Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Forward (+)

2003393 .. 2006727

Gene Structure 3335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGATGAAAAAGGAAGAAGCTTGAAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAAGATTTTAAGCTCATGAATTACATTGCTACTAATGGAGAAGGTCGCTGGAACTCTCTTTCTCGTTGCGCCGGCCTCCAACGCACCGGTAAAAGCTGTAGACTAAGGTGGTTAAACTATCTCCGCCCTGACGTCCGCCGTGGAAACATTACACTTGAAGAACAACTCTTGATCCTCGAACTTCATTCCCGTTGGGGAAATAGATGGTCAAAAATCGCACAATATTTACCGGGAAGAACGGACAACGAGATCAAGAACTACTGGAGGACGCGGGTGCAAAAGCATGCGAAACAGTTGAAATGTGATGTGAATAGCCAACAATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGACTAGTCGAGAGGATTCAGTCAGCCTCGGCCTCATCCGCAGCAGCAGCCACCACCACAACCACCACCACCACAGGATCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAATTACGACTACAACAACAACAACATGGGACAACAGTTTGGTGTAATGAGCAACAATGATTATATCACGCCTGAAAATTCCAGCGTGGCAGTGTCTCCGGCGTCAGACTTAACGGAGTACTACAGCGCTCCAAACCCTAACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCAGATCAGAATTTAGTGAGTTCACAATTATTACCGGATAATTATTTCGACTATAGTGGATTATTAGACGAAGATCTAACGGCTATGCAAGAGCAGAGTAACCTCAGCTGGTTTGAAAACATTAATGGTGCTGCTTCTTCTTCAGACAGTTTATGGAACATTGGAGAAACTGATGAAGAATTCTGGTTCTTACAGCAGCAACAACAGTTCAACAATAATGGTAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

37.02

Weight (kDa)

4.93

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 68	6.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 81	2.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 117	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 120	1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	352
AciI	CCGC	4 cut(s)	205, 217, 352, 474
AclWI	GGATC	2 cut(s)	247, 520
AcsI	RAATTY	3 cut(s)	637, 751, 920
AcuI	CTGAAG	2 cut(s)	99, 867
AcyI	GRCGYC	2 cut(s)	213, 662
AfaI	GTAC	2 cut(s)	422, 680
AfeI	AGCGCT	1 cut(s)	688
AfiI	CCNNNNNNNGG	1 cut(s)	703
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	6 cut(s)	25, 239, 379, 406, 857, 952
AhlI	ACTAGT	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	525
AluBI	AGCT	5 cut(s)	21, 94, 177, 849, 966
AluI	AGCT	5 cut(s)	21, 94, 177, 849, 966
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	247, 520
Aor51HI	AGCGCT	1 cut(s)	688
AoxI	GGCC	2 cut(s)	154, 465
ApeKI	GCWGC	5 cut(s)	476, 479, 482, 872, 937
ApoI	RAATTY	3 cut(s)	637, 751, 920
AseI	ATTAAT	1 cut(s)	864
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	152, 689
AspS9I	GGNCC	2 cut(s)	52, 65
AsuC2I	CCSGG	2 cut(s)	312, 704
AvaII	GGWCC	2 cut(s)	52, 65
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	5 cut(s)	488, 491, 494, 859, 949
BccI	CCATC	2 cut(s)	43, 279
BceAI	ACGGC	2 cut(s)	204, 837
BcnI	CCSGG	2 cut(s)	312, 704
BcoDI	GTCTC	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	3 cut(s)	178, 682, 793
BfoI	RGCGCY	1 cut(s)	690
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	5 cut(s)	477, 480, 483, 873, 938
BlsI	GCNGC	5 cut(s)	478, 481, 484, 874, 939
BmcAI	AGTACT	2 cut(s)	422, 680
Bme1390I	CCNGG	2 cut(s)	312, 704
Bme18I	GGWCC	2 cut(s)	52, 65
BmgBI	CACGTC	1 cut(s)	525
BmgT120I	GGNCC	2 cut(s)	52, 65
BmrFI	CCNGG	2 cut(s)	312, 704
BmsI	GCATC	2 cut(s)	420, 543
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	845
BpuMI	CCSGG	2 cut(s)	312, 704
BsaHI	GRCGYC	2 cut(s)	213, 662
BsaJI	CCNNGG	3 cut(s)	68, 220, 462
BsaWI	WCCGGW	2 cut(s)	167, 775
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	3 cut(s)	152, 167, 518
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	68, 220, 462
BseGI	GGATG	3 cut(s)	10, 435, 470
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	859
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	5 cut(s)	488, 491, 494, 859, 949
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	156, 467
BshTI	ACCGGT	1 cut(s)	167
BsiSI	CCGG	7 cut(s)	153, 168, 311, 519, 659, 704, 776
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	156, 467
Bsp143I	GATC	5 cut(s)	252, 330, 512, 745, 814
BspACI	CCGC	4 cut(s)	205, 217, 352, 474
BspANI	GGCC	2 cut(s)	156, 467
BspCNI	CTCAG	1 cut(s)	858
BspFNI	CGCG	1 cut(s)	352
BspHI	TCATGA	2 cut(s)	96, 558
BspPI	GGATC	2 cut(s)	247, 520
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	3 cut(s)	152, 167, 518
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	3 cut(s)	152, 167, 518
BssECI	CCNNGG	3 cut(s)	68, 220, 462
BssMI	GATC	5 cut(s)	252, 330, 512, 745, 814
BssNI	GRCGYC	2 cut(s)	213, 662
Bst4CI	ACNGT	4 cut(s)	375, 597, 890, 948
BstACI	GRCGYC	2 cut(s)	213, 662
BstC8I	GCNNGC	3 cut(s)	154, 366, 520
BstDEI	CTNAG	2 cut(s)	185, 845
BstDSI	CCRYGG	2 cut(s)	68, 220
BstF5I	GGATG	3 cut(s)	10, 435, 470
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	152, 689
BstKTI	GATC	5 cut(s)	255, 333, 515, 748, 817
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	5 cut(s)	252, 330, 512, 745, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 473, 482
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	310, 702
BstSFI	CTRYAG	3 cut(s)	178, 682, 793
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	5 cut(s)	488, 491, 494, 859, 949
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	156, 467
BtgI	CCRYGG	2 cut(s)	68, 220
BtrI	CACGTC	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	10, 435, 470
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	3 cut(s)	154, 366, 520
CciI	TCATGA	2 cut(s)	96, 558
CfoI	GCGC	2 cut(s)	152, 689
Cfr10I	RCCGGY	3 cut(s)	152, 167, 518
Cfr13I	GGNCC	2 cut(s)	52, 65
CseI	GACGC	2 cut(s)	358, 651
Csp6I	GTAC	2 cut(s)	421, 679
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	5 cut(s)	37, 97, 365, 559, 586
CviQI	GTAC	2 cut(s)	421, 679
DdeI	CTNAG	2 cut(s)	185, 845
DpnI	GATC	5 cut(s)	254, 332, 514, 747, 816
DpnII	GATC	5 cut(s)	252, 330, 512, 745, 814
EciI	GGCGGA	2 cut(s)	194, 206
Eco47I	GGWCC	2 cut(s)	52, 65
Eco47III	AGCGCT	1 cut(s)	688
Eco57I	CTGAAG	2 cut(s)	99, 867
EcoRI	GAATTC	1 cut(s)	920
FaeI	CATG	5 cut(s)	40, 100, 368, 562, 589
FaiI	YATR	9 cut(s)	38, 98, 366, 560, 587, 624, 795, 827, 895
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	5 cut(s)	36, 96, 364, 558, 585
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	477, 480, 483, 873, 938
FokI	GGATG	3 cut(s)	17, 442, 457
Fsp4HI	GCNGC	5 cut(s)	477, 480, 483, 873, 938
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	151, 688
GluI	GCNGC	5 cut(s)	477, 480, 483, 873, 938
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	156, 467
HapII	CCGG	7 cut(s)	153, 168, 311, 519, 659, 704, 776
HgaI	GACGC	2 cut(s)	358, 651
HhaI	GCGC	2 cut(s)	152, 689
Hin1I	GRCGYC	2 cut(s)	213, 662
Hin1II	CATG	5 cut(s)	40, 100, 368, 562, 589
Hin6I	GCGC	2 cut(s)	150, 687
HinP1I	GCGC	2 cut(s)	150, 687
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	7 cut(s)	153, 168, 311, 519, 659, 704, 776
Hpy166II	GTNNAC	3 cut(s)	72, 182, 764
Hpy188I	TCNGA	4 cut(s)	667, 750, 886, 971
Hpy188III	TCNNGA	6 cut(s)	97, 250, 334, 445, 559, 743
Hpy8I	GTNNAC	3 cut(s)	72, 182, 764
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	4 cut(s)	375, 597, 890, 948
HpyCH4IV	ACGT	2 cut(s)	213, 524
HpyCH4V	TGCA	3 cut(s)	358, 534, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 473, 482
HpyF3I	CTNAG	2 cut(s)	185, 845
HpySE526I	ACGT	2 cut(s)	213, 524
Hsp92I	GRCGYC	2 cut(s)	213, 662
Hsp92II	CATG	5 cut(s)	40, 100, 368, 562, 589
HspAI	GCGC	2 cut(s)	150, 687
KroI	GCCGGC	2 cut(s)	152, 518
KroNI	GCCGGC	2 cut(s)	154, 520
Kzo9I	GATC	5 cut(s)	252, 330, 512, 745, 814
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	5 cut(s)	488, 491, 494, 859, 949
LweI	GCATC	2 cut(s)	420, 543
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	213, 524
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	5 cut(s)	254, 332, 514, 747, 816
MboI	GATC	5 cut(s)	252, 330, 512, 745, 814
MflI	RGATCY	1 cut(s)	814
MluCI	AATT	9 cut(s)	100, 401, 554, 562, 637, 751, 767, 781, 920
MmeI	TCCRAC	1 cut(s)	184
MroNI	GCCGGC	2 cut(s)	152, 518
MseI	TTAA	4 cut(s)	90, 194, 671, 864
MspA1I	CMGCKG	1 cut(s)	849
MspI	CCGG	7 cut(s)	153, 168, 311, 519, 659, 704, 776
MspR9I	CCNGG	2 cut(s)	312, 704
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	162, 473, 482
NaeI	GCCGGC	2 cut(s)	154, 520
NciI	CCSGG	2 cut(s)	312, 704
NdeII	GATC	5 cut(s)	252, 330, 512, 745, 814
NgoMIV	GCCGGC	2 cut(s)	152, 518
NlaIII	CATG	5 cut(s)	40, 100, 368, 562, 589
NmeAIII	GCCGAG	1 cut(s)	443
NspI	RCATGY	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	368
PagI	TCATGA	2 cut(s)	96, 558
PdiI	GCCGGC	2 cut(s)	154, 520
PfeI	GAWTC	1 cut(s)	451
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	478, 481, 484, 874, 939
PshBI	ATTAAT	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	52, 65
PsuI	RGATCY	1 cut(s)	814
PvuII	CAGCTG	1 cut(s)	849
RsaI	GTAC	2 cut(s)	422, 680
RsaNI	GTAC	2 cut(s)	421, 679
SaqAI	TTAA	4 cut(s)	90, 194, 671, 864
SatI	GCNGC	5 cut(s)	477, 480, 483, 873, 938
Sau3AI	GATC	5 cut(s)	252, 330, 512, 745, 814
Sau96I	GGNCC	2 cut(s)	52, 65
ScaI	AGTACT	2 cut(s)	422, 680
ScrFI	CCNGG	2 cut(s)	312, 704
SfaNI	GCATC	2 cut(s)	420, 543
SfcI	CTRYAG	3 cut(s)	178, 682, 793
SinI	GGWCC	2 cut(s)	52, 65
SpeI	ACTAGT	1 cut(s)	439
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	9 cut(s)	100, 401, 554, 562, 637, 751, 767, 781, 920
SsiI	CCGC	4 cut(s)	205, 217, 352, 474
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	310, 702
TaaI	ACNGT	4 cut(s)	375, 597, 890, 948
TaiI	ACGT	2 cut(s)	216, 527
TaqI	TCGA	4 cut(s)	258, 436, 444, 789
TasI	AATT	9 cut(s)	100, 401, 554, 562, 637, 751, 767, 781, 920
TatI	WGTACW	2 cut(s)	420, 678
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	4 cut(s)	90, 194, 671, 864
Tru9I	TTAA	4 cut(s)	90, 194, 671, 864
TscAI	CASTG	1 cut(s)	657
TseI	GCWGC	5 cut(s)	476, 479, 482, 872, 937
TspDTI	ATGAA	7 cut(s)	21, 113, 254, 431, 547, 575, 930
TspGWI	ACGGA	3 cut(s)	57, 335, 689
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	52, 65
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	3 cut(s)	637, 751, 920
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	2 cut(s)	422, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.