Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Reverse (-)

17895784 .. 17898813

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAGAGGACGAAGCTTGACACTCTCAAGAGTAAAGCTCGAGCTTGCGAGAAGAAGCATGTCTGCAACATCCGTACCTTCAATGGCGGATTTTCTCACCAAAAAACCTTACTCTCCTCCTTCTTGGGCTTCTCATCTTCGTCCGCTTCCTTCTCACACTTTCTCCCTCGCTCACCTTCCTACTCCGATCCATCGATGGAATCTTCCTGGTCTTCCTAATGGCACAGAACTCTGGATCAAGCGAGATGATTTCACCGGAATGGAATTGAGTGGAAACAAAGTACGAAAACTCGAATTCTTAATGGCGGAAGCTGTTGATCAACACGCTGATACTGTAATCACTATCGGCGGTATTCAGAGCAATCATTGTCGTGCTACAGCCACTGCATCTAACTATCTTAATCTCAATTCTCATCTTATTCTCCGTACTTCCAAGCTTCTTGCTGATGAAGATCCTGGATTGGTTGGGAATCTCCTTGTCGAGCGTCTCGTTGGAGCTAATGTTCATCTAATCTCTAAAGAAGAGTATTCTTCCATTGGGAGTGAGGCTCTTACTAATGCTCTGAAAGAGAAACTGGAAAAAGAAGGAAAGAAACCCTATGTTATTCCAGTCGGTGGATCGAACTCTTTGGGAACTTGGGGTTATATAGAAGCAGCAAGGGAAATTGAGGAGCAGCTGAATTATAGACCCGATGACCTGAAATTTGATGATATTGTGGTAGCATGTGGCAGTGGTGGTACAATTGCTGGTATTTCATTGGGGTCTTGGTTGGGAGCTCTAAAAGCCAAGGTTCATGCTTTCTCGGTTTGCGATGATCCTGATTACTTCTATGACTTTGTCCAAGGGCTTCTGGATGGACTTCACGCTGGTGTTAACTCTCGTGATATCGTCAACATCCACAATGCCAAAGGAAAAGGATATGCCATGAACACGTCAGAGGAGCTTGAGTTTGTAAAGAAAGTAGCAAGTTCAACTGGTGTTATTCTTGATCCGGTTTACAGTGGGAAAGCTGCGTATGGTTTGATAAATGAGATCACCAAAGATCCCAAATGTTGGGAGGGAAGGAAGATATTGTTCATACACACTGGTGGGCTTCTTGGGTTGTATGATAAGGTTGATCAAATGGCATCTCTGATGGGTAATTGGTCCCGGATGGATGTTTCAGAATCCGTTCCAAGAAAAGATGGTGTTGGGAAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

401

Amino Acids

43.9

Weight (kDa)

6.87

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	56 - 363	3e-38	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	614, 1053
AciI	CCGC	4 cut(s)	86, 143, 305, 348
AclWI	GGATC	7 cut(s)	181, 242, 446, 625, 809, 983, 1037
AcsI	RAATTY	2 cut(s)	293, 701
AfaI	GTAC	4 cut(s)	75, 282, 427, 739
AfiI	CCNNNNNNNGG	2 cut(s)	614, 1053
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	2 cut(s)	81, 972
AjiI	CACGTC	1 cut(s)	933
AjnI	CCWGG	2 cut(s)	205, 454
AleI	CACNNNNGTG	2 cut(s)	867, 1086
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	7 cut(s)	181, 242, 446, 625, 809, 983, 1037
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	653, 673, 1010
ApoI	RAATTY	2 cut(s)	293, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
Asp700I	GAANNNNTTC	2 cut(s)	1170, 1199
AspS9I	GGNCC	1 cut(s)	1146
AsuC2I	CCSGG	1 cut(s)	1150
AsuHPI	GGTGA	4 cut(s)	88, 164, 244, 1027
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	1146
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BanII	GRGCYC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	778
BbvI	GCAGC	3 cut(s)	665, 685, 997
BccI	CCATC	6 cut(s)	189, 198, 848, 1129, 1147, 1178
BciT130I	CCWGG	2 cut(s)	207, 456
BclI	TGATCA	2 cut(s)	316, 1117
BcnI	CCSGG	1 cut(s)	1150
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	1204
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	3 cut(s)	654, 674, 1011
BlsI	GCNGC	3 cut(s)	655, 675, 1012
Bme1390I	CCNGG	3 cut(s)	207, 456, 1150
Bme18I	GGWCC	1 cut(s)	1146
BmeT110I	CYCGRG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	933
BmgT120I	GGNCC	1 cut(s)	1146
BmiI	GGNNCC	1 cut(s)	1148
BmrFI	CCNGG	3 cut(s)	207, 456, 1150
BmsI	GCATC	2 cut(s)	395, 1136
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	4 cut(s)	21, 53, 532, 564
BpuEI	CTTGAG	2 cut(s)	10, 965
BpuMI	CCSGG	1 cut(s)	1150
Bsa29I	ATCGAT	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	786, 841
BsaWI	WCCGGW	2 cut(s)	254, 991
BsaXI	ACNNNNNCTCC	6 cut(s)	146, 176, 486, 516, 932, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 1053
Bse1I	ACTGG	4 cut(s)	579, 608, 979, 1090
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	207, 456
BseCI	ATCGAT	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	786, 841
BseGI	GGATG	5 cut(s)	68, 859, 894, 1158, 1162
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	614, 1053
BseNI	ACTGG	4 cut(s)	579, 608, 979, 1090
BseRI	GAGGAG	3 cut(s)	105, 683, 953
BseXI	GCAGC	3 cut(s)	665, 685, 997
BshVI	ATCGAT	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	778
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	255, 992, 1150
BslFI	GGGAC	1 cut(s)	1132
BslI	CCNNNNNNNGG	2 cut(s)	614, 1053
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	1132
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	778
BspACI	CCGC	4 cut(s)	86, 143, 305, 348
BspDI	ATCGAT	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	1148
BspPI	GGATC	7 cut(s)	181, 242, 446, 625, 809, 983, 1037
BsrI	ACTGG	4 cut(s)	579, 608, 979, 1090
BssECI	CCNNGG	2 cut(s)	786, 841
BssSI	CACGAG	1 cut(s)	879
BssT1I	CCWWGG	2 cut(s)	786, 841
Bst2BI	CACGAG	1 cut(s)	879
Bst2UI	CCWGG	2 cut(s)	207, 456
Bst4CI	ACNGT	2 cut(s)	334, 1001
Bst6I	CTCTTC	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	5 cut(s)	68, 859, 894, 1158, 1162
BstMAI	GTCTC	1 cut(s)	491
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	2 cut(s)	207, 456
BstNSI	RCATGY	2 cut(s)	61, 726
BstSCI	CCNGG	3 cut(s)	205, 454, 1148
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	665, 685, 997
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	451, 1042
BstYI	RGATCY	2 cut(s)	451, 1042
Bsu15I	ATCGAT	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	933
BtsCI	GGATG	5 cut(s)	68, 859, 894, 1158, 1162
BtsI	GCAGTG	2 cut(s)	381, 736
BtsIMutI	CAGTG	4 cut(s)	381, 736, 1006, 1083
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	1146
ClaI	ATCGAT	1 cut(s)	193
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	4 cut(s)	74, 281, 426, 738
CviAII	CATG	4 cut(s)	58, 723, 794, 925
CviQI	GTAC	4 cut(s)	74, 281, 426, 738
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	2 cut(s)	101, 320
Ecl136II	GAGCTC	1 cut(s)	776
Eco130I	CCWWGG	2 cut(s)	786, 841
Eco24I	GRGCYC	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	1146
Eco53kI	GAGCTC	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	776
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	205, 454
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	786, 841
EcoT38I	GRGCYC	1 cut(s)	778
ErhI	CCWWGG	2 cut(s)	786, 841
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	4 cut(s)	61, 726, 797, 928
FaqI	GGGAC	1 cut(s)	1132
FatI	CATG	4 cut(s)	57, 722, 793, 924
FbaI	TGATCA	2 cut(s)	316, 1117
Fnu4HI	GCNGC	3 cut(s)	654, 674, 1011
FokI	GGATG	5 cut(s)	55, 866, 881, 1165, 1169
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	3 cut(s)	654, 674, 1011
FspBI	CTAG	1 cut(s)	1204
GluI	GCNGC	3 cut(s)	654, 674, 1011
HapII	CCGG	3 cut(s)	255, 992, 1150
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	4 cut(s)	61, 726, 797, 928
HincII	GTYRAC	2 cut(s)	874, 892
HindII	GTYRAC	2 cut(s)	874, 892
HindIII	AAGCTT	2 cut(s)	13, 434
HinfI	GANTC	3 cut(s)	199, 469, 1166
HpaI	GTTAAC	1 cut(s)	874
HpaII	CCGG	3 cut(s)	255, 992, 1150
HphI	GGTGA	4 cut(s)	88, 164, 244, 1027
Hpy166II	GTNNAC	3 cut(s)	874, 892, 997
Hpy188I	TCNGA	6 cut(s)	186, 357, 564, 937, 1134, 1165
Hpy188III	TCNNGA	6 cut(s)	27, 232, 818, 851, 881, 986
Hpy8I	GTNNAC	3 cut(s)	874, 892, 997
HpyAV	CCTTC	6 cut(s)	87, 129, 159, 185, 578, 1056
HpyCH4III	ACNGT	2 cut(s)	334, 1001
HpyCH4IV	ACGT	1 cut(s)	932
HpyCH4V	TGCA	2 cut(s)	65, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpySE526I	ACGT	1 cut(s)	932
Hsp92II	CATG	4 cut(s)	61, 726, 797, 928
Ksp22I	TGATCA	2 cut(s)	316, 1117
KspAI	GTTAAC	1 cut(s)	874
LmnI	GCTCC	4 cut(s)	494, 670, 773, 940
Lsp1109I	GCAGC	3 cut(s)	665, 685, 997
LweI	GCATC	2 cut(s)	395, 1136
MaeI	CTAG	1 cut(s)	1204
MaeII	ACGT	1 cut(s)	932
MboII	GAAGA	8 cut(s)	63, 128, 194, 203, 461, 522, 533, 1078
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	2 cut(s)	451, 1042
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	8 cut(s)	263, 293, 406, 663, 679, 701, 741, 1141
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	126, 176, 538, 661, 931, 1051
MroXI	GAANNNNTTC	2 cut(s)	1170, 1199
MseI	TTAA	3 cut(s)	299, 399, 873
MslI	CAYNNNNRTG	4 cut(s)	257, 369, 867, 1086
MspA1I	CMGCKG	1 cut(s)	676
MspI	CCGG	3 cut(s)	255, 992, 1150
MspR9I	CCNGG	3 cut(s)	207, 456, 1150
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	207, 456
MwoI	GCNNNNNNNGC	1 cut(s)	782
NciI	CCSGG	1 cut(s)	1150
NlaIII	CATG	4 cut(s)	61, 726, 797, 928
NlaIV	GGNNCC	1 cut(s)	1148
NspI	RCATGY	2 cut(s)	61, 726
OliI	CACNNNNGTG	2 cut(s)	867, 1086
PaeR7I	CTCGAG	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PdmI	GAANNNNTTC	2 cut(s)	1170, 1199
PfeI	GAWTC	3 cut(s)	199, 469, 1166
PflFI	GACNNNGTC	1 cut(s)	836
PflMI	CCANNNNNTGG	2 cut(s)	614, 1053
PfoI	TCCNGGA	2 cut(s)	454, 1148
PkrI	GCNGC	3 cut(s)	655, 675, 1012
Psp124BI	GAGCTC	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	205, 454
PspGI	CCWGG	2 cut(s)	205, 454
PspN4I	GGNNCC	1 cut(s)	1148
PspPI	GGNCC	1 cut(s)	1146
PspXI	VCTCGAGB	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	451, 1042
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	4 cut(s)	75, 282, 427, 739
RsaNI	GTAC	4 cut(s)	74, 281, 426, 738
RseI	CAYNNNNRTG	4 cut(s)	257, 369, 867, 1086
SacI	GAGCTC	1 cut(s)	778
SaqAI	TTAA	3 cut(s)	299, 399, 873
SatI	GCNGC	3 cut(s)	654, 674, 1011
Sau96I	GGNCC	1 cut(s)	1146
ScrFI	CCNGG	3 cut(s)	207, 456, 1150
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	2 cut(s)	395, 1136
SfcI	CTRYAG	1 cut(s)	375
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	1146
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	4 cut(s)	257, 369, 867, 1086
SmlI	CTYRAG	3 cut(s)	25, 38, 944
SmoI	CTYRAG	3 cut(s)	25, 38, 944
Sse9I	AATT	8 cut(s)	263, 293, 406, 663, 679, 701, 741, 1141
SsiI	CCGC	4 cut(s)	86, 143, 305, 348
SspMI	CTAG	1 cut(s)	1204
SstI	GAGCTC	1 cut(s)	778
StyD4I	CCNGG	3 cut(s)	205, 454, 1148
StyI	CCWWGG	2 cut(s)	786, 841
TaaI	ACNGT	2 cut(s)	334, 1001
TaiI	ACGT	1 cut(s)	935
TaqI	TCGA	5 cut(s)	39, 193, 291, 480, 620
TasI	AATT	8 cut(s)	263, 293, 406, 663, 679, 701, 741, 1141
TfiI	GAWTC	3 cut(s)	199, 469, 1166
Tru1I	TTAA	3 cut(s)	299, 399, 873
Tru9I	TTAA	3 cut(s)	299, 399, 873
TscAI	CASTG	4 cut(s)	388, 736, 1006, 1090
TseI	GCWGC	3 cut(s)	653, 673, 1010
TspDTI	ATGAA	6 cut(s)	462, 494, 744, 782, 941, 1066
TspGWI	ACGGA	3 cut(s)	61, 413, 1159
TspRI	CASTG	4 cut(s)	388, 736, 1006, 1090
Tth111I	GACNNNGTC	1 cut(s)	836
Van91I	CCANNNNNTGG	2 cut(s)	614, 1053
VpaK11BI	GGWCC	1 cut(s)	1146
XapI	RAATTY	2 cut(s)	293, 701
XceI	RCATGY	2 cut(s)	61, 726
XhoI	CTCGAG	1 cut(s)	38
XmnI	GAANNNNTTC	2 cut(s)	1170, 1199
XspI	CTAG	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.