Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Reverse (-)

20137214 .. 20139609

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTGACAAAGGAAGGAGCTTAAAGATCAACAAGAACATGGAGGAATTCACGAAAGTGGAAGAAGAAATGGACGTAAGGAGAGGTCCATGGACAGTTGAGGAAGATTTAGAGCTCATCAATTACATTGCTAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCCGAACTCAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTGAACTATCTCCGACCAGATGTGCGCCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACACACGTTGGGGCAATAGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACGGATAACGAGATCAAAAACTATTGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAATTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAAAGGATCCAAGCCGCGTCCATCGGGTCTGTTTCCATGTCATCTTGCGTCACCACCTCCTCAGATCAGTTCGTGATCAACAACAACAACACCAACAACGTGGATAATTTGGCTTTAATGAGTAACCCTAATGGTTACATCACGCCGGATAATTCCAGCGTGGCAGTATCTCCTGTATCAGATTTGACGGAGTGTCAAGTGAGTAGTGAAGTGTGGAAGATTGGTCAGGATGAGAATTTGGTGGATCCAAAAATGACATCGCCGAATTATATGGATAATAGCAGTGGACTATTAAACGGAGATTTTACGAAGATGCAAGATCAAAGTGACCTTAATTGGTTTGAAAATATTAATGGGATGGTACCAAATTATTCGGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACAAGTCCACGACAATGGAAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

307

Amino Acids

35.5

Weight (kDa)

5.38

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	28 - 75	1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	31 - 89	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	81 - 124	8.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	85 - 127	2.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	826
AccB1I	GGYRCC	1 cut(s)	826
AccII	CGCG	1 cut(s)	482
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	4 cut(s)	466, 479, 704, 717
AcsI	RAATTY	2 cut(s)	47, 700
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	828
AflIII	ACRYGT	3 cut(s)	290, 371, 373
AgsI	TTSAA	3 cut(s)	281, 380, 809
AhdI	GACNNNNNGTC	1 cut(s)	657
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	331
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	5 cut(s)	21, 115, 198, 397, 918
AluI	AGCT	5 cut(s)	21, 115, 198, 397, 918
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	466, 479, 704, 717
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	2 cut(s)	47, 700
AseI	ATTAAT	1 cut(s)	816
Asp718I	GGTACC	1 cut(s)	826
AspLEI	GCGC	2 cut(s)	173, 240
AspS9I	GGNCC	2 cut(s)	86, 186
AsuHPI	GGTGA	3 cut(s)	17, 152, 508
AvaII	GGWCC	2 cut(s)	86, 186
BamHI	GGATCC	2 cut(s)	471, 709
BanI	GGYRCC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	4 cut(s)	144, 300, 494, 817
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	540
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	2 cut(s)	199, 480
BlsI	GCNGC	2 cut(s)	200, 481
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	86, 186
BmeRI	GACNNNNNGTC	1 cut(s)	657
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	86, 186
BmiI	GGNNCC	3 cut(s)	473, 711, 828
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	441, 768
BpiI	GAAGAC	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	89, 241, 455
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	89, 241, 455
BseGI	GGATG	3 cut(s)	456, 700, 828
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	826
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	189, 611
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	473, 711, 828
BspMAI	CTGCAG	1 cut(s)	203
BspPI	GGATC	4 cut(s)	466, 479, 704, 717
BspT107I	GGYRCC	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	89, 241, 455
BssMI	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	97, 416, 845
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	312, 526
BstDSI	CCRYGG	2 cut(s)	89, 241
BstF5I	GGATG	3 cut(s)	456, 700, 828
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	173, 240
BstKTI	GATC	7 cut(s)	30, 354, 474, 532, 543, 712, 787
BstMBI	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	2 cut(s)	471, 709
BstXI	CCANNNNNNTGG	2 cut(s)	565, 911
BstYI	RGATCY	2 cut(s)	471, 709
BtgI	CCRYGG	2 cut(s)	89, 241
BtgZI	GCGATG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	456, 700, 828
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	1 cut(s)	754
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	2 cut(s)	173, 240
Cfr13I	GGNCC	2 cut(s)	86, 186
CseI	GACGC	2 cut(s)	471, 502
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	6 cut(s)	40, 90, 137, 386, 436, 502
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	2 cut(s)	312, 526
DpnI	GATC	7 cut(s)	29, 353, 473, 531, 542, 711, 786
DpnII	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
DraI	TTTAAA	1 cut(s)	427
DriI	GACNNNNNGTC	1 cut(s)	657
Eam1105I	GACNNNNNGTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	86, 186
Eco53kI	GAGCTC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	6 cut(s)	43, 93, 140, 389, 439, 505
FaiI	YATR	9 cut(s)	41, 91, 138, 251, 387, 437, 503, 735, 737
FatI	CATG	6 cut(s)	39, 89, 136, 385, 435, 501
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	199, 480
FokI	GGATG	3 cut(s)	463, 707, 835
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	199, 480
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	172, 239
GluI	GCNGC	2 cut(s)	199, 480
HapII	CCGG	2 cut(s)	189, 611
HgaI	GACGC	2 cut(s)	471, 502
HhaI	GCGC	2 cut(s)	173, 240
Hin1II	CATG	6 cut(s)	43, 93, 140, 389, 439, 505
Hin6I	GCGC	2 cut(s)	171, 238
HinP1I	GCGC	2 cut(s)	171, 238
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	189, 611
HphI	GGTGA	3 cut(s)	17, 152, 508
Hpy166II	GTNNAC	4 cut(s)	412, 419, 752, 904
Hpy188I	TCNGA	5 cut(s)	227, 529, 646, 841, 923
Hpy188III	TCNNGA	5 cut(s)	52, 271, 278, 538, 692
Hpy8I	GTNNAC	4 cut(s)	412, 419, 752, 904
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	9, 137
HpyCH4III	ACNGT	3 cut(s)	97, 416, 845
HpyCH4IV	ACGT	5 cut(s)	75, 292, 373, 408, 564
HpyCH4V	TGCA	4 cut(s)	201, 320, 389, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	312, 526
HpySE526I	ACGT	5 cut(s)	75, 292, 373, 408, 564
Hsp92II	CATG	6 cut(s)	43, 93, 140, 389, 439, 505
HspAI	GCGC	2 cut(s)	171, 238
KpnI	GGTACC	1 cut(s)	830
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	9 cut(s)	202, 243, 318, 345, 624, 634, 651, 677, 862
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	2 cut(s)	441, 768
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	5 cut(s)	75, 292, 373, 408, 564
MaeIII	GTNAC	5 cut(s)	5, 514, 587, 599, 791
MalI	GATC	7 cut(s)	29, 353, 473, 531, 542, 711, 786
MboI	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
MboII	GAAGA	8 cut(s)	74, 77, 116, 272, 348, 694, 787, 881
MflI	RGATCY	2 cut(s)	471, 709
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	9 cut(s)	47, 121, 422, 571, 616, 700, 730, 799, 832
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	7 cut(s)	37, 77, 94, 266, 465, 532, 535
MseI	TTAA	7 cut(s)	23, 399, 426, 581, 758, 798, 816
MslI	CAYNNNNRTG	2 cut(s)	56, 909
MspI	CCGG	2 cut(s)	189, 611
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
NlaIII	CATG	6 cut(s)	43, 93, 140, 389, 439, 505
NlaIV	GGNNCC	3 cut(s)	473, 711, 828
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	3 cut(s)	5, 514, 791
NspI	RCATGY	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	200, 481
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	331
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	473, 711, 828
PspPI	GGNCC	2 cut(s)	86, 186
PstI	CTGCAG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	471, 709
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	2 cut(s)	56, 909
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	7 cut(s)	23, 399, 426, 581, 758, 798, 816
SatI	GCNGC	2 cut(s)	199, 480
Sau3AI	GATC	7 cut(s)	27, 351, 471, 529, 540, 709, 784
Sau96I	GGNCC	2 cut(s)	86, 186
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	441, 768
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	86, 186
SmiMI	CAYNNNNRTG	2 cut(s)	56, 909
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	9 cut(s)	47, 121, 422, 571, 616, 700, 730, 799, 832
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	2 cut(s)	326, 814
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	3 cut(s)	97, 416, 845
TaiI	ACGT	5 cut(s)	78, 295, 376, 411, 567
TaqI	TCGA	2 cut(s)	148, 258
TasI	AATT	9 cut(s)	47, 121, 422, 571, 616, 700, 730, 799, 832
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	7 cut(s)	23, 399, 426, 581, 758, 798, 816
Tru9I	TTAA	7 cut(s)	23, 399, 426, 581, 758, 798, 816
TscAI	CASTG	1 cut(s)	754
TseFI	GTSAC	3 cut(s)	5, 514, 791
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	3 cut(s)	5, 514, 791
TspDTI	ATGAA	2 cut(s)	452, 882
TspGWI	ACGGA	3 cut(s)	356, 668, 777
TspRI	CASTG	1 cut(s)	754
VpaK11BI	GGWCC	2 cut(s)	86, 186
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	2 cut(s)	47, 700
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.