Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000730.1

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Reverse (-)

103568 .. 105327

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000730.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggatgtcaaaccaggaagggtttcggacatcattagaaacagttctgaagaagacgaagatgctatgatgatggacctgagaagagggccatggacggttgaggaagacgttgctctcatgaattacattgctaaccacggcgaaggtcgctggaactcccttgctcgctgtgcaggtttgaaaagaactggaaagagctgcagattaaggtggctcaactatctccgacccgacgttcgacgtggcaacatcactctcgaagaacagcttctcattcttgagcttcattctcgctggggcaaccgatggtccaaaattgcacagcacttgcccggaaggactgacaatgaaatcaaaaactactggaggactcgcgtgcaaaaacacgcaaagcagctcaagtgtgacgtcaacagcaagcagttcaaggacaccatgcgctacctctggatgccgagattggtcgaaagaattcaagccgccgcgtcggccgccaccgcccccaccggagcctcttcttctatcacagccgccgcggtcaatacttatcatttcaacaataacaataacagcttccaagcccccgcgggagcaggacacgtcgctttacaacaggcaacgctcattggcaataacaatgacttggccggaagttacaccactccggaaaactccagcactgcggcgtcatcggactcgtttgggactcaggtctcgccggtgtcggagctaaccgactattacagtaatatgtcggttaacaataataaacctagtagtcaggctctggattacttccaagccaccaatcctcatcaccaagtcggttatcatgattccatgactagtccatctggttactcattcaatcaaggaggactaaacagccatagctttcaagctgcttcggcgccggagcaaaacaacaacggccagtggagcatggacggtggggacttttcggacaatctgtggaacgttgaggaatccgacatgtggttcttacagcagcaactcggcaatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

6.2

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	913
AccII	CGCG	4 cut(s)	378, 488, 539, 590
AccIII	TCCGGA	1 cut(s)	667
AclI	AACGTT	1 cut(s)	981
AcoI	YGGCCR	3 cut(s)	492, 648, 934
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	69
AcyI	GRCGYC	3 cut(s)	411, 689, 914
AfiI	CCNNNNNNNGG	1 cut(s)	999
AflIII	ACRYGT	2 cut(s)	601, 996
AgsI	TTSAA	6 cut(s)	184, 430, 479, 559, 871, 902
AhlI	ACTAGT	1 cut(s)	848
AjiI	CACGTC	2 cut(s)	245, 604
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	8 cut(s)	201, 271, 286, 400, 576, 733, 897, 905
AluI	AGCT	8 cut(s)	201, 271, 286, 400, 576, 733, 897, 905
Alw26I	GTCTC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	790
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	4 cut(s)	89, 492, 648, 934
ApeKI	GCWGC	4 cut(s)	201, 397, 905, 1012
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
Asp700I	GAANNNNTTC	4 cut(s)	22, 43, 270, 474
AspLEI	GCGC	2 cut(s)	444, 916
AspS9I	GGNCC	3 cut(s)	76, 89, 312
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	812
AvaII	GGWCC	2 cut(s)	76, 312
BanI	GGYRCC	1 cut(s)	913
BbsI	GAAGAC	2 cut(s)	60, 114
BbvI	GCAGC	4 cut(s)	188, 409, 892, 1024
BccI	CCATC	3 cut(s)	67, 303, 862
BceAI	ACGGC	2 cut(s)	157, 949
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	721
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	2 cut(s)	777, 849
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	917
BfuAI	ACCTGC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	15, 336
Bme18I	GGWCC	2 cut(s)	76, 312
BmgBI	CACGTC	2 cut(s)	245, 604
BmgT120I	GGNCC	3 cut(s)	76, 89, 312
BmiI	GGNNCC	2 cut(s)	514, 915
BmrFI	CCNGG	2 cut(s)	15, 336
BmsI	GCATC	2 cut(s)	52, 444
BoxI	GACNNNNGTC	1 cut(s)	713
BpiI	GAAGAC	2 cut(s)	60, 114
BpmI	CTGGAG	2 cut(s)	388, 661
BpuEI	CTTGAG	2 cut(s)	302, 386
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	3 cut(s)	411, 689, 914
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	4 cut(s)	92, 139, 537, 588
BsaWI	WCCGGW	2 cut(s)	509, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	999
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	3 cut(s)	196, 371, 937
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	4 cut(s)	92, 139, 537, 588
BseGI	GGATG	2 cut(s)	10, 459
BseLI	CCNNNNNNNGG	1 cut(s)	999
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	71, 725
BseNI	ACTGG	3 cut(s)	196, 371, 937
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	188, 409, 892, 1024
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	4 cut(s)	378, 488, 539, 590
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	4 cut(s)	91, 494, 650, 936
BshNI	GGYRCC	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	6 cut(s)	336, 510, 651, 668, 722, 917
BslFI	GGGAC	2 cut(s)	721, 971
BslI	CCNNNNNNNGG	1 cut(s)	999
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	2 cut(s)	721, 971
BsnI	GGCC	4 cut(s)	91, 494, 650, 936
Bso31I	GGTCTC	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	667
Bsp19I	CCATGG	1 cut(s)	92
BspANI	GGCC	4 cut(s)	91, 494, 650, 936
BspCNI	CTCAG	2 cut(s)	72, 724
BspEI	TCCGGA	1 cut(s)	667
BspFNI	CGCG	4 cut(s)	378, 488, 539, 590
BspHI	TCATGA	2 cut(s)	120, 835
BspLI	GGNNCC	2 cut(s)	514, 915
BspMAI	CTGCAG	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	196, 371, 937
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	92, 139, 537, 588
BssNI	GRCGYC	3 cut(s)	411, 689, 914
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	4 cut(s)	44, 100, 749, 953
Bst6I	CTCTTC	2 cut(s)	79, 523
BstACI	GRCGYC	3 cut(s)	411, 689, 914
BstC8I	GCNNGC	3 cut(s)	169, 380, 422
BstDEI	CTNAG	2 cut(s)	80, 711
BstDSI	CCRYGG	4 cut(s)	92, 139, 537, 588
BstF5I	GGATG	2 cut(s)	10, 459
BstFNI	CGCG	4 cut(s)	378, 488, 539, 590
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	2 cut(s)	444, 916
BstMAI	GTCTC	1 cut(s)	721
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 173, 491, 494, 500, 911, 942
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	1000
BstPAI	GACNNNNGTC	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	13, 334
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	4 cut(s)	378, 488, 539, 590
BstV1I	GCAGC	4 cut(s)	188, 409, 892, 1024
BstV2I	GAAGAC	2 cut(s)	60, 114
BstZI	CGGCCG	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	91, 494, 650, 936
BtgI	CCRYGG	4 cut(s)	92, 139, 537, 588
BtrI	CACGTC	2 cut(s)	245, 604
BtsCI	GGATG	2 cut(s)	10, 459
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	681, 944
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	3 cut(s)	169, 380, 422
CaiI	CAGNNNCTG	1 cut(s)	790
CciI	TCATGA	2 cut(s)	120, 835
CfoI	GCGC	2 cut(s)	444, 916
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	3 cut(s)	76, 89, 312
Cfr42I	CCGCGG	2 cut(s)	540, 591
CseI	GACGC	2 cut(s)	477, 678
CviAII	CATG	7 cut(s)	93, 121, 439, 836, 844, 946, 997
DdeI	CTNAG	2 cut(s)	80, 711
DinI	GGCGCC	1 cut(s)	915
EaeI	YGGCCR	3 cut(s)	492, 648, 934
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	79, 523
EarI	CTCTTC	2 cut(s)	79, 523
EclXI	CGGCCG	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	76, 312
Eco52I	CGGCCG	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	915
EheI	GGCGCC	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	7 cut(s)	96, 124, 442, 839, 847, 949, 1000
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	2 cut(s)	721, 971
FatI	CATG	7 cut(s)	92, 120, 438, 835, 843, 945, 996
FauI	CCCGC	2 cut(s)	583, 595
FokI	GGATG	2 cut(s)	17, 466
FspBI	CTAG	2 cut(s)	777, 849
GlaI	GCGC	2 cut(s)	443, 915
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	388, 661
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	4 cut(s)	91, 494, 650, 936
HapII	CCGG	6 cut(s)	336, 510, 651, 668, 722, 917
HgaI	GACGC	2 cut(s)	477, 678
HhaI	GCGC	2 cut(s)	444, 916
Hin1I	GRCGYC	3 cut(s)	411, 689, 914
Hin1II	CATG	7 cut(s)	96, 124, 442, 839, 847, 949, 1000
Hin6I	GCGC	2 cut(s)	442, 914
HinP1I	GCGC	2 cut(s)	442, 914
HincII	GTYRAC	2 cut(s)	415, 763
HindII	GTYRAC	2 cut(s)	415, 763
HinfI	GANTC	5 cut(s)	373, 698, 709, 839, 989
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	6 cut(s)	336, 510, 651, 668, 722, 917
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	2 cut(s)	415, 763
Hpy188I	TCNGA	7 cut(s)	28, 49, 230, 697, 730, 967, 994
Hpy188III	TCNNGA	7 cut(s)	121, 260, 281, 451, 668, 791, 836
Hpy8I	GTNNAC	2 cut(s)	415, 763
Hpy99I	CGWCG	4 cut(s)	239, 246, 493, 608
HpyAV	CCTTC	3 cut(s)	12, 140, 333
HpyCH4III	ACNGT	4 cut(s)	44, 100, 749, 953
HpyCH4IV	ACGT	6 cut(s)	111, 237, 244, 411, 603, 981
HpyCH4V	TGCA	4 cut(s)	176, 204, 323, 382
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 173, 491, 494, 500, 911, 942
HpyF3I	CTNAG	2 cut(s)	80, 711
HpySE526I	ACGT	6 cut(s)	111, 237, 244, 411, 603, 981
Hsp92I	GRCGYC	3 cut(s)	411, 689, 914
Hsp92II	CATG	7 cut(s)	96, 124, 442, 839, 847, 949, 1000
HspAI	GCGC	2 cut(s)	442, 914
KasI	GGCGCC	1 cut(s)	913
Kpn2I	TCCGGA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	763
KspI	CCGCGG	2 cut(s)	540, 591
LmnI	GCTCC	5 cut(s)	512, 593, 730, 919, 942
Lsp1109I	GCAGC	4 cut(s)	188, 409, 892, 1024
LweI	GCATC	2 cut(s)	52, 444
MaeI	CTAG	2 cut(s)	777, 849
MaeII	ACGT	6 cut(s)	111, 237, 244, 411, 603, 981
MaeIII	GTNAC	3 cut(s)	407, 656, 860
MboII	GAAGA	8 cut(s)	62, 65, 71, 96, 119, 275, 510, 513
MluCI	AATT	3 cut(s)	124, 318, 474
Mly113I	GGCGCC	1 cut(s)	914
MlyI	GAGTC	3 cut(s)	367, 692, 703
MmeI	TCCRAC	3 cut(s)	253, 708, 1017
MnlI	CCTC	8 cut(s)	80, 97, 363, 458, 526, 825, 872, 979
MroI	TCCGGA	1 cut(s)	667
MroXI	GAANNNNTTC	4 cut(s)	22, 43, 270, 474
MseI	TTAA	2 cut(s)	209, 762
MspA1I	CMGCKG	2 cut(s)	539, 590
MspI	CCGG	6 cut(s)	336, 510, 651, 668, 722, 917
MspR9I	CCNGG	2 cut(s)	15, 336
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	4 cut(s)	378, 488, 539, 590
MwoI	GCNNNNNNNGC	7 cut(s)	150, 173, 491, 494, 500, 911, 942
NarI	GGCGCC	1 cut(s)	914
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	92
NlaIII	CATG	7 cut(s)	96, 124, 442, 839, 847, 949, 1000
NlaIV	GGNNCC	2 cut(s)	514, 915
NmeAIII	GCCGAG	2 cut(s)	483, 999
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	1000
PagI	TCATGA	2 cut(s)	120, 835
PciI	ACATGT	1 cut(s)	996
PdmI	GAANNNNTTC	4 cut(s)	22, 43, 270, 474
PfeI	GAWTC	2 cut(s)	839, 989
PleI	GAGTC	3 cut(s)	367, 692, 703
PluTI	GGCGCC	1 cut(s)	917
PpsI	GAGTC	3 cut(s)	367, 692, 703
PscI	ACATGT	1 cut(s)	996
PshAI	GACNNNNGTC	1 cut(s)	713
Psp1406I	AACGTT	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	514, 915
PspPI	GGNCC	3 cut(s)	76, 89, 312
PstI	CTGCAG	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	790
SacII	CCGCGG	2 cut(s)	540, 591
SaqAI	TTAA	2 cut(s)	209, 762
Sau96I	GGNCC	3 cut(s)	76, 89, 312
SchI	GAGTC	3 cut(s)	367, 692, 703
ScrFI	CCNGG	2 cut(s)	15, 336
SfaNI	GCATC	2 cut(s)	52, 444
SfcI	CTRYAG	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	915
Sfr303I	CCGCGG	2 cut(s)	540, 591
SgrAI	CRCCGGYG	1 cut(s)	721
SgrBI	CCGCGG	2 cut(s)	540, 591
SinI	GGWCC	2 cut(s)	76, 312
SmlI	CTYRAG	2 cut(s)	281, 401
SmoI	CTYRAG	2 cut(s)	281, 401
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	3 cut(s)	124, 318, 474
SspDI	GGCGCC	1 cut(s)	913
SspI	AATATT	1 cut(s)	1027
SspMI	CTAG	2 cut(s)	777, 849
StyD4I	CCNGG	2 cut(s)	13, 334
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	44, 100, 749, 953
TaiI	ACGT	6 cut(s)	114, 240, 247, 414, 606, 984
TaqI	TCGA	3 cut(s)	241, 261, 468
TasI	AATT	3 cut(s)	124, 318, 474
TauI	GCSGC	6 cut(s)	485, 488, 497, 536, 539, 689
TfiI	GAWTC	2 cut(s)	839, 989
Tru1I	TTAA	2 cut(s)	209, 762
Tru9I	TTAA	2 cut(s)	209, 762
TscAI	CASTG	2 cut(s)	688, 944
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	201, 397, 905, 1012
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	137, 278, 366
TspRI	CASTG	2 cut(s)	688, 944
VpaK11BI	GGWCC	2 cut(s)	76, 312
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	1000
XmnI	GAANNNNTTC	4 cut(s)	22, 43, 270, 474
XspI	CTAG	2 cut(s)	777, 849
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.