Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Reverse (-)

54268020 .. 54270389

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCTAACAAAATTGAGTTGCAATTTGTAAACCCAGGTCTGAAAAGAACTGGAAAGAGCTGCAGATTAAGGTGGCTCAACTATCTCCGACCCGACGTTCGACGTGGCAACATCACTCTCGAAGAGCAGCTTCTCATTCTTGAGCTTCATTCTCGCTGGGGCAACCGATGGTCCAAAATTGCACAGCACTTGCCCGGAAGGACTGACAATGAAATCAAAAACTACTGGAGGACTCGCGTGCAAAAACACGCAAAGCAGCTCAAGTGTGACGTCAACAGCAAGCAGTTCAAGGACACCATGCGCTACCTCTGGATGCCGAGATTGGTCGAGAGAATTCAAGCCGCCGCGTCCGCCGCCACCGCCCCCACCGGAGCCTCTTCTTCTATCACAACCGCCGCGGCCAACACTTATCATTTCAACAATAACAATACCAGCTTCCAAGCCCCCGCGGGAGCAGGACACGTCGCTTTACAACAGGCAACGCTCATTGGCAATAACAATGACTTGGCCGGAAGTTACACCACTCCGGAAAACTCCAGCACTGCGGCGTCGTCGGACTCGTTTGGGACTCAGGTCTCGCCGGTGTCGGAGCTAACCGACTATTACAGTAATATGTCGGTTAACAATAATAAACCTAGTAGTCAGGCTCTGGATTACTTCCAAGCCACCAATCCTCATCACCAAGTCGGTTATCATGATTCCATGACTAGTCCATCTGGTTACTCATTCAATCAAGGAGGACTAAACAGCCATAGCTTTCAAGCTGCTTCGGCGCCGGAGCAAAACAACAACGGCCAGTGGGGCATGGACGGTGGGGACTTTTCGGACAATCTGTGGAACGTTGAGGAATCCGACATGTGGTTCTTACAGCAGCAACTCGGCAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

296

Amino Acids

33.01

Weight (kDa)

7.82

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	35 - 78	9.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	39 - 82	3.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	772
AccII	CGCG	4 cut(s)	237, 347, 398, 449
AccIII	TCCGGA	1 cut(s)	526
AclI	AACGTT	1 cut(s)	840
AcoI	YGGCCR	3 cut(s)	399, 507, 793
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	3 cut(s)	270, 548, 773
AfiI	CCNNNNNNNGG	1 cut(s)	858
AflIII	ACRYGT	2 cut(s)	460, 855
AgsI	TTSAA	5 cut(s)	289, 338, 418, 730, 761
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	2 cut(s)	104, 463
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	60, 130, 145, 259, 435, 592, 756, 764
AluI	AGCT	8 cut(s)	60, 130, 145, 259, 435, 592, 756, 764
Alw26I	GTCTC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	649
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	3 cut(s)	399, 507, 793
ApeKI	GCWGC	5 cut(s)	60, 127, 256, 764, 871
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspLEI	GCGC	2 cut(s)	303, 775
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	772
BbvI	GCAGC	5 cut(s)	47, 139, 268, 751, 883
BccI	CCATC	2 cut(s)	162, 721
BceAI	ACGGC	1 cut(s)	808
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	580
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	2 cut(s)	636, 708
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	776
BglI	GCCNNNNNGGC	1 cut(s)	801
Bme1390I	CCNGG	2 cut(s)	36, 195
Bme18I	GGWCC	1 cut(s)	171
BmgBI	CACGTC	2 cut(s)	104, 463
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	373, 774
BmrFI	CCNGG	2 cut(s)	36, 195
BmsI	GCATC	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	572
BpmI	CTGGAG	2 cut(s)	247, 520
BpuEI	CTTGAG	2 cut(s)	161, 245
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	3 cut(s)	270, 548, 773
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	34, 396, 447
BsaWI	WCCGGW	2 cut(s)	368, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	858
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	3 cut(s)	55, 230, 796
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	34, 396, 447
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	858
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	3 cut(s)	55, 230, 796
BseXI	GCAGC	5 cut(s)	47, 139, 268, 751, 883
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	4 cut(s)	237, 347, 398, 449
BshFI	GGCC	3 cut(s)	401, 509, 795
BshNI	GGYRCC	1 cut(s)	772
BsiSI	CCGG	6 cut(s)	195, 369, 510, 527, 581, 776
BslFI	GGGAC	2 cut(s)	580, 830
BslI	CCNNNNNNNGG	1 cut(s)	858
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	2 cut(s)	580, 830
BsnI	GGCC	3 cut(s)	401, 509, 795
Bso31I	GGTCTC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	526
BspANI	GGCC	3 cut(s)	401, 509, 795
BspCNI	CTCAG	1 cut(s)	583
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	4 cut(s)	237, 347, 398, 449
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	373, 774
BspMAI	CTGCAG	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	580
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	3 cut(s)	55, 230, 796
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	34, 396, 447
BssNI	GRCGYC	3 cut(s)	270, 548, 773
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	608, 812
Bst6I	CTCTTC	2 cut(s)	117, 382
BstACI	GRCGYC	3 cut(s)	270, 548, 773
BstC8I	GCNNGC	2 cut(s)	239, 281
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	2 cut(s)	396, 447
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	4 cut(s)	237, 347, 398, 449
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	2 cut(s)	303, 775
BstMAI	GTCTC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 353, 359, 770, 801
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	859
BstPAI	GACNNNNGTC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	34, 193
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	4 cut(s)	237, 347, 398, 449
BstV1I	GCAGC	5 cut(s)	47, 139, 268, 751, 883
BsuRI	GGCC	3 cut(s)	401, 509, 795
BtgI	CCRYGG	2 cut(s)	396, 447
BtrI	CACGTC	2 cut(s)	104, 463
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	540, 803
Cac8I	GCNNGC	2 cut(s)	239, 281
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	2 cut(s)	303, 775
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	171
Cfr42I	CCGCGG	2 cut(s)	399, 450
CseI	GACGC	2 cut(s)	336, 537
CviAII	CATG	5 cut(s)	298, 695, 703, 805, 856
DdeI	CTNAG	1 cut(s)	570
DinI	GGCGCC	1 cut(s)	774
EaeI	YGGCCR	3 cut(s)	399, 507, 793
Eam1104I	CTCTTC	2 cut(s)	117, 382
EarI	CTCTTC	2 cut(s)	117, 382
EciI	GGCGGA	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	774
EheI	GGCGCC	1 cut(s)	774
FaeI	CATG	5 cut(s)	301, 698, 706, 808, 859
FaiI	YATR	7 cut(s)	299, 614, 696, 704, 753, 806, 857
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	2 cut(s)	580, 830
FatI	CATG	5 cut(s)	297, 694, 702, 804, 855
FauI	CCCGC	2 cut(s)	442, 454
FokI	GGATG	1 cut(s)	325
FspBI	CTAG	2 cut(s)	636, 708
GlaI	GCGC	2 cut(s)	302, 774
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	247, 520
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	3 cut(s)	401, 509, 795
HapII	CCGG	6 cut(s)	195, 369, 510, 527, 581, 776
HgaI	GACGC	2 cut(s)	336, 537
HhaI	GCGC	2 cut(s)	303, 775
Hin1I	GRCGYC	3 cut(s)	270, 548, 773
Hin1II	CATG	5 cut(s)	301, 698, 706, 808, 859
Hin6I	GCGC	2 cut(s)	301, 773
HinP1I	GCGC	2 cut(s)	301, 773
HincII	GTYRAC	2 cut(s)	274, 622
HindII	GTYRAC	2 cut(s)	274, 622
HinfI	GANTC	5 cut(s)	232, 557, 568, 698, 848
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	6 cut(s)	195, 369, 510, 527, 581, 776
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	3 cut(s)	31, 274, 622
Hpy188I	TCNGA	6 cut(s)	42, 89, 556, 589, 826, 853
Hpy188III	TCNNGA	7 cut(s)	119, 140, 310, 328, 527, 650, 695
Hpy8I	GTNNAC	3 cut(s)	31, 274, 622
Hpy99I	CGWCG	5 cut(s)	98, 105, 467, 553, 556
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	608, 812
HpyCH4IV	ACGT	5 cut(s)	96, 103, 270, 462, 840
HpyCH4V	TGCA	4 cut(s)	22, 63, 182, 241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 353, 359, 770, 801
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	5 cut(s)	96, 103, 270, 462, 840
Hsp92I	GRCGYC	3 cut(s)	270, 548, 773
Hsp92II	CATG	5 cut(s)	301, 698, 706, 808, 859
HspAI	GCGC	2 cut(s)	301, 773
KasI	GGCGCC	1 cut(s)	772
Kpn2I	TCCGGA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	622
KspI	CCGCGG	2 cut(s)	399, 450
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	4 cut(s)	371, 452, 589, 778
Lsp1109I	GCAGC	5 cut(s)	47, 139, 268, 751, 883
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	636, 708
MaeII	ACGT	5 cut(s)	96, 103, 270, 462, 840
MaeIII	GTNAC	3 cut(s)	266, 515, 719
MboII	GAAGA	3 cut(s)	134, 369, 372
MluCI	AATT	4 cut(s)	12, 23, 177, 333
Mly113I	GGCGCC	1 cut(s)	773
MlyI	GAGTC	3 cut(s)	226, 551, 562
MmeI	TCCRAC	4 cut(s)	112, 534, 567, 876
MnlI	CCTC	6 cut(s)	222, 317, 385, 684, 731, 838
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	2 cut(s)	68, 621
MspA1I	CMGCKG	2 cut(s)	398, 449
MspI	CCGG	6 cut(s)	195, 369, 510, 527, 581, 776
MspR9I	CCNGG	2 cut(s)	36, 195
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	4 cut(s)	237, 347, 398, 449
MwoI	GCNNNNNNNGC	5 cut(s)	350, 353, 359, 770, 801
NarI	GGCGCC	1 cut(s)	773
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	5 cut(s)	301, 698, 706, 808, 859
NlaIV	GGNNCC	2 cut(s)	373, 774
NmeAIII	GCCGAG	2 cut(s)	342, 858
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	859
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	1 cut(s)	855
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	698, 848
PleI	GAGTC	3 cut(s)	226, 551, 562
PluTI	GGCGCC	1 cut(s)	776
PpsI	GAGTC	3 cut(s)	226, 551, 562
PscI	ACATGT	1 cut(s)	855
PshAI	GACNNNNGTC	1 cut(s)	572
Psp1406I	AACGTT	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	373, 774
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	649
SacII	CCGCGG	2 cut(s)	399, 450
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	68, 621
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	3 cut(s)	226, 551, 562
ScrFI	CCNGG	2 cut(s)	36, 195
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	61
SfoI	GGCGCC	1 cut(s)	774
Sfr303I	CCGCGG	2 cut(s)	399, 450
SgrAI	CRCCGGYG	1 cut(s)	580
SgrBI	CCGCGG	2 cut(s)	399, 450
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	140, 260
SmoI	CTYRAG	2 cut(s)	140, 260
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	4 cut(s)	12, 23, 177, 333
SspDI	GGCGCC	1 cut(s)	772
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	2 cut(s)	636, 708
StyD4I	CCNGG	2 cut(s)	34, 193
TaaI	ACNGT	2 cut(s)	608, 812
TaiI	ACGT	5 cut(s)	99, 106, 273, 465, 843
TaqI	TCGA	3 cut(s)	100, 120, 327
TasI	AATT	4 cut(s)	12, 23, 177, 333
TauI	GCSGC	6 cut(s)	344, 347, 356, 398, 401, 548
TfiI	GAWTC	2 cut(s)	698, 848
Tru1I	TTAA	2 cut(s)	68, 621
Tru9I	TTAA	2 cut(s)	68, 621
TscAI	CASTG	2 cut(s)	547, 803
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	5 cut(s)	60, 127, 256, 764, 871
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	137, 225
TspRI	CASTG	2 cut(s)	547, 803
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	859
XspI	CTAG	2 cut(s)	636, 708
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.