Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Forward (+)

8920296 .. 8922733

Gene Structure 2438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G111700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACGGTGTTCTAGGAGGAGGAAGAGGCTGCAACAACTCCTCATCAGCCTCGGCCACCATTGAAAATGATATTCATGAGGAAGCTGAGGACCAGATGGACCTGAGAAGAGGGCCTTGGACTGTTGAAGAAGACCTTGCTCTCATGAATTACATTGCTAACCACGGCGAAGGTCGTTGGAACTCCCTCGCTCGCTGTGCAGGTCTGAAAAGAACTGGAAAGAGCTGCAGATTACGGTGGCTCAACTATCTCCGGCCCGACGTCCGACGGGGCAACATCACCCTTGAAGAGCAGCTTCTGATTCTTGAGCTTCATTCTCGCTGGGGTAATAGATGGTCAAAAATTGCACAACACTTGCCAGGAAGGACTGACAATGAGATCAAAAACTATTGGAGGACCCGTGTCCAAAAGCACGCCAAGCAACTCAAATGTGACGTCAACAGCAAGCAGTTCAAGGACACCATGAGGTATCTCTGGATGCCTAGGCTGGTCGAAAGAATTCAAGCCGCGGCAGCCGCCTCCACCGCAGCCACTAATTCCTCCATCACCAGCGCCACCGCCGCAGGGGCCACCTCTCACCACTTCAACAACAACAACAACAACAACAACACCTTCCAATCTTCTTCAGGACAAATGTTGTTACAACCAAGTCACCACTTTGGGGCATCGTCACATTCACATGTCACACCAAGTTACACCCCGGACAACTCTAGTACGGCGGCCTCATCAGACTCTTTCGGGGCTCAGGTGTCCCCGGTTTCCGACCTGACGGATTATTACACTCCTACTACTACTGCTACTACTACTATCTCGGTTAACAATAACCCTACCCCGGATAATTATTTGGTCCAAGCAAATCACCAAGTTGGTTGCTATGACCAGTGTTTCAATCCAGGGTTGGGATCGGAACATTTCCAAGGCATGGAGCAACAAGAGAATTATCAGTGGGGCGTGGACGGTGGGGACATATCGGACAATTTGTGGAATGTTGAAGACATGTGGTTCTTACAAGAGCAGCTCAGCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

344

Amino Acids

38.33

Weight (kDa)

5.89

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	264, 438
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccII	CGCG	1 cut(s)	509
AciI	CCGC	7 cut(s)	507, 509, 516, 525, 558, 561, 719
AclWI	GGATC	1 cut(s)	910
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	2 cut(s)	261, 435
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	5 cut(s)	564, 661, 832, 899, 922
AflIII	ACRYGT	2 cut(s)	679, 996
AgsI	TTSAA	8 cut(s)	65, 128, 287, 454, 503, 586, 889, 992
AjnI	CCWGG	2 cut(s)	358, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	5 cut(s)	86, 225, 295, 310, 1018
AluI	AGCT	5 cut(s)	86, 225, 295, 310, 1018
AlwI	GGATC	1 cut(s)	910
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	5 cut(s)	54, 113, 254, 567, 720
ApeKI	GCWGC	6 cut(s)	30, 225, 292, 512, 527, 1015
ApoI	RAATTY	1 cut(s)	498
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
Asp700I	GAANNNNTTC	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	7 cut(s)	91, 100, 113, 255, 396, 567, 847
AsuC2I	CCSGG	3 cut(s)	701, 755, 833
AsuHPI	GGTGA	5 cut(s)	271, 538, 569, 644, 851
AvaII	GGWCC	4 cut(s)	91, 100, 396, 847
AvrII	CCTAGG	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	745
BbsI	GAAGAC	2 cut(s)	138, 999
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	6 cut(s)	17, 212, 304, 524, 539, 1027
BccI	CCATC	3 cut(s)	91, 327, 551
BceAI	ACGGC	2 cut(s)	181, 732
BciT130I	CCWGG	2 cut(s)	360, 894
BcnI	CCSGG	3 cut(s)	701, 755, 833
BfaI	CTAG	3 cut(s)	14, 483, 711
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	566
BlnI	CCTAGG	1 cut(s)	482
BlpI	GCTNAGC	1 cut(s)	1019
Bme1390I	CCNGG	5 cut(s)	360, 701, 755, 833, 894
Bme18I	GGWCC	4 cut(s)	91, 100, 396, 847
BmgT120I	GGNCC	7 cut(s)	91, 100, 113, 255, 396, 567, 847
BmiI	GGNNCC	2 cut(s)	398, 568
BmrFI	CCNGG	5 cut(s)	360, 701, 755, 833, 894
BmsI	GCATC	2 cut(s)	468, 674
BoxI	GACNNNNGTC	1 cut(s)	401
BpiI	GAAGAC	2 cut(s)	138, 999
Bpu10I	CCTNAGC	2 cut(s)	87, 744
Bpu1102I	GCTNAGC	1 cut(s)	1019
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	3 cut(s)	701, 755, 833
BsaHI	GRCGYC	2 cut(s)	261, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	5 cut(s)	564, 661, 832, 899, 922
Bse1I	ACTGG	2 cut(s)	220, 880
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	360, 894
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	5 cut(s)	564, 661, 832, 899, 922
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	78, 95, 758
BseNI	ACTGG	2 cut(s)	220, 880
BseRI	GAGGAG	2 cut(s)	31, 33
BseXI	GCAGC	6 cut(s)	17, 212, 304, 524, 539, 1027
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	5 cut(s)	56, 115, 256, 569, 722
BsiSI	CCGG	4 cut(s)	253, 701, 755, 833
BslFI	GGGAC	2 cut(s)	736, 977
BslI	CCNNNNNNNGG	5 cut(s)	564, 661, 832, 899, 922
BsmFI	GGGAC	2 cut(s)	736, 977
BsnI	GGCC	5 cut(s)	56, 115, 256, 569, 722
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	2 cut(s)	378, 902
Bsp1720I	GCTNAGC	1 cut(s)	1019
BspACI	CCGC	7 cut(s)	507, 509, 516, 525, 558, 561, 719
BspANI	GGCC	5 cut(s)	56, 115, 256, 569, 722
BspCNI	CTCAG	4 cut(s)	79, 96, 757, 1032
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	2 cut(s)	76, 144
BspLI	GGNNCC	2 cut(s)	398, 568
BspMAI	CTGCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	910
BspQI	GCTCTTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	220, 880
BssMI	GATC	2 cut(s)	378, 902
BssNI	GRCGYC	2 cut(s)	261, 435
BssT1I	CCWWGG	3 cut(s)	116, 482, 916
Bst2UI	CCWGG	2 cut(s)	360, 894
Bst4CI	ACNGT	4 cut(s)	8, 124, 237, 959
Bst6I	CTCTTC	3 cut(s)	19, 103, 282
BstACI	GRCGYC	2 cut(s)	261, 435
BstC8I	GCNNGC	3 cut(s)	193, 414, 446
BstDEI	CTNAG	4 cut(s)	87, 104, 744, 1019
BstDSI	CCRYGG	2 cut(s)	163, 507
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	2 cut(s)	381, 905
BstMBI	GATC	2 cut(s)	378, 902
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 418, 512, 515, 524, 560, 566
BstNI	CCWGG	2 cut(s)	360, 894
BstNSI	RCATGY	2 cut(s)	683, 1000
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	5 cut(s)	358, 699, 753, 831, 892
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	6 cut(s)	17, 212, 304, 524, 539, 1027
BstV2I	GAAGAC	2 cut(s)	138, 999
BsuRI	GGCC	5 cut(s)	56, 115, 256, 569, 722
BtgI	CCRYGG	2 cut(s)	163, 507
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	887, 950
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	193, 414, 446
CaiI	CAGNNNCTG	1 cut(s)	298
CciI	TCATGA	2 cut(s)	76, 144
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	7 cut(s)	91, 100, 113, 255, 396, 567, 847
Cfr42I	CCGCGG	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	6 cut(s)	77, 145, 463, 680, 922, 997
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	4 cut(s)	87, 104, 744, 1019
DpnI	GATC	2 cut(s)	380, 904
DpnII	GATC	2 cut(s)	378, 902
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	19, 103, 282
EarI	CTCTTC	3 cut(s)	19, 103, 282
Eco130I	CCWWGG	3 cut(s)	116, 482, 916
Eco24I	GRGCYC	1 cut(s)	745
Eco47I	GGWCC	4 cut(s)	91, 100, 396, 847
Eco57I	CTGAAG	1 cut(s)	609
EcoO109I	RGGNCCY	2 cut(s)	113, 396
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	358, 892
EcoT14I	CCWWGG	3 cut(s)	116, 482, 916
EcoT38I	GRGCYC	1 cut(s)	745
ErhI	CCWWGG	3 cut(s)	116, 482, 916
FaeI	CATG	6 cut(s)	80, 148, 466, 683, 925, 1000
FaiI	YATR	8 cut(s)	78, 146, 464, 681, 876, 923, 968, 998
FalI	AAGNNNNNCTT	6 cut(s)	100, 132, 120, 152, 279, 311
FaqI	GGGAC	2 cut(s)	736, 977
FatI	CATG	6 cut(s)	76, 144, 462, 679, 921, 996
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	1 cut(s)	745
FspBI	CTAG	3 cut(s)	14, 483, 711
GlaI	GCGC	1 cut(s)	553
GsaI	CCCAGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	5 cut(s)	56, 115, 256, 569, 722
HapII	CCGG	4 cut(s)	253, 701, 755, 833
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	2 cut(s)	261, 435
Hin1II	CATG	6 cut(s)	80, 148, 466, 683, 925, 1000
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	2 cut(s)	439, 817
HindII	GTYRAC	2 cut(s)	439, 817
HinfI	GANTC	2 cut(s)	301, 731
HpaI	GTTAAC	1 cut(s)	817
HpaII	CCGG	4 cut(s)	253, 701, 755, 833
HphI	GGTGA	5 cut(s)	271, 538, 569, 644, 851
Hpy166II	GTNNAC	3 cut(s)	439, 817, 955
Hpy188I	TCNGA	7 cut(s)	207, 266, 300, 730, 763, 907, 973
Hpy188III	TCNNGA	5 cut(s)	77, 145, 305, 475, 627
Hpy8I	GTNNAC	3 cut(s)	439, 817, 955
Hpy99I	CGWCG	2 cut(s)	263, 270
HpyAV	CCTTC	3 cut(s)	164, 357, 622
HpyCH4III	ACNGT	4 cut(s)	8, 124, 237, 959
HpyCH4IV	ACGT	2 cut(s)	261, 435
HpyCH4V	TGCA	4 cut(s)	33, 200, 228, 347
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 418, 512, 515, 524, 560, 566
HpyF3I	CTNAG	4 cut(s)	87, 104, 744, 1019
HpySE526I	ACGT	2 cut(s)	261, 435
Hsp92I	GRCGYC	2 cut(s)	261, 435
Hsp92II	CATG	6 cut(s)	80, 148, 466, 683, 925, 1000
HspAI	GCGC	1 cut(s)	552
KspAI	GTTAAC	1 cut(s)	817
KspI	CCGCGG	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	378, 902
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	6 cut(s)	17, 212, 304, 524, 539, 1027
LweI	GCATC	2 cut(s)	468, 674
MaeI	CTAG	3 cut(s)	14, 483, 711
MaeII	ACGT	2 cut(s)	261, 435
MaeIII	GTNAC	6 cut(s)	431, 639, 650, 669, 682, 692
MalI	GATC	2 cut(s)	380, 904
MboI	GATC	2 cut(s)	378, 902
MboII	GAAGA	8 cut(s)	36, 120, 140, 143, 299, 612, 615, 1004
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	7 cut(s)	148, 342, 498, 535, 838, 937, 976
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	3 cut(s)	158, 289, 786
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	4 cut(s)	253, 701, 755, 833
MspR9I	CCNGG	5 cut(s)	360, 701, 755, 833, 894
MvaI	CCWGG	2 cut(s)	360, 894
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	7 cut(s)	197, 418, 512, 515, 524, 560, 566
NciI	CCSGG	3 cut(s)	701, 755, 833
NdeII	GATC	2 cut(s)	378, 902
NlaIII	CATG	6 cut(s)	80, 148, 466, 683, 925, 1000
NlaIV	GGNNCC	2 cut(s)	398, 568
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	4 cut(s)	431, 650, 669, 682
NspI	RCATGY	2 cut(s)	683, 1000
PagI	TCATGA	2 cut(s)	76, 144
PciI	ACATGT	2 cut(s)	679, 996
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	922
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	396
PscI	ACATGT	2 cut(s)	679, 996
PshAI	GACNNNNGTC	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	358, 892
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	2 cut(s)	358, 892
PspN4I	GGNNCC	2 cut(s)	398, 568
PspPI	GGNCC	7 cut(s)	91, 100, 113, 255, 396, 567, 847
PspPPI	RGGWCCY	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	678
SacII	CCGCGG	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	816
Sau3AI	GATC	2 cut(s)	378, 902
Sau96I	GGNCC	7 cut(s)	91, 100, 113, 255, 396, 567, 847
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	5 cut(s)	360, 701, 755, 833, 894
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	468, 674
SfcI	CTRYAG	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	510
SgrBI	CCGCGG	1 cut(s)	510
SinI	GGWCC	4 cut(s)	91, 100, 396, 847
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	7 cut(s)	148, 342, 498, 535, 838, 937, 976
SsiI	CCGC	7 cut(s)	507, 509, 516, 525, 558, 561, 719
SspMI	CTAG	3 cut(s)	14, 483, 711
StyD4I	CCNGG	5 cut(s)	358, 699, 753, 831, 892
StyI	CCWWGG	3 cut(s)	116, 482, 916
TaaI	ACNGT	4 cut(s)	8, 124, 237, 959
TaiI	ACGT	2 cut(s)	264, 438
TaqI	TCGA	1 cut(s)	492
TasI	AATT	7 cut(s)	148, 342, 498, 535, 838, 937, 976
TauI	GCSGC	5 cut(s)	509, 512, 518, 563, 722
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TscAI	CASTG	2 cut(s)	887, 950
TseFI	GTSAC	4 cut(s)	431, 650, 669, 682
TseI	GCWGC	6 cut(s)	30, 225, 292, 512, 527, 1015
Tsp45I	GTSAC	4 cut(s)	431, 650, 669, 682
TspDTI	ATGAA	3 cut(s)	65, 161, 302
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	2 cut(s)	887, 950
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	4 cut(s)	91, 100, 396, 847
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	683, 1000
XmaJI	CCTAGG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	14, 483, 711
ZraI	GACGTC	2 cut(s)	262, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.