RchiOBHm_Chr7g0177581

1-aminocyclopropane-1-carboxylate deaminase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
487360 .. 490857
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15819

Sequence Viewer

Length: 1302 bp
ATGTTGTGTTGCAGCGCCGGCTTCCGAATTCCTCCTCAGCTTACCAAAAACAAAGCCCTCCTCATTTTCCCTTCTCGCCCTGCTGCACTCACTCTCACCCAACCCAATAACAAACACAAACACAAAGCCTTTCAGATTCACTCACTAATGGAAGTGAACACTTCACACTCAAACTCAGGGCTGGACTTCCTCTCAAAGAAGCCATACTCACCTCCTTCTTGGGCATCCCACATAAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGCGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATAACCATAGGGGGCATCCAAAGTAACCACTGTCGTGCAACTGCTGTGGCTGCAAAGTATCTCAATCTCGACTCTTATCTCATTTTACGTACCTCTAAGGTTCTTGTGGATCAAGATCCCGGACTTACCGGAAACCTTTTGGTTGAGCGTTTAGTTGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGGCTCTTACTAATACCTTAAAGGAAAGATTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCAATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAAGTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGGGGTACAATTGCTGGTTTGTCATTGGGGTCTCGGCTGAGTTCATTGAAGGCAAAAGTTCATGCATTCTCTGTCTGCGATGACCCTGATTACTTCTACGACTTTGTTCAAGGCCTACTTGATGGACTTAAAGCAGGCGTTGATTCACGTAATATTGTTAACATTCAAAATGCCAAGGGTTTAGGGTATGCAATTAACACTGCTGAGGAGCTTACTTTTGTGAAGGAGATTGCCGCTACCACTGGGGTTATCTTGGATCCAGTTTACAGTGGCAAAGCTGCTTATGGATTGCTGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGAGGGCTGCTCGGGTTGTTTGACAAGGTTGAGCAGATTGCTCCATCATTGGGAAAATACAGCCGGATGGATGTCTGCGAATCTGTTCCACGGAAGGATTGTATCGGGAAAATGTTCTAG

Protein Analysis

433

Amino Acids

47.23

Weight (kDa)

9.06

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 87 - 395 2.8e-35 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 378
AciI CCGC 2 cut(s) 366, 1062
AclWI GGATC 6 cut(s) 542, 549, 721, 1079, 1092, 1159
AcsI RAATTY 2 cut(s) 27, 389
AfaI GTAC 2 cut(s) 523, 835
AfiI CCNNNNNNNGG 4 cut(s) 327, 385, 710, 1232
AgsI TTSAA 7 cut(s) 334, 602, 612, 746, 877, 938, 995
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 6 cut(s) 40, 361, 593, 772, 1039, 1106
AluI AGCT 6 cut(s) 40, 361, 593, 772, 1039, 1106
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 6 cut(s) 542, 549, 721, 1079, 1092, 1159
Ama87I CYCGRG 2 cut(s) 349, 1193
Aor13HI TCCGGA 1 cut(s) 378
AoxI GGCC 2 cut(s) 689, 940
ApeKI GCWGC 8 cut(s) 12, 83, 358, 482, 766, 769, 1106, 1189
ApoI RAATTY 2 cut(s) 27, 389
Asp700I GAANNNNTTC 2 cut(s) 1266, 1295
AspLEI GCGC 2 cut(s) 17, 339
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 3 cut(s) 88, 201, 260
AvaI CYCGRG 2 cut(s) 349, 1193
BamHI GGATCC 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 817, 849
Bbv12I GWGCWC 1 cut(s) 595
BbvCI CCTCAGC 2 cut(s) 36, 1032
BbvI GCAGC 8 cut(s) 24, 70, 370, 469, 778, 781, 1093, 1176
BccI CCATC 5 cut(s) 248, 391, 944, 1234, 1243
BceAI ACGGC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 864
BfaI CTAG 1 cut(s) 1300
BfoI RGCGCY 1 cut(s) 18
BlpI GCTNAGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 552
BmeT110I CYCGRG 2 cut(s) 349, 1193
BmiI GGNNCC 1 cut(s) 1086
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 4 cut(s) 233, 345, 394, 456
BmuI ACTGGG 1 cut(s) 1080
BplI GAGNNNNNCTC 4 cut(s) 628, 660, 1176, 1208
Bpu10I CCTNAGC 2 cut(s) 36, 1032
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 552
BsaAI YACGTR 2 cut(s) 521, 977
BsaBI GATNNNNATC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 4 cut(s) 321, 724, 1002, 1271
BsaWI WCCGGW 2 cut(s) 378, 560
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 385, 710, 1232
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 1075, 1088
Bse8I GATNNNNATC 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 321, 724, 1002, 1271
BseGI GGATG 6 cut(s) 224, 240, 360, 447, 1254, 1258
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 4 cut(s) 327, 385, 710, 1232
BseMII CTCAG 6 cut(s) 50, 189, 376, 857, 1023, 1125
BseNI ACTGG 2 cut(s) 1075, 1088
BseRI GAGGAG 3 cut(s) 24, 50, 1049
BseXI GCAGC 8 cut(s) 24, 70, 370, 469, 778, 781, 1093, 1176
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 691, 942
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 2 cut(s) 349, 1193
BsiSI CCGG 5 cut(s) 18, 379, 552, 561, 1246
BslI CCNNNNNNNGG 4 cut(s) 327, 385, 710, 1232
BsmAI GTCTC 1 cut(s) 864
BsmI GAATGC 1 cut(s) 893
BsnI GGCC 2 cut(s) 691, 942
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 2 cut(s) 349, 1193
Bsp1286I GDGCHC 1 cut(s) 595
Bsp13I TCCGGA 1 cut(s) 378
Bsp143I GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 2 cut(s) 366, 1062
BspANI GGCC 2 cut(s) 691, 942
BspCNI CTCAG 6 cut(s) 49, 188, 375, 858, 1024, 1126
BspEI TCCGGA 1 cut(s) 378
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 1086
BspPI GGATC 6 cut(s) 542, 549, 721, 1079, 1092, 1159
BspTNI GGTCTC 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 2 cut(s) 1075, 1088
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 4 cut(s) 321, 724, 1002, 1271
BssMI GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
BssT1I CCWWGG 1 cut(s) 1002
Bst4CI ACNGT 3 cut(s) 464, 779, 1097
Bst6I CTCTTC 2 cut(s) 612, 1175
BstBAI YACGTR 2 cut(s) 521, 977
BstC8I GCNNGC 3 cut(s) 19, 787, 964
BstDEI CTNAG 7 cut(s) 36, 175, 362, 528, 866, 1032, 1134
BstDSI CCRYGG 1 cut(s) 1271
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 6 cut(s) 224, 240, 360, 447, 1254, 1258
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 339
BstKTI GATC 6 cut(s) 346, 544, 550, 716, 1087, 1167
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
BstMWI GCNNNNNNNGC 2 cut(s) 18, 482
BstNSI RCATGY 1 cut(s) 822
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 550
BstSNI TACGTA 1 cut(s) 521
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 8 cut(s) 24, 70, 370, 469, 778, 781, 1093, 1176
BstX2I RGATCY 3 cut(s) 547, 1084, 1164
BstXI CCANNNNNNTGG 1 cut(s) 1149
BstYI RGATCY 3 cut(s) 547, 1084, 1164
BsuRI GGCC 2 cut(s) 691, 942
BtgI CCRYGG 1 cut(s) 1271
BtgZI GCGATG 2 cut(s) 354, 921
BtsCI GGATG 6 cut(s) 224, 240, 360, 447, 1254, 1258
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 5 cut(s) 460, 784, 1026, 1068, 1102
Cac8I GCNNGC 3 cut(s) 19, 787, 964
CfoI GCGC 2 cut(s) 17, 339
Cfr10I RCCGGY 1 cut(s) 17
Csp6I GTAC 2 cut(s) 522, 834
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 3 cut(s) 819, 890, 1129
CviQI GTAC 2 cut(s) 522, 834
DdeI CTNAG 7 cut(s) 36, 175, 362, 528, 866, 1032, 1134
DpnI GATC 6 cut(s) 345, 543, 549, 715, 1086, 1166
DpnII GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
Eam1104I CTCTTC 2 cut(s) 612, 1175
EarI CTCTTC 2 cut(s) 612, 1175
Ecl136II GAGCTC 1 cut(s) 593
Eco105I TACGTA 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 1002
Eco147I AGGCCT 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 864
Eco53kI GAGCTC 1 cut(s) 593
Eco88I CYCGRG 2 cut(s) 349, 1193
Eco91I GGTNACC 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 266
EcoRI GAATTC 2 cut(s) 27, 389
EcoT14I CCWWGG 1 cut(s) 1002
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 3 cut(s) 822, 893, 1132
FalI AAGNNNNNCTT 4 cut(s) 930, 962, 1154, 1186
FatI CATG 3 cut(s) 818, 889, 1128
FauNDI CATATG 1 cut(s) 694
FokI GGATG 6 cut(s) 211, 227, 367, 434, 1261, 1265
FriOI GRGCYC 1 cut(s) 595
FspBI CTAG 1 cut(s) 1300
GlaI GCGC 2 cut(s) 16, 338
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 691, 942
HapII CCGG 5 cut(s) 18, 379, 552, 561, 1246
HhaI GCGC 2 cut(s) 17, 339
Hin1II CATG 3 cut(s) 822, 893, 1132
Hin6I GCGC 2 cut(s) 15, 337
HinP1I GCGC 2 cut(s) 15, 337
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HinfI GANTC 7 cut(s) 136, 295, 503, 719, 971, 1138, 1262
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 5 cut(s) 18, 379, 552, 561, 1246
HphI GGTGA 3 cut(s) 88, 201, 260
Hpy166II GTNNAC 3 cut(s) 157, 988, 1093
Hpy188I TCNGA 4 cut(s) 26, 135, 718, 728
Hpy188III TCNNGA 6 cut(s) 379, 394, 500, 545, 755, 1288
Hpy8I GTNNAC 3 cut(s) 157, 988, 1093
HpyCH4III ACNGT 3 cut(s) 464, 779, 1097
HpyCH4IV ACGT 2 cut(s) 520, 976
HpyCH4V TGCA 8 cut(s) 12, 86, 358, 470, 485, 626, 893, 1019
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 482
HpyF3I CTNAG 7 cut(s) 36, 175, 362, 528, 866, 1032, 1134
HpySE526I ACGT 2 cut(s) 520, 976
Hsp92II CATG 3 cut(s) 822, 893, 1132
HspAI GCGC 2 cut(s) 15, 337
Kpn2I TCCGGA 1 cut(s) 378
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 988
Kzo9I GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
LmnI GCTCC 3 cut(s) 590, 1036, 1228
Lsp1109I GCAGC 8 cut(s) 24, 70, 370, 469, 778, 781, 1093, 1176
LweI GCATC 4 cut(s) 233, 345, 394, 456
MaeI CTAG 1 cut(s) 1300
MaeII ACGT 2 cut(s) 520, 976
MaeIII GTNAC 2 cut(s) 266, 455
MalI GATC 6 cut(s) 345, 543, 549, 715, 1086, 1166
MboI GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
MboII GAAGA 5 cut(s) 290, 629, 696, 1162, 1170
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 3 cut(s) 547, 1084, 1164
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 9 cut(s) 27, 304, 383, 389, 602, 630, 750, 837, 1020
MlyI GAGTC 2 cut(s) 497, 713
MmeI TCCRAC 1 cut(s) 568
Mph1103I ATGCAT 1 cut(s) 895
MroI TCCGGA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 1266, 1295
MseI TTAA 4 cut(s) 659, 957, 987, 1023
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 5 cut(s) 18, 379, 552, 561, 1246
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 1 cut(s) 893
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 18, 482
NaeI GCCGGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 694
NdeII GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 822, 893, 1132
NlaIV GGNNCC 1 cut(s) 1086
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 822
OliI CACNNNNGTG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 942
PctI GAATGC 1 cut(s) 893
PdiI GCCGGC 1 cut(s) 19
PdmI GAANNNNTTC 2 cut(s) 1266, 1295
PfeI GAWTC 5 cut(s) 136, 295, 971, 1138, 1262
PfoI TCCNGGA 1 cut(s) 550
PleI GAGTC 2 cut(s) 497, 713
PpsI GAGTC 2 cut(s) 497, 713
Ppu21I YACGTR 2 cut(s) 521, 977
Psp124BI GAGCTC 1 cut(s) 595
PspEI GGTNACC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 1086
PsuI RGATCY 3 cut(s) 547, 1084, 1164
RsaI GTAC 2 cut(s) 523, 835
RsaNI GTAC 2 cut(s) 522, 834
RseI CAYNNNNRTG 1 cut(s) 465
SacI GAGCTC 1 cut(s) 595
SaqAI TTAA 4 cut(s) 659, 957, 987, 1023
Sau3AI GATC 6 cut(s) 343, 541, 547, 713, 1084, 1164
SchI GAGTC 2 cut(s) 497, 713
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 4 cut(s) 233, 345, 394, 456
SmiMI CAYNNNNRTG 1 cut(s) 465
SnaBI TACGTA 1 cut(s) 521
Sse9I AATT 9 cut(s) 27, 304, 383, 389, 602, 630, 750, 837, 1020
SseBI AGGCCT 1 cut(s) 942
SsiI CCGC 2 cut(s) 366, 1062
SspI AATATT 1 cut(s) 982
SspMI CTAG 1 cut(s) 1300
SstI GAGCTC 1 cut(s) 595
StuI AGGCCT 1 cut(s) 942
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 3 cut(s) 464, 779, 1097
TaiI ACGT 2 cut(s) 523, 979
TaqI TCGA 2 cut(s) 501, 754
TaqII GACCGA 1 cut(s) 254
TasI AATT 9 cut(s) 27, 304, 383, 389, 602, 630, 750, 837, 1020
TauI GCSGC 2 cut(s) 369, 1064
TfiI GAWTC 5 cut(s) 136, 295, 971, 1138, 1262
Tru1I TTAA 4 cut(s) 659, 957, 987, 1023
Tru9I TTAA 4 cut(s) 659, 957, 987, 1023
TscAI CASTG 5 cut(s) 467, 784, 1033, 1075, 1102
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 8 cut(s) 12, 83, 358, 482, 766, 769, 1106, 1189
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 861, 878, 1162
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 5 cut(s) 467, 784, 1033, 1075, 1102
XapI RAATTY 2 cut(s) 27, 389
XceI RCATGY 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 2 cut(s) 1266, 1295
XspI CTAG 1 cut(s) 1300
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.