCCCCACCGGAGCCTCTTCTTCTATCACAGCCGCCGCGGTCAATACTTATCATTTCAACAATAACAATAACAGCTTCCAAGCCCCCGCGGGAGCAGGACACGTCGCTTTACAACAGGCAACGCTCATTGGCAATAACAATGACTTGGCCGGAAGTTACACCACTCCGGAAAACTCCAGCACTGCGGCGTCATCGGACTCGTTTGGGACTCAGGTCTCGCCGGTGTCGGAGCTAACCGACTATTACAGTAATATGTCGGTTAACAATAATAAACCTAGTAGTCAGGCTCTGGATTACTTCCAAGCCACCAATCCTCATCACCAAGTCGGTTATCATGATTCCATGACTAGTCCATCTGGTTACTCATTCAATCAAGGAGGACTAAACAGCCATAGCTTTCAAGCTGCTTCGGCGCCGGAGCAAAACAACAACGGCCAGTGGAGCTTGGACGGTGGGGACTTTTCGGACAATCTGTGGAACGTTGAGGAATCCGACATGTGGTTCTTACAGCAGCAACTCGGCAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

197

Amino Acids

21.15

Weight (kDa)

4.51

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	3 cut(s)	50, 101, 152
AccIII	TCCGGA	1 cut(s)	229
AclI	AACGTT	1 cut(s)	543
AcoI	YGGCCR	3 cut(s)	54, 210, 496
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	251, 476
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	2 cut(s)	163, 558
AgsI	TTSAA	4 cut(s)	41, 121, 433, 464
AhlI	ACTAGT	1 cut(s)	410
AjiI	CACGTC	1 cut(s)	166
AluBI	AGCT	5 cut(s)	138, 295, 459, 467, 507
AluI	AGCT	5 cut(s)	138, 295, 459, 467, 507
Alw26I	GTCTC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	3 cut(s)	54, 210, 496
ApeKI	GCWGC	2 cut(s)	467, 574
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	6, 478
AsuHPI	GGTGA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	454, 586
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	2 cut(s)	339, 411
BfoI	RGCGCY	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	8 cut(s)	45, 48, 57, 96, 99, 249, 468, 575
BlsI	GCNGC	8 cut(s)	46, 49, 58, 97, 100, 250, 469, 576
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	76, 477
BmsI	GCATC	1 cut(s)	6
BoxI	GACNNNNGTC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	223
BsaHI	GRCGYC	2 cut(s)	251, 476
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	99, 150
BsaWI	WCCGGW	2 cut(s)	71, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	99, 150
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	499
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	454, 586
Bsh1236I	CGCG	3 cut(s)	50, 101, 152
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	56, 212, 498
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	72, 213, 230, 284, 479
BslFI	GGGAC	2 cut(s)	283, 533
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	283, 533
BsnI	GGCC	3 cut(s)	56, 212, 498
Bso31I	GGTCTC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	229
BspANI	GGCC	3 cut(s)	56, 212, 498
BspCNI	CTCAG	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	3 cut(s)	50, 101, 152
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	76, 477
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	99, 150
BssNI	GRCGYC	2 cut(s)	251, 476
Bst4CI	ACNGT	2 cut(s)	311, 515
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	2 cut(s)	251, 476
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	2 cut(s)	99, 150
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	3 cut(s)	50, 101, 152
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	6, 478
BstMAI	GTCTC	1 cut(s)	283
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 56, 62, 473, 504
BstNSI	RCATGY	1 cut(s)	562
BstPAI	GACNNNNGTC	1 cut(s)	275
BstUI	CGCG	3 cut(s)	50, 101, 152
BstV1I	GCAGC	2 cut(s)	454, 586
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	56, 212, 498
BtgI	CCRYGG	2 cut(s)	99, 150
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 506
CaiI	CAGNNNCTG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	2 cut(s)	6, 478
Cfr10I	RCCGGY	1 cut(s)	283
Cfr42I	CCGCGG	2 cut(s)	102, 153
CseI	GACGC	2 cut(s)	39, 240
CviAII	CATG	3 cut(s)	398, 406, 559
DdeI	CTNAG	1 cut(s)	273
DinI	GGCGCC	1 cut(s)	477
EaeI	YGGCCR	3 cut(s)	54, 210, 496
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
FaeI	CATG	3 cut(s)	401, 409, 562
FaiI	YATR	5 cut(s)	317, 399, 407, 456, 560
FaqI	GGGAC	2 cut(s)	283, 533
FatI	CATG	3 cut(s)	397, 405, 558
FauI	CCCGC	2 cut(s)	145, 157
Fnu4HI	GCNGC	8 cut(s)	45, 48, 57, 96, 99, 249, 468, 575
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	8 cut(s)	45, 48, 57, 96, 99, 249, 468, 575
FspBI	CTAG	2 cut(s)	339, 411
GlaI	GCGC	2 cut(s)	5, 477
GluI	GCNGC	8 cut(s)	45, 48, 57, 96, 99, 249, 468, 575
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	56, 212, 498
HapII	CCGG	5 cut(s)	72, 213, 230, 284, 479
HgaI	GACGC	2 cut(s)	39, 240
HhaI	GCGC	2 cut(s)	6, 478
Hin1I	GRCGYC	2 cut(s)	251, 476
Hin1II	CATG	3 cut(s)	401, 409, 562
Hin6I	GCGC	2 cut(s)	4, 476
HinP1I	GCGC	2 cut(s)	4, 476
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	260, 271, 401, 551
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	5 cut(s)	72, 213, 230, 284, 479
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	259, 292, 529, 556
Hpy188III	TCNNGA	4 cut(s)	13, 230, 353, 398
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	55, 170
HpyCH4III	ACNGT	2 cut(s)	311, 515
HpyCH4IV	ACGT	2 cut(s)	165, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 56, 62, 473, 504
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	165, 543
Hsp92I	GRCGYC	2 cut(s)	251, 476
Hsp92II	CATG	3 cut(s)	401, 409, 562
HspAI	GCGC	2 cut(s)	4, 476
KasI	GGCGCC	1 cut(s)	475
Kpn2I	TCCGGA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	325
KspI	CCGCGG	2 cut(s)	102, 153
LmnI	GCTCC	5 cut(s)	74, 155, 292, 481, 504
Lsp1109I	GCAGC	2 cut(s)	454, 586
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	339, 411
MaeII	ACGT	2 cut(s)	165, 543
MaeIII	GTNAC	2 cut(s)	218, 422
MboII	GAAGA	2 cut(s)	72, 75
MluCI	AATT	1 cut(s)	36
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	254, 265
MmeI	TCCRAC	2 cut(s)	270, 579
MnlI	CCTC	5 cut(s)	20, 88, 387, 434, 541
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	101, 152
MspI	CCGG	5 cut(s)	72, 213, 230, 284, 479
MvnI	CGCG	3 cut(s)	50, 101, 152
MwoI	GCNNNNNNNGC	5 cut(s)	53, 56, 62, 473, 504
NarI	GGCGCC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	401, 409, 562
NlaIV	GGNNCC	2 cut(s)	76, 477
NmeAIII	GCCGAG	2 cut(s)	45, 561
NspI	RCATGY	1 cut(s)	562
PagI	TCATGA	1 cut(s)	397
PciI	ACATGT	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	401, 551
PkrI	GCNGC	8 cut(s)	46, 49, 58, 97, 100, 250, 469, 576
PleI	GAGTC	2 cut(s)	254, 265
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	2 cut(s)	254, 265
PscI	ACATGT	1 cut(s)	558
PshAI	GACNNNNGTC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	76, 477
PstNI	CAGNNNCTG	1 cut(s)	352
SacII	CCGCGG	2 cut(s)	102, 153
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	8 cut(s)	45, 48, 57, 96, 99, 249, 468, 575
SchI	GAGTC	2 cut(s)	254, 265
SfaNI	GCATC	1 cut(s)	6
SfoI	GGCGCC	1 cut(s)	477
Sfr303I	CCGCGG	2 cut(s)	102, 153
SgrAI	CRCCGGYG	1 cut(s)	283
SgrBI	CCGCGG	2 cut(s)	102, 153
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	1 cut(s)	36
SspDI	GGCGCC	1 cut(s)	475
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	2 cut(s)	339, 411
TaaI	ACNGT	2 cut(s)	311, 515
TaiI	ACGT	2 cut(s)	168, 546
TaqI	TCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	36
TauI	GCSGC	6 cut(s)	47, 50, 59, 98, 101, 251
TfiI	GAWTC	2 cut(s)	401, 551
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	250, 506
TseI	GCWGC	2 cut(s)	467, 574
TspRI	CASTG	2 cut(s)	250, 506
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	339, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.